Wall clock time and date at job start Wed Apr 1 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86806 * 119.99960 * 2 1 4 4 H 1.48494 * 109.46847 * 270.00379 * 3 2 1 5 5 H 1.48504 * 109.46932 * 29.99935 * 3 2 1 6 6 H 1.48490 * 109.46954 * 149.99884 * 3 2 1 7 7 C 1.37875 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99507 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00032 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99511 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99970 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 13 11 16 16 C 1.38255 * 119.99312 * 104.99827 * 15 14 13 17 17 C 1.38203 * 120.07833 * 179.97438 * 16 15 14 18 18 C 1.38330 * 120.06171 * 0.02562 * 17 16 15 19 19 Br 1.89104 * 120.01018 * 180.02562 * 18 17 16 20 20 C 1.38456 * 119.98477 * 0.02562 * 18 17 16 21 21 F 1.35097 * 120.03986 * 179.97438 * 20 18 17 22 22 C 1.38389 * 119.99070 * 284.72684 * 15 14 13 23 23 F 1.35103 * 120.02694 * 359.97406 * 22 15 14 24 24 H 0.97005 * 119.99561 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46995 * 60.00309 * 9 7 2 26 26 H 1.08994 * 109.46942 * 300.00079 * 9 7 2 27 27 H 0.97003 * 120.00113 * 0.02562 * 10 9 7 28 28 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 29 29 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 30 30 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 31 31 H 1.07998 * 119.96002 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.96875 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 5.3250 -2.8215 0.0016 12 8 6.1151 -1.8973 0.0003 13 7 5.7742 -4.0921 0.0023 14 6 7.2146 -4.3598 0.0032 15 6 7.4489 -5.8485 0.0045 16 6 7.8629 -6.4840 -1.1514 17 6 8.0788 -7.8491 -1.1520 18 6 7.8805 -8.5826 0.0039 19 35 8.1770 -10.4502 0.0016 20 6 7.4648 -7.9489 1.1627 21 9 7.2703 -8.6642 2.2921 22 6 7.2549 -6.5783 1.1642 23 9 6.8560 -5.9566 2.2955 24 1 -0.4850 0.8401 -0.0004 25 1 3.8753 -0.6796 0.8894 26 1 3.8746 -0.6807 -0.8905 27 1 3.3695 -3.3125 0.0020 28 1 5.1440 -4.8294 0.0030 29 1 7.6662 -3.9214 -0.8868 30 1 7.6653 -3.9207 0.8932 31 1 8.0179 -5.9131 -2.0549 32 1 8.4026 -8.3437 -2.0559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875539754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:10 Heat of formation + Delta-G solvation = -111.753301 kcal Electronic energy + Delta-G solvation = -21340.990037 eV Core-core repulsion = 17404.131274 eV Total energy + Delta-G solvation = -3936.858763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.003 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.72399 -49.80667 -41.07917 -40.18781 -36.52482 -35.86955 -34.42952 -33.49114 -31.63992 -31.25221 -29.70934 -26.95248 -24.24647 -24.10166 -22.98162 -21.95092 -20.07230 -19.11033 -18.56524 -18.39201 -18.12857 -17.68157 -17.30921 -16.56506 -16.36072 -16.16848 -15.98115 -15.64192 -15.44983 -15.06010 -14.82986 -14.42807 -14.32509 -14.15346 -13.77667 -13.66080 -13.15007 -13.01679 -12.67071 -12.49067 -12.01259 -11.90920 -11.63944 -11.51166 -11.34664 -10.89918 -10.37535 -10.01054 -10.00230 -9.68868 -8.38074 -6.45062 -0.58361 -0.33184 0.22960 1.35717 1.37578 1.51010 1.71382 2.16665 2.20691 2.30839 2.45176 2.97684 3.05208 3.26046 3.40276 3.49608 3.70379 4.08801 4.16646 4.53034 4.59134 4.73378 4.78760 4.81645 4.99875 5.07845 5.26556 5.35912 5.41854 5.54952 5.93980 6.25671 6.57087 7.13643 7.23589 7.63389 8.76690 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.028860 B = 0.002114 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.954195 B =13240.782404 C =13387.484727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.025 3.975 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.251 3.749 10 N -0.722 5.722 11 C 0.699 3.301 12 O -0.639 6.639 13 N -0.733 5.733 14 C 0.180 3.820 15 C -0.094 4.094 16 C -0.055 4.055 17 C -0.058 4.058 18 C -0.106 4.106 19 Br -0.011 7.011 20 C 0.073 3.927 21 F -0.126 7.126 22 C 0.075 3.925 23 F -0.132 7.132 24 H 0.272 0.728 25 H 0.010 0.990 26 H 0.014 0.986 27 H 0.404 0.596 28 H 0.408 0.592 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.188 0.812 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.433 -24.492 -4.132 32.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.763 3.237 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.127 3.873 10 N -0.375 5.375 11 C 0.399 3.601 12 O -0.521 6.521 13 N -0.390 5.390 14 C 0.057 3.943 15 C -0.096 4.096 16 C -0.074 4.074 17 C -0.077 4.077 18 C -0.187 4.187 19 Br 0.074 6.926 20 C 0.050 3.950 21 F -0.105 7.105 22 C 0.054 3.946 23 F -0.110 7.110 24 H 0.081 0.919 25 H 0.028 0.972 26 H 0.032 0.968 27 H 0.239 0.761 28 H 0.243 0.757 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.205 0.795 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 22.064 -24.235 -4.030 33.021 hybrid contribution -0.963 0.481 0.977 1.454 sum 21.101 -23.753 -3.053 31.918 Atomic orbital electron populations 1.69990 1.07740 1.28615 1.50797 1.25607 0.95549 1.02749 0.93580 0.85830 0.79226 0.79119 0.79559 1.18734 1.19999 1.18386 1.21283 0.89985 0.94536 1.52570 0.92415 1.18962 0.92942 0.79714 0.95671 1.45128 1.04655 1.09988 1.77767 1.16099 0.82703 0.83516 0.77800 1.90846 1.56059 1.44744 1.60473 1.44899 1.08025 1.05385 1.80672 1.20003 0.80592 0.89402 1.04333 1.19981 1.01698 0.95547 0.92343 1.21513 0.94386 0.93908 0.97598 1.21536 0.95872 0.93491 0.96846 1.22067 1.07617 0.93600 0.95421 1.96846 1.94964 1.01680 1.99080 1.17457 1.05518 0.88139 0.83841 1.91560 1.92730 1.77420 1.48769 1.17640 1.03925 0.88815 0.84252 1.91564 1.88163 1.82288 1.49007 0.91863 0.97232 0.96835 0.76061 0.75690 0.87960 0.91504 0.79479 0.79646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16 2 C 0.03 1.43 5.47 84.65 0.46 1.89 16 3 Si 0.94 43.98 27.47 68.60 1.88 45.87 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.26 -12.08 6.54 99.48 0.65 -11.43 16 7 C -0.55 -30.18 9.83 25.60 0.25 -29.92 16 8 H 0.06 3.36 7.84 -2.91 -0.02 3.33 16 9 C 0.25 12.36 4.50 85.63 0.38 12.75 16 10 N -0.72 -29.02 5.55 -482.30 -2.68 -31.70 16 11 C 0.70 26.10 8.57 179.05 1.53 27.64 16 12 O -0.64 -28.87 16.34 -3.98 -0.07 -28.94 16 13 N -0.73 -18.91 5.55 -482.29 -2.68 -21.59 16 14 C 0.18 3.69 5.49 85.63 0.47 4.16 16 15 C -0.09 -1.41 5.25 -19.82 -0.10 -1.52 16 16 C -0.05 -0.45 9.66 22.27 0.22 -0.23 16 17 C -0.06 -0.45 9.78 22.28 0.22 -0.23 16 18 C -0.11 -1.45 6.23 22.34 0.14 -1.31 16 19 Br -0.01 -0.15 33.28 -20.37 -0.68 -0.83 16 20 C 0.07 1.36 7.27 22.42 0.16 1.52 16 21 F -0.13 -2.82 16.65 44.97 0.75 -2.07 16 22 C 0.08 1.47 7.25 22.41 0.16 1.63 16 23 F -0.13 -3.31 16.66 44.97 0.75 -2.56 16 24 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 25 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 26 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 27 H 0.40 14.27 8.34 -92.71 -0.77 13.49 16 28 H 0.41 8.61 8.48 -92.71 -0.79 7.83 16 29 H 0.10 1.83 7.95 -2.39 -0.02 1.81 16 30 H 0.07 1.61 8.07 -2.39 -0.02 1.59 16 31 H 0.19 0.41 8.00 -2.91 -0.02 0.38 16 32 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 Total: -1.00 -71.96 315.34 1.07 -70.89 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -0.41 Total: 10.05 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 3.90 Total: 16.37 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -5.06 Total: -108.78 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.07 Total: -28.94 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 1.50 Total: -4.63 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.87 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.68 Total: -0.83 kcal Total: -71.96 1.07 -70.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.860 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds