Wall clock time and date at job start Wed Apr 1 2020 05:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99582 * 2 1 4 4 O 1.20822 * 120.00025 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99643 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47348 * 180.02562 * 5 3 2 7 7 N 1.46492 * 109.47474 * 180.02562 * 6 5 3 8 8 C 1.36947 * 119.99785 * 269.50763 * 7 6 5 9 9 H 1.08001 * 120.00259 * 326.10318 * 8 7 6 10 10 C 1.38808 * 119.99542 * 146.09574 * 8 7 6 11 11 N 1.31614 * 120.00608 * 336.58848 * 10 8 7 12 12 Si 1.86807 * 119.99686 * 156.58923 * 10 8 7 13 13 H 1.48499 * 109.47003 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47038 * 120.00021 * 12 10 8 15 15 H 1.48498 * 109.47051 * 240.00162 * 12 10 8 16 16 C 1.46500 * 120.00466 * 89.51069 * 7 6 5 17 17 C 1.50701 * 109.46931 * 89.99898 * 16 7 6 18 18 N 1.29001 * 124.90405 * 90.00541 * 17 16 7 19 19 C 1.31811 * 117.13294 * 179.97438 * 18 17 16 20 20 C 1.33736 * 114.46650 * 359.97438 * 19 18 17 21 21 Br 1.89108 * 126.03809 * 179.97438 * 20 19 18 22 22 S 1.70973 * 124.90609 * 270.00178 * 17 16 7 23 23 H 1.08998 * 109.47478 * 299.99398 * 1 2 3 24 24 H 1.09000 * 109.47662 * 59.99949 * 1 2 3 25 25 H 1.09005 * 109.46879 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47229 * 60.00330 * 5 3 2 27 27 H 1.08996 * 109.47667 * 300.00324 * 5 3 2 28 28 H 1.09000 * 109.46833 * 59.99908 * 6 5 3 29 29 H 1.09005 * 109.47022 * 300.00751 * 6 5 3 30 30 H 0.97000 * 120.00193 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.46786 * 330.00378 * 16 7 6 32 32 H 1.09001 * 109.47039 * 210.00250 * 16 7 6 33 33 H 1.08001 * 122.76592 * 179.72869 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0001 2.7422 0.0011 7 7 5.4630 2.8189 0.0011 8 6 6.1462 2.8645 1.1870 9 1 5.7168 3.3713 2.0385 10 6 7.3907 2.2591 1.2946 11 7 7.7207 1.2828 0.4760 12 14 8.5972 2.8302 2.6015 13 1 7.9898 3.9340 3.3874 14 1 8.9203 1.6974 3.5057 15 1 9.8409 3.3135 1.9496 16 6 6.1951 2.8469 -1.2676 17 6 6.3716 4.2754 -1.7142 18 7 7.3729 5.0273 -1.4040 19 6 7.3721 6.2563 -1.8806 20 6 6.3100 6.5568 -2.6357 21 35 5.9776 8.2171 -3.4778 22 16 5.2740 5.1334 -2.7052 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.9563 0.7807 -0.8892 27 1 3.9557 0.7810 0.8907 28 1 3.6100 3.2360 0.8911 29 1 3.6105 3.2366 -0.8889 30 1 8.5902 0.8595 0.5515 31 1 5.6340 2.2968 -2.0230 32 1 7.1730 2.3847 -1.1330 33 1 8.1619 6.9635 -1.6748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877710888.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:22 Heat of formation + Delta-G solvation = -18.745984 kcal Electronic energy + Delta-G solvation = -20085.822676 eV Core-core repulsion = 16706.837399 eV Total energy + Delta-G solvation = -3378.985277 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.11829 -39.12446 -36.59366 -35.87028 -32.25527 -32.07821 -30.58443 -28.95985 -27.45762 -26.45523 -24.57373 -23.46441 -21.45333 -20.13587 -18.99435 -17.91965 -17.32902 -16.75051 -16.27182 -16.16402 -15.15215 -14.81449 -14.47630 -14.06335 -13.74655 -13.41177 -13.19062 -12.95742 -12.77550 -12.24843 -12.12001 -11.61923 -11.46382 -11.36256 -11.06386 -10.91900 -10.66518 -10.63484 -10.38110 -10.33458 -10.20806 -10.13017 -10.02338 -9.00870 -8.79405 -8.71308 -8.36426 -7.02162 -6.06529 -3.57607 0.99968 1.26843 1.96752 2.29282 2.55963 3.01673 3.28581 3.34250 3.41927 3.44502 4.35344 4.79692 5.07843 5.16603 5.17589 5.22692 5.41222 5.56879 5.61526 5.68616 5.71139 5.90900 6.19440 6.24726 6.50234 6.54987 6.62408 6.80313 7.24907 7.63735 8.06143 8.17323 8.32743 8.85788 9.50576 10.00541 10.95814 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.009149 B = 0.004182 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.566095 B = 6694.226886 C = 9273.530057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.517 6.517 5 C -0.130 4.130 6 C 0.157 3.843 7 N -0.558 5.558 8 C -0.266 4.266 9 H 0.068 0.932 10 C 0.027 3.973 11 N -0.876 5.876 12 Si 0.903 3.097 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.283 1.283 16 C 0.195 3.805 17 C 0.099 3.901 18 N -0.469 5.469 19 C 0.095 3.905 20 C -0.279 4.279 21 Br -0.002 7.002 22 S 0.112 5.888 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.261 0.739 31 H 0.056 0.944 32 H 0.138 0.862 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.710 4.864 -7.742 11.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.306 3.694 4 O -0.405 6.405 5 C -0.170 4.170 6 C 0.030 3.970 7 N -0.276 5.276 8 C -0.395 4.395 9 H 0.086 0.914 10 C -0.175 4.175 11 N -0.517 5.517 12 Si 0.732 3.268 13 H -0.200 1.200 14 H -0.216 1.216 15 H -0.209 1.209 16 C 0.065 3.935 17 C -0.182 4.182 18 N -0.184 5.184 19 C -0.062 4.062 20 C -0.480 4.480 21 Br 0.080 6.920 22 S 0.366 5.634 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.468 5.151 -8.173 12.211 hybrid contribution 1.174 0.751 1.007 1.719 sum -6.295 5.903 -7.166 11.217 Atomic orbital electron populations 1.23167 0.77544 1.03077 1.02188 1.86589 1.22629 1.34563 1.84378 1.24552 0.92836 0.80784 0.71238 1.90619 1.67559 1.36379 1.45962 1.22331 0.84347 1.04125 1.06191 1.20851 0.84615 0.90826 1.00705 1.43856 0.99839 1.81882 1.01998 1.19111 1.01102 1.29463 0.89807 0.91405 1.25057 0.99784 0.94536 0.98111 1.69879 1.21771 1.20604 1.39435 0.86236 0.81396 0.78361 0.80795 1.20034 1.21623 1.20884 1.20120 1.03250 0.83427 0.86744 1.29778 0.90303 1.04346 0.93758 1.66534 1.25397 1.03229 1.23203 1.21948 0.96807 0.93491 0.93947 1.27412 1.05174 0.99039 1.16338 1.96569 1.95815 1.20923 1.78664 1.83978 1.27281 1.03098 1.49069 0.92230 0.92268 0.88645 0.88309 0.87021 0.92112 0.93489 0.92914 0.92564 0.84567 0.81220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.39 10.57 -39.27 -0.41 -5.81 16 3 C 0.46 7.69 7.96 36.00 0.29 7.97 16 4 O -0.52 -9.62 15.73 -18.75 -0.29 -9.92 16 5 C -0.13 -2.24 6.13 -27.88 -0.17 -2.41 16 6 C 0.16 3.04 4.96 -4.05 -0.02 3.02 16 7 N -0.56 -12.38 2.44 -174.61 -0.43 -12.81 16 8 C -0.27 -6.62 9.48 -15.06 -0.14 -6.76 16 9 H 0.07 1.74 7.93 -52.49 -0.42 1.32 16 10 C 0.03 0.69 4.94 -17.43 -0.09 0.61 16 11 N -0.88 -22.61 11.34 55.49 0.63 -21.98 16 12 Si 0.90 20.87 29.61 -169.99 -5.03 15.83 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C 0.20 4.13 5.87 -5.19 -0.03 4.10 16 17 C 0.10 1.99 6.97 -13.47 -0.09 1.89 16 18 N -0.47 -9.86 10.54 -11.84 -0.12 -9.98 16 19 C 0.09 1.69 11.30 -19.14 -0.22 1.47 16 20 C -0.28 -4.61 7.08 29.15 0.21 -4.40 16 21 Br 0.00 -0.03 34.09 -68.01 -2.32 -2.34 16 22 S 0.11 1.89 23.18 -107.50 -2.49 -0.60 16 23 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 24 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 27 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 28 H 0.06 1.23 7.99 -51.93 -0.42 0.82 16 29 H 0.05 0.87 8.03 -51.93 -0.42 0.46 16 30 H 0.26 6.55 8.31 -40.82 -0.34 6.22 16 31 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 32 H 0.14 3.31 5.33 -51.93 -0.28 3.03 16 33 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -27.69 328.49 -8.34 -36.03 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.61 Total: -0.31 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 0.80 Total: 6.94 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.08 Total: -44.77 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.71 Total: -15.73 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.83 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.49 Total: -0.60 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.32 Total: -2.34 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.69 -8.34 -36.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710888.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.280 kcal (2) G-P(sol) polarization free energy of solvation -27.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds