Wall clock time and date at job start Wed Apr 1 2020 05:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48499 * 109.47350 * 270.00099 * 3 2 1 5 5 H 1.48497 * 109.47273 * 30.00295 * 3 2 1 6 6 H 1.48502 * 109.46867 * 150.00104 * 3 2 1 7 7 C 1.37878 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00343 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99653 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00200 * 180.02562 * 10 9 7 12 12 O 1.21593 * 120.00032 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00257 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99968 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47123 * 179.97438 * 14 13 11 16 16 C 1.38220 * 119.99389 * 260.27751 * 15 14 13 17 17 C 1.38397 * 120.01105 * 180.27102 * 16 15 14 18 18 F 1.35105 * 120.00818 * 179.70130 * 17 16 15 19 19 C 1.38563 * 119.99134 * 359.72565 * 17 16 15 20 20 Br 1.89095 * 120.00866 * 179.97438 * 19 17 16 21 21 C 1.38235 * 119.98250 * 359.97438 * 19 17 16 22 22 C 1.38434 * 119.99091 * 79.99757 * 15 14 13 23 23 F 1.35104 * 119.99393 * 0.02562 * 22 15 14 24 24 H 0.97003 * 120.00402 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47562 * 60.00168 * 9 7 2 26 26 H 1.08996 * 109.47783 * 299.99535 * 9 7 2 27 27 H 0.97002 * 119.99554 * 359.97438 * 10 9 7 28 28 H 0.97002 * 119.99497 * 359.97438 * 13 11 10 29 29 H 1.09003 * 109.47624 * 59.99565 * 14 13 11 30 30 H 1.08998 * 109.47493 * 299.98997 * 14 13 11 31 31 H 1.08006 * 119.99419 * 359.97438 * 16 15 14 32 32 H 1.07999 * 120.00595 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3250 -2.8214 -0.0009 12 8 6.1151 -1.8972 -0.0014 13 7 5.7743 -4.0921 -0.0013 14 6 7.2146 -4.3597 -0.0018 15 6 7.4490 -5.8484 -0.0016 16 6 7.7566 -6.4993 1.1783 17 6 7.9774 -7.8655 1.1780 18 9 8.2840 -8.5007 2.3303 19 6 7.8845 -8.5819 -0.0044 20 35 8.1868 -10.4485 -0.0056 21 6 7.5707 -7.9316 -1.1832 22 6 7.3504 -6.5646 -1.1822 23 9 7.0447 -5.9288 -2.3344 24 1 -0.4851 0.8400 -0.0004 25 1 3.8752 -0.6803 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.3696 -3.3124 -0.0002 28 1 5.1439 -4.8294 -0.0013 29 1 7.6661 -3.9210 0.8881 30 1 7.6654 -3.9208 -0.8919 31 1 7.8294 -5.9408 2.0999 32 1 7.4978 -8.4896 -2.1050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875539891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:17 Heat of formation + Delta-G solvation = -90.033601 kcal Electronic energy + Delta-G solvation = -21220.908298 eV Core-core repulsion = 17284.991372 eV Total energy + Delta-G solvation = -3935.916927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.003 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.50379 -49.39629 -39.92758 -39.09805 -35.30258 -34.20032 -32.89283 -32.27379 -31.03150 -30.24670 -27.96305 -25.92898 -23.78842 -22.46586 -21.80336 -20.40962 -18.59029 -18.03047 -17.91921 -17.67502 -16.56378 -16.35721 -16.00662 -15.73813 -15.17993 -14.92879 -14.77113 -14.42727 -14.17514 -13.96550 -13.48284 -13.40326 -13.06025 -12.96441 -12.84852 -12.36367 -12.03664 -11.65290 -11.37073 -10.99213 -10.93498 -10.76532 -9.97982 -9.81485 -9.58082 -9.46861 -9.11245 -8.99794 -8.76406 -8.06551 -6.20945 -4.23064 0.04589 0.31084 0.82500 2.48871 3.23730 3.28568 3.35344 3.43122 3.43704 3.57537 3.72303 3.87632 4.00510 4.34173 4.38149 4.73459 4.89611 4.99996 5.03477 5.12727 5.14707 5.36021 5.53092 5.64600 6.01342 6.55652 6.70141 7.10336 7.19858 7.36401 7.50407 8.26216 8.64803 8.79329 9.13551 9.39825 10.91001 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.002090 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.078125 B =13396.882585 C =13461.435830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.720 5.720 11 C 0.697 3.303 12 O -0.601 6.601 13 N -0.752 5.752 14 C 0.181 3.819 15 C -0.093 4.093 16 C -0.098 4.098 17 C 0.117 3.883 18 F -0.118 7.118 19 C -0.102 4.102 20 Br -0.014 7.014 21 C -0.101 4.101 22 C 0.117 3.883 23 F -0.117 7.117 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.019 0.981 27 H 0.393 0.607 28 H 0.395 0.605 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.121 -23.959 0.056 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.372 5.372 11 C 0.397 3.603 12 O -0.480 6.480 13 N -0.410 5.410 14 C 0.057 3.943 15 C -0.095 4.095 16 C -0.118 4.118 17 C 0.095 3.905 18 F -0.096 7.096 19 C -0.183 4.183 20 Br 0.072 6.928 21 C -0.122 4.122 22 C 0.096 3.904 23 F -0.095 7.095 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.226 0.774 28 H 0.228 0.772 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.178 0.822 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 19.771 -23.617 0.057 30.800 hybrid contribution -0.357 0.460 -0.066 0.586 sum 19.414 -23.157 -0.009 30.218 Atomic orbital electron populations 1.69877 1.06224 1.27435 1.49494 1.24783 0.94789 0.99179 0.93885 0.86808 0.80590 0.83172 0.79070 1.19843 1.20941 1.18418 1.21086 0.88532 0.95204 1.53261 0.90292 1.19383 0.94859 0.77479 0.96713 1.45397 1.03576 1.11176 1.77072 1.16045 0.83679 0.82320 0.78236 1.90879 1.55353 1.43011 1.58801 1.45056 1.06333 1.07021 1.82627 1.19873 0.82611 0.87546 1.04293 1.20050 1.00706 0.97243 0.91489 1.21026 0.99603 0.91716 0.99466 1.17279 1.01361 0.90503 0.81324 1.91595 1.90028 1.81742 1.46234 1.21726 1.08865 0.93029 0.94727 1.96834 1.94990 1.01848 1.99172 1.20973 0.99987 0.92879 0.98339 1.17405 1.00719 0.89896 0.82344 1.91611 1.89980 1.81625 1.46310 0.92258 0.95834 0.96279 0.77377 0.77191 0.89744 0.89841 0.82197 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.93 16 7 C -0.54 -14.84 9.83 -34.44 -0.34 -15.18 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.24 5.86 4.50 -5.19 -0.02 5.84 16 10 N -0.72 -14.54 5.55 -66.41 -0.37 -14.91 16 11 C 0.70 13.25 8.57 -86.92 -0.74 12.51 16 12 O -0.60 -13.75 16.34 5.28 0.09 -13.67 16 13 N -0.75 -10.12 5.55 -66.41 -0.37 -10.49 16 14 C 0.18 2.01 5.52 -5.19 -0.03 1.98 16 15 C -0.09 -0.80 5.25 -104.55 -0.55 -1.35 16 16 C -0.10 -0.74 9.65 -39.53 -0.38 -1.12 16 17 C 0.12 0.96 7.27 -39.40 -0.29 0.67 16 18 F -0.12 -1.05 16.73 2.25 0.04 -1.02 16 19 C -0.10 -0.81 6.23 -39.46 -0.25 -1.05 16 20 Br -0.01 -0.11 33.28 -68.01 -2.26 -2.37 16 21 C -0.10 -0.75 9.76 -39.50 -0.39 -1.13 16 22 C 0.12 1.02 7.24 -39.43 -0.29 0.73 16 23 F -0.12 -1.22 16.66 2.25 0.04 -1.18 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 26 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 27 H 0.39 6.95 8.34 -40.82 -0.34 6.61 16 28 H 0.39 4.37 8.48 -40.82 -0.35 4.03 16 29 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 30 H 0.08 1.01 7.94 -51.93 -0.41 0.60 16 31 H 0.16 0.96 8.04 -52.48 -0.42 0.54 16 32 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 315.36 15.07 4.75 4.75 Total: -1.00 -32.29 315.36 -8.05 -40.35 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -2.70 Total: 3.51 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.37 Total: 3.99 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.04 Total: -51.08 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.08 Total: -2.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -2.26 Total: -2.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.29 -8.05 -40.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.688 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds