Wall clock time and date at job start Wed Apr 1 2020 05:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48499 * 109.47350 * 270.00099 * 3 2 1 5 5 H 1.48497 * 109.47273 * 30.00295 * 3 2 1 6 6 H 1.48502 * 109.46867 * 150.00104 * 3 2 1 7 7 C 1.37878 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00343 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99653 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00200 * 180.02562 * 10 9 7 12 12 O 1.21593 * 120.00032 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00257 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99968 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47123 * 179.97438 * 14 13 11 16 16 C 1.38220 * 119.99389 * 260.27751 * 15 14 13 17 17 C 1.38397 * 120.01105 * 180.27102 * 16 15 14 18 18 F 1.35105 * 120.00818 * 179.70130 * 17 16 15 19 19 C 1.38563 * 119.99134 * 359.72565 * 17 16 15 20 20 Br 1.89095 * 120.00866 * 179.97438 * 19 17 16 21 21 C 1.38235 * 119.98250 * 359.97438 * 19 17 16 22 22 C 1.38434 * 119.99091 * 79.99757 * 15 14 13 23 23 F 1.35104 * 119.99393 * 0.02562 * 22 15 14 24 24 H 0.97003 * 120.00402 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47562 * 60.00168 * 9 7 2 26 26 H 1.08996 * 109.47783 * 299.99535 * 9 7 2 27 27 H 0.97002 * 119.99554 * 359.97438 * 10 9 7 28 28 H 0.97002 * 119.99497 * 359.97438 * 13 11 10 29 29 H 1.09003 * 109.47624 * 59.99565 * 14 13 11 30 30 H 1.08998 * 109.47493 * 299.98997 * 14 13 11 31 31 H 1.08006 * 119.99419 * 359.97438 * 16 15 14 32 32 H 1.07999 * 120.00595 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 5.3250 -2.8214 -0.0009 12 8 6.1151 -1.8972 -0.0014 13 7 5.7743 -4.0921 -0.0013 14 6 7.2146 -4.3597 -0.0018 15 6 7.4490 -5.8484 -0.0016 16 6 7.7566 -6.4993 1.1783 17 6 7.9774 -7.8655 1.1780 18 9 8.2840 -8.5007 2.3303 19 6 7.8845 -8.5819 -0.0044 20 35 8.1868 -10.4485 -0.0056 21 6 7.5707 -7.9316 -1.1832 22 6 7.3504 -6.5646 -1.1822 23 9 7.0447 -5.9288 -2.3344 24 1 -0.4851 0.8400 -0.0004 25 1 3.8752 -0.6803 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.3696 -3.3124 -0.0002 28 1 5.1439 -4.8294 -0.0013 29 1 7.6661 -3.9210 0.8881 30 1 7.6654 -3.9208 -0.8919 31 1 7.8294 -5.9408 2.0999 32 1 7.4978 -8.4896 -2.1050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875539891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:17 Heat of formation + Delta-G solvation = -111.989863 kcal Electronic energy + Delta-G solvation = -21221.860393 eV Core-core repulsion = 17284.991372 eV Total energy + Delta-G solvation = -3936.869022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.003 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.16630 -50.14283 -41.06729 -40.14520 -36.54482 -35.88525 -34.43611 -33.60169 -31.67405 -31.13191 -29.69251 -26.96732 -24.44606 -24.09463 -22.81991 -21.95186 -20.06632 -18.82083 -18.69025 -18.50615 -18.18551 -17.47604 -17.08277 -16.59066 -16.54962 -16.27217 -15.64075 -15.54340 -15.32637 -15.02423 -14.90376 -14.49906 -14.36515 -14.05016 -14.00623 -13.61951 -13.42780 -13.01440 -12.67680 -12.33167 -12.03494 -11.90333 -11.63421 -11.53010 -11.34491 -10.89805 -10.37218 -10.27552 -9.79176 -9.68458 -8.37735 -6.44589 -0.62588 -0.30599 0.21381 1.35965 1.37815 1.50955 1.67127 2.13319 2.19988 2.30992 2.75501 2.91298 2.98110 3.18390 3.31646 3.50380 3.74949 4.13628 4.22728 4.37031 4.50117 4.59240 4.75145 4.79305 4.88831 5.08263 5.27006 5.34409 5.40035 5.55373 5.94792 6.26334 6.57633 7.14377 7.24372 7.63945 8.76995 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.002090 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.078125 B =13396.882585 C =13461.435830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.721 5.721 11 C 0.699 3.301 12 O -0.640 6.640 13 N -0.731 5.731 14 C 0.180 3.820 15 C -0.092 4.092 16 C -0.087 4.087 17 C 0.111 3.889 18 F -0.122 7.122 19 C -0.104 4.104 20 Br -0.010 7.010 21 C -0.093 4.093 22 C 0.111 3.889 23 F -0.129 7.129 24 H 0.272 0.728 25 H 0.013 0.987 26 H 0.010 0.990 27 H 0.405 0.595 28 H 0.409 0.591 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.177 0.823 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.375 -24.724 0.207 32.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.375 5.375 11 C 0.399 3.601 12 O -0.522 6.522 13 N -0.389 5.389 14 C 0.057 3.943 15 C -0.094 4.094 16 C -0.107 4.107 17 C 0.090 3.910 18 F -0.101 7.101 19 C -0.185 4.185 20 Br 0.076 6.924 21 C -0.113 4.113 22 C 0.090 3.910 23 F -0.107 7.107 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.028 0.972 27 H 0.240 0.760 28 H 0.245 0.755 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.195 0.805 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 21.034 -24.462 0.207 32.263 hybrid contribution -0.723 0.536 -0.110 0.906 sum 20.312 -23.926 0.097 31.385 Atomic orbital electron populations 1.69981 1.07726 1.28611 1.50802 1.25594 0.95537 1.02712 0.93608 0.85843 0.79320 0.79205 0.79442 1.19060 1.19919 1.18218 1.21280 0.89964 0.94545 1.52530 0.92333 1.18964 0.92955 0.79734 0.95658 1.45113 1.04621 1.09987 1.77742 1.16104 0.82713 0.83514 0.77806 1.90851 1.56087 1.44790 1.60467 1.44874 1.07900 1.05419 1.80692 1.19954 0.80721 0.89351 1.04280 1.19746 1.01940 0.95681 0.91991 1.21109 0.98401 0.91519 0.99636 1.17361 1.01649 0.90739 0.81266 1.91588 1.90121 1.81840 1.46509 1.21840 1.08479 0.93343 0.94801 1.96851 1.94932 1.01451 1.99165 1.21087 0.99007 0.92341 0.98887 1.17520 1.01140 0.90382 0.81910 1.91586 1.90208 1.81929 1.47007 0.91867 0.96912 0.97209 0.75994 0.75521 0.88985 0.90754 0.80538 0.80729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 2 C 0.03 1.45 5.47 84.66 0.46 1.91 16 3 Si 0.94 43.86 27.47 68.60 1.88 45.75 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -11.91 6.54 99.48 0.65 -11.26 16 7 C -0.55 -29.96 9.83 25.60 0.25 -29.71 16 8 H 0.06 3.38 7.84 -2.91 -0.02 3.35 16 9 C 0.25 12.28 4.50 85.63 0.38 12.66 16 10 N -0.72 -28.66 5.55 -482.28 -2.68 -31.34 16 11 C 0.70 25.87 8.57 179.06 1.53 27.40 16 12 O -0.64 -28.86 16.34 -4.01 -0.07 -28.93 16 13 N -0.73 -18.54 5.55 -482.29 -2.68 -21.22 16 14 C 0.18 3.72 5.52 85.64 0.47 4.19 16 15 C -0.09 -1.40 5.25 -19.82 -0.10 -1.50 16 16 C -0.09 -1.11 9.65 22.30 0.22 -0.89 16 17 C 0.11 1.59 7.27 22.39 0.16 1.75 16 18 F -0.12 -1.96 16.73 44.97 0.75 -1.21 16 19 C -0.10 -1.42 6.23 22.35 0.14 -1.28 16 20 Br -0.01 -0.13 33.28 -20.37 -0.68 -0.81 16 21 C -0.09 -1.18 9.76 22.32 0.22 -0.96 16 22 C 0.11 1.73 7.24 22.37 0.16 1.90 16 23 F -0.13 -2.52 16.66 44.97 0.75 -1.77 16 24 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 25 H 0.01 0.66 7.20 -2.38 -0.02 0.65 16 26 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 27 H 0.40 14.02 8.34 -92.71 -0.77 13.24 16 28 H 0.41 8.24 8.48 -92.71 -0.79 7.46 16 29 H 0.09 1.81 8.01 -2.39 -0.02 1.79 16 30 H 0.07 1.72 7.94 -2.39 -0.02 1.70 16 31 H 0.18 1.64 8.04 -2.91 -0.02 1.61 16 32 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -68.37 315.36 1.08 -67.30 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -0.41 Total: 11.99 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 3.90 Total: 15.48 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -5.06 Total: -107.81 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.07 Total: -28.93 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 1.50 Total: -2.97 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.68 Total: -0.81 kcal Total: -68.37 1.08 -67.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.692 kcal (2) G-P(sol) polarization free energy of solvation -68.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds