Wall clock time and date at job start Wed Apr 1 2020 05:22:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31521 * 1
3 3 Si 1.86806 * 119.99960 * 2 1
4 4 H 1.48494 * 109.46847 * 270.00379 * 3 2 1
5 5 H 1.48504 * 109.46932 * 29.99935 * 3 2 1
6 6 H 1.48490 * 109.46954 * 149.99884 * 3 2 1
7 7 C 1.37875 * 120.00174 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99507 * 0.02562 * 7 2 1
9 9 C 1.50701 * 120.00032 * 179.97438 * 7 2 1
10 10 N 1.46505 * 109.46708 * 179.97438 * 9 7 2
11 11 C 1.34781 * 119.99511 * 180.02562 * 10 9 7
12 12 O 1.21584 * 119.99970 * 359.97438 * 11 10 9
13 13 N 1.34771 * 119.99489 * 180.02562 * 11 10 9
14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10
15 15 C 1.50703 * 109.47064 * 179.97438 * 14 13 11
16 16 C 1.38255 * 119.99312 * 104.99827 * 15 14 13
17 17 C 1.38203 * 120.07833 * 179.97438 * 16 15 14
18 18 C 1.38330 * 120.06171 * 0.02562 * 17 16 15
19 19 Br 1.89104 * 120.01018 * 180.02562 * 18 17 16
20 20 C 1.38456 * 119.98477 * 0.02562 * 18 17 16
21 21 F 1.35097 * 120.03986 * 179.97438 * 20 18 17
22 22 C 1.38389 * 119.99070 * 284.72684 * 15 14 13
23 23 F 1.35103 * 120.02694 * 359.97406 * 22 15 14
24 24 H 0.97005 * 119.99561 * 0.02562 * 1 2 3
25 25 H 1.08994 * 109.46995 * 60.00309 * 9 7 2
26 26 H 1.08994 * 109.46942 * 300.00079 * 9 7 2
27 27 H 0.97003 * 120.00113 * 0.02562 * 10 9 7
28 28 H 0.96996 * 120.00772 * 359.97438 * 13 11 10
29 29 H 1.09002 * 109.47068 * 299.99729 * 14 13 11
30 30 H 1.09001 * 109.47372 * 59.99816 * 14 13 11
31 31 H 1.07998 * 119.96002 * 359.97438 * 16 15 14
32 32 H 1.08000 * 119.96875 * 180.02562 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1940 0.0005
8 1 1.4646 -2.1293 0.0005
9 6 3.5116 -1.1940 0.0000
10 7 3.9999 -2.5753 0.0013
11 6 5.3250 -2.8215 0.0016
12 8 6.1151 -1.8973 0.0003
13 7 5.7742 -4.0921 0.0023
14 6 7.2146 -4.3598 0.0032
15 6 7.4489 -5.8485 0.0045
16 6 7.8629 -6.4840 -1.1514
17 6 8.0788 -7.8491 -1.1520
18 6 7.8805 -8.5826 0.0039
19 35 8.1770 -10.4502 0.0016
20 6 7.4648 -7.9489 1.1627
21 9 7.2703 -8.6642 2.2921
22 6 7.2549 -6.5783 1.1642
23 9 6.8560 -5.9566 2.2955
24 1 -0.4850 0.8401 -0.0004
25 1 3.8753 -0.6796 0.8894
26 1 3.8746 -0.6807 -0.8905
27 1 3.3695 -3.3125 0.0020
28 1 5.1440 -4.8294 0.0030
29 1 7.6662 -3.9214 -0.8868
30 1 7.6653 -3.9207 0.8932
31 1 8.0179 -5.9131 -2.0549
32 1 8.4026 -8.3437 -2.0559
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000875539754.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:22:10
Heat of formation + Delta-G solvation = -111.753301 kcal
Electronic energy + Delta-G solvation = -21340.990037 eV
Core-core repulsion = 17404.131274 eV
Total energy + Delta-G solvation = -3936.858763 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 348.003 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-50.72399 -49.80667 -41.07917 -40.18781 -36.52482 -35.86955 -34.42952 -33.49114
-31.63992 -31.25221 -29.70934 -26.95248 -24.24647 -24.10166 -22.98162 -21.95092
-20.07230 -19.11033 -18.56524 -18.39201 -18.12857 -17.68157 -17.30921 -16.56506
-16.36072 -16.16848 -15.98115 -15.64192 -15.44983 -15.06010 -14.82986 -14.42807
-14.32509 -14.15346 -13.77667 -13.66080 -13.15007 -13.01679 -12.67071 -12.49067
-12.01259 -11.90920 -11.63944 -11.51166 -11.34664 -10.89918 -10.37535 -10.01054
-10.00230 -9.68868 -8.38074 -6.45062 -0.58361 -0.33184 0.22960 1.35717
1.37578 1.51010 1.71382 2.16665 2.20691 2.30839 2.45176 2.97684
3.05208 3.26046 3.40276 3.49608 3.70379 4.08801 4.16646 4.53034
4.59134 4.73378 4.78760 4.81645 4.99875 5.07845 5.26556 5.35912
5.41854 5.54952 5.93980 6.25671 6.57087 7.13643 7.23589 7.63389
8.76690
Molecular weight = 348.00amu
Principal moments of inertia in cm(-1)
A = 0.028860 B = 0.002114 C = 0.002091
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 969.954195 B =13240.782404 C =13387.484727
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.025 3.975
3 Si 0.939 3.061
4 H -0.263 1.263
5 H -0.275 1.275
6 H -0.260 1.260
7 C -0.546 4.546
8 H 0.058 0.942
9 C 0.251 3.749
10 N -0.722 5.722
11 C 0.699 3.301
12 O -0.639 6.639
13 N -0.733 5.733
14 C 0.180 3.820
15 C -0.094 4.094
16 C -0.055 4.055
17 C -0.058 4.058
18 C -0.106 4.106
19 Br -0.011 7.011
20 C 0.073 3.927
21 F -0.126 7.126
22 C 0.075 3.925
23 F -0.132 7.132
24 H 0.272 0.728
25 H 0.010 0.990
26 H 0.014 0.986
27 H 0.404 0.596
28 H 0.408 0.592
29 H 0.102 0.898
30 H 0.067 0.933
31 H 0.188 0.812
32 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.433 -24.492 -4.132 32.807
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.175 4.175
3 Si 0.763 3.237
4 H -0.187 1.187
5 H -0.200 1.200
6 H -0.184 1.184
7 C -0.584 4.584
8 H 0.076 0.924
9 C 0.127 3.873
10 N -0.375 5.375
11 C 0.399 3.601
12 O -0.521 6.521
13 N -0.390 5.390
14 C 0.057 3.943
15 C -0.096 4.096
16 C -0.074 4.074
17 C -0.077 4.077
18 C -0.187 4.187
19 Br 0.074 6.926
20 C 0.050 3.950
21 F -0.105 7.105
22 C 0.054 3.946
23 F -0.110 7.110
24 H 0.081 0.919
25 H 0.028 0.972
26 H 0.032 0.968
27 H 0.239 0.761
28 H 0.243 0.757
29 H 0.120 0.880
30 H 0.085 0.915
31 H 0.205 0.795
32 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges 22.064 -24.235 -4.030 33.021
hybrid contribution -0.963 0.481 0.977 1.454
sum 21.101 -23.753 -3.053 31.918
Atomic orbital electron populations
1.69990 1.07740 1.28615 1.50797 1.25607 0.95549 1.02749 0.93580
0.85830 0.79226 0.79119 0.79559 1.18734 1.19999 1.18386 1.21283
0.89985 0.94536 1.52570 0.92415 1.18962 0.92942 0.79714 0.95671
1.45128 1.04655 1.09988 1.77767 1.16099 0.82703 0.83516 0.77800
1.90846 1.56059 1.44744 1.60473 1.44899 1.08025 1.05385 1.80672
1.20003 0.80592 0.89402 1.04333 1.19981 1.01698 0.95547 0.92343
1.21513 0.94386 0.93908 0.97598 1.21536 0.95872 0.93491 0.96846
1.22067 1.07617 0.93600 0.95421 1.96846 1.94964 1.01680 1.99080
1.17457 1.05518 0.88139 0.83841 1.91560 1.92730 1.77420 1.48769
1.17640 1.03925 0.88815 0.84252 1.91564 1.88163 1.82288 1.49007
0.91863 0.97232 0.96835 0.76061 0.75690 0.87960 0.91504 0.79479
0.79646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16
2 C 0.03 1.43 5.47 84.65 0.46 1.89 16
3 Si 0.94 43.98 27.47 68.60 1.88 45.87 16
4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16
5 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
6 H -0.26 -12.08 6.54 99.48 0.65 -11.43 16
7 C -0.55 -30.18 9.83 25.60 0.25 -29.92 16
8 H 0.06 3.36 7.84 -2.91 -0.02 3.33 16
9 C 0.25 12.36 4.50 85.63 0.38 12.75 16
10 N -0.72 -29.02 5.55 -482.30 -2.68 -31.70 16
11 C 0.70 26.10 8.57 179.05 1.53 27.64 16
12 O -0.64 -28.87 16.34 -3.98 -0.07 -28.94 16
13 N -0.73 -18.91 5.55 -482.29 -2.68 -21.59 16
14 C 0.18 3.69 5.49 85.63 0.47 4.16 16
15 C -0.09 -1.41 5.25 -19.82 -0.10 -1.52 16
16 C -0.05 -0.45 9.66 22.27 0.22 -0.23 16
17 C -0.06 -0.45 9.78 22.28 0.22 -0.23 16
18 C -0.11 -1.45 6.23 22.34 0.14 -1.31 16
19 Br -0.01 -0.15 33.28 -20.37 -0.68 -0.83 16
20 C 0.07 1.36 7.27 22.42 0.16 1.52 16
21 F -0.13 -2.82 16.65 44.97 0.75 -2.07 16
22 C 0.08 1.47 7.25 22.41 0.16 1.63 16
23 F -0.13 -3.31 16.66 44.97 0.75 -2.56 16
24 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16
25 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16
26 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16
27 H 0.40 14.27 8.34 -92.71 -0.77 13.49 16
28 H 0.41 8.61 8.48 -92.71 -0.79 7.83 16
29 H 0.10 1.83 7.95 -2.39 -0.02 1.81 16
30 H 0.07 1.61 8.07 -2.39 -0.02 1.59 16
31 H 0.19 0.41 8.00 -2.91 -0.02 0.38 16
32 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16
Total: -1.00 -71.96 315.34 1.07 -70.89
By element:
Atomic # 1 Polarization: 10.46 SS G_CDS: -0.41 Total: 10.05 kcal
Atomic # 6 Polarization: 12.48 SS G_CDS: 3.90 Total: 16.37 kcal
Atomic # 7 Polarization: -103.73 SS G_CDS: -5.06 Total: -108.78 kcal
Atomic # 8 Polarization: -28.87 SS G_CDS: -0.07 Total: -28.94 kcal
Atomic # 9 Polarization: -6.13 SS G_CDS: 1.50 Total: -4.63 kcal
Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.87 kcal
Atomic # 35 Polarization: -0.15 SS G_CDS: -0.68 Total: -0.83 kcal
Total: -71.96 1.07 -70.89 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000875539754.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.860 kcal
(2) G-P(sol) polarization free energy of solvation -71.965 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.753 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds