Wall clock time and date at job start Wed Apr 1 2020 05:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99582 * 2 1 4 4 O 1.20822 * 120.00025 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99643 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47348 * 180.02562 * 5 3 2 7 7 N 1.46492 * 109.47474 * 180.02562 * 6 5 3 8 8 C 1.36947 * 119.99785 * 269.50763 * 7 6 5 9 9 H 1.08001 * 120.00259 * 326.10318 * 8 7 6 10 10 C 1.38808 * 119.99542 * 146.09574 * 8 7 6 11 11 N 1.31614 * 120.00608 * 336.58848 * 10 8 7 12 12 Si 1.86807 * 119.99686 * 156.58923 * 10 8 7 13 13 H 1.48499 * 109.47003 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47038 * 120.00021 * 12 10 8 15 15 H 1.48498 * 109.47051 * 240.00162 * 12 10 8 16 16 C 1.46500 * 120.00466 * 89.51069 * 7 6 5 17 17 C 1.50701 * 109.46931 * 89.99898 * 16 7 6 18 18 N 1.29001 * 124.90405 * 90.00541 * 17 16 7 19 19 C 1.31811 * 117.13294 * 179.97438 * 18 17 16 20 20 C 1.33736 * 114.46650 * 359.97438 * 19 18 17 21 21 Br 1.89108 * 126.03809 * 179.97438 * 20 19 18 22 22 S 1.70973 * 124.90609 * 270.00178 * 17 16 7 23 23 H 1.08998 * 109.47478 * 299.99398 * 1 2 3 24 24 H 1.09000 * 109.47662 * 59.99949 * 1 2 3 25 25 H 1.09005 * 109.46879 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47229 * 60.00330 * 5 3 2 27 27 H 1.08996 * 109.47667 * 300.00324 * 5 3 2 28 28 H 1.09000 * 109.46833 * 59.99908 * 6 5 3 29 29 H 1.09005 * 109.47022 * 300.00751 * 6 5 3 30 30 H 0.97000 * 120.00193 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.46786 * 330.00378 * 16 7 6 32 32 H 1.09001 * 109.47039 * 210.00250 * 16 7 6 33 33 H 1.08001 * 122.76592 * 179.72869 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0001 2.7422 0.0011 7 7 5.4630 2.8189 0.0011 8 6 6.1462 2.8645 1.1870 9 1 5.7168 3.3713 2.0385 10 6 7.3907 2.2591 1.2946 11 7 7.7207 1.2828 0.4760 12 14 8.5972 2.8302 2.6015 13 1 7.9898 3.9340 3.3874 14 1 8.9203 1.6974 3.5057 15 1 9.8409 3.3135 1.9496 16 6 6.1951 2.8469 -1.2676 17 6 6.3716 4.2754 -1.7142 18 7 7.3729 5.0273 -1.4040 19 6 7.3721 6.2563 -1.8806 20 6 6.3100 6.5568 -2.6357 21 35 5.9776 8.2171 -3.4778 22 16 5.2740 5.1334 -2.7052 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.9563 0.7807 -0.8892 27 1 3.9557 0.7810 0.8907 28 1 3.6100 3.2360 0.8911 29 1 3.6105 3.2366 -0.8889 30 1 8.5902 0.8595 0.5515 31 1 5.6340 2.2968 -2.0230 32 1 7.1730 2.3847 -1.1330 33 1 8.1619 6.9635 -1.6748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710888.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:22 Heat of formation + Delta-G solvation = -33.576315 kcal Electronic energy + Delta-G solvation = -20086.465768 eV Core-core repulsion = 16706.837399 eV Total energy + Delta-G solvation = -3379.628368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40565 -40.59520 -38.06669 -37.30381 -33.96364 -33.47143 -32.08470 -30.41314 -28.54686 -28.03032 -26.17986 -24.92390 -22.99886 -21.51689 -20.49405 -19.46597 -18.68040 -18.35699 -17.52930 -17.41996 -16.78689 -16.39752 -16.00246 -15.62475 -15.23142 -14.80036 -14.61714 -14.40456 -14.11555 -13.67766 -13.37670 -13.16992 -12.87556 -12.79688 -12.72599 -12.49089 -12.28411 -12.11430 -12.07097 -11.79663 -11.67206 -11.47370 -11.42154 -10.60221 -10.48492 -10.15731 -9.74316 -8.80812 -7.93948 -5.48113 -0.41926 -0.08088 0.61142 0.85308 1.23696 1.45467 1.52678 1.57864 1.78123 1.91372 2.50392 3.20287 3.44010 3.60205 4.03532 4.21039 4.21999 4.26796 4.36138 4.37800 4.43880 4.66964 4.71479 4.75756 5.01765 5.09390 5.20184 5.44158 5.52645 5.68537 6.35798 6.79594 6.86804 7.03498 7.69610 8.18252 9.05493 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.009149 B = 0.004182 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.566095 B = 6694.226886 C = 9273.530057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.120 4.120 6 C 0.161 3.839 7 N -0.570 5.570 8 C -0.269 4.269 9 H 0.054 0.946 10 C -0.006 4.006 11 N -0.896 5.896 12 Si 0.945 3.055 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.292 1.292 16 C 0.200 3.800 17 C 0.071 3.929 18 N -0.502 5.502 19 C 0.079 3.921 20 C -0.275 4.275 21 Br 0.035 6.965 22 S 0.166 5.834 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.257 0.743 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 5.634 -8.911 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.317 3.683 4 O -0.429 6.429 5 C -0.160 4.160 6 C 0.035 3.965 7 N -0.289 5.289 8 C -0.399 4.399 9 H 0.072 0.928 10 C -0.206 4.206 11 N -0.538 5.538 12 Si 0.774 3.226 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.219 1.219 16 C 0.069 3.931 17 C -0.209 4.209 18 N -0.217 5.217 19 C -0.077 4.077 20 C -0.476 4.476 21 Br 0.117 6.883 22 S 0.420 5.580 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.149 0.851 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -8.789 5.912 -9.344 14.124 hybrid contribution 1.448 0.651 1.212 1.997 sum -7.341 6.563 -8.132 12.770 Atomic orbital electron populations 1.23535 0.75080 1.05563 1.02471 1.86552 1.24965 1.33168 1.83775 1.24177 0.92383 0.81041 0.70739 1.90611 1.67930 1.37187 1.47160 1.22051 0.85345 1.02520 1.06109 1.20777 0.83225 0.92102 1.00392 1.43873 1.00651 1.82808 1.01558 1.19085 1.01434 1.28809 0.90603 0.92826 1.25440 1.00743 0.94964 0.99455 1.69955 1.21723 1.21512 1.40588 0.85596 0.79740 0.77853 0.79441 1.20329 1.21277 1.21913 1.19878 1.01896 0.84442 0.86850 1.29337 0.91751 1.04214 0.95648 1.66503 1.26516 1.04688 1.24035 1.22218 0.98028 0.92995 0.94462 1.27739 1.04385 1.00377 1.15090 1.96619 1.95582 1.18322 1.77810 1.83681 1.25219 1.02204 1.46903 0.92185 0.91806 0.85130 0.87354 0.88193 0.93526 0.92567 0.93325 0.90606 0.87682 0.79205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.27 10.57 -51.45 -0.54 -10.81 16 3 C 0.47 15.23 7.96 71.23 0.57 15.80 16 4 O -0.54 -19.52 15.73 21.97 0.35 -19.17 16 5 C -0.12 -4.11 6.13 29.85 0.18 -3.93 16 6 C 0.16 6.25 4.96 86.38 0.43 6.67 16 7 N -0.57 -25.57 2.44 -706.35 -1.72 -27.29 16 8 C -0.27 -13.73 9.48 84.03 0.80 -12.93 16 9 H 0.05 2.83 7.93 -2.91 -0.02 2.81 16 10 C -0.01 -0.32 4.94 84.86 0.42 0.10 16 11 N -0.90 -47.30 11.34 21.65 0.25 -47.06 16 12 Si 0.94 43.69 29.61 68.60 2.03 45.72 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 15 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 16 C 0.20 8.51 5.87 85.63 0.50 9.01 16 17 C 0.07 2.80 6.97 88.52 0.62 3.42 16 18 N -0.50 -20.96 10.54 -191.37 -2.02 -22.98 16 19 C 0.08 2.69 11.30 83.67 0.95 3.64 16 20 C -0.28 -8.49 7.08 66.80 0.47 -8.01 16 21 Br 0.03 0.83 34.09 -20.37 -0.69 0.14 16 22 S 0.17 5.31 23.18 -56.49 -1.31 4.00 16 23 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 24 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 25 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 27 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 28 H 0.05 1.91 7.99 -2.39 -0.02 1.90 16 29 H 0.06 2.04 8.03 -2.38 -0.02 2.02 16 30 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 31 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 32 H 0.11 5.23 5.33 -2.39 -0.01 5.22 16 33 H 0.19 5.48 8.06 -2.91 -0.02 5.45 16 Total: -1.00 -59.27 328.49 3.60 -55.67 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.14 Total: 6.29 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 6.13 Total: 15.49 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -3.49 Total: -97.32 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.20 Total: -29.98 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.31 Total: 4.00 kcal Atomic # 35 Polarization: 0.83 SS G_CDS: -0.69 Total: 0.14 kcal Total: -59.27 3.60 -55.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710888.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.090 kcal (2) G-P(sol) polarization free energy of solvation -59.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds