Wall clock time and date at job start Wed Apr 1 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99954 * 2 1 4 4 O 1.20825 * 119.99808 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00198 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47366 * 179.97438 * 5 3 2 7 7 C 1.36947 * 119.99642 * 90.00226 * 6 5 3 8 8 H 1.08003 * 119.99655 * 319.24108 * 7 6 5 9 9 C 1.38808 * 119.99964 * 139.24003 * 7 6 5 10 10 N 1.31613 * 119.99901 * 158.24075 * 9 7 6 11 11 Si 1.86800 * 119.99882 * 338.24204 * 9 7 6 12 12 H 1.48502 * 109.47169 * 95.30955 * 11 9 7 13 13 H 1.48497 * 109.47098 * 215.30702 * 11 9 7 14 14 H 1.48495 * 109.47449 * 335.30865 * 11 9 7 15 15 C 1.46500 * 120.00308 * 270.00428 * 6 5 3 16 16 C 1.52998 * 109.47081 * 87.50995 * 15 6 5 17 17 H 1.08995 * 109.47430 * 51.19559 * 16 15 6 18 18 O 1.42903 * 109.46843 * 291.19651 * 16 15 6 19 19 C 1.50702 * 109.46862 * 171.19899 * 16 15 6 20 20 C 1.35414 * 126.76038 * 263.26266 * 19 16 15 21 21 C 1.41484 * 103.98021 * 179.97438 * 20 19 16 22 22 Br 1.89097 * 126.81585 * 179.97438 * 21 20 19 23 23 N 1.30256 * 106.36800 * 0.02562 * 21 20 19 24 24 O 1.20929 * 111.58306 * 359.72367 * 23 21 20 25 25 H 1.09004 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46984 * 299.99282 * 1 2 3 27 27 H 1.08998 * 109.47305 * 59.99956 * 1 2 3 28 28 H 1.09003 * 109.47017 * 59.99914 * 5 3 2 29 29 H 1.09001 * 109.47262 * 300.00248 * 5 3 2 30 30 H 0.97004 * 119.99935 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47018 * 207.50927 * 15 6 5 32 32 H 1.09001 * 109.46980 * 327.50515 * 15 6 5 33 33 H 0.96705 * 113.99802 * 300.00027 * 18 16 15 34 34 H 1.07995 * 128.01179 * 359.95327 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1763 3.3367 1.1847 8 1 3.4936 3.1804 2.0069 9 6 5.2510 4.2031 1.3299 10 7 5.2217 5.1385 2.2554 11 14 6.7386 4.0416 0.2118 12 1 6.6022 4.9787 -0.9321 13 1 7.9696 4.3685 0.9754 14 1 6.8268 2.6492 -0.2968 15 6 4.1888 3.3820 -1.2700 16 6 2.8635 3.9830 -1.7425 17 1 2.4183 4.5622 -0.9336 18 8 1.9727 2.9323 -2.1225 19 6 3.1134 4.8823 -2.9258 20 6 3.2652 6.2277 -2.9034 21 6 3.4732 6.5708 -4.2602 22 35 3.7586 8.3043 -4.9597 23 7 3.4280 5.4557 -4.9319 24 8 3.2341 4.5073 -4.2071 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7806 0.8891 30 1 5.9729 5.7438 2.3571 31 1 4.9194 4.1787 -1.1294 32 1 4.5566 2.6797 -2.0181 33 1 2.3050 2.3749 -2.8394 34 1 3.2342 6.8863 -2.0481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878166807.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:43 Heat of formation + Delta-G solvation = -31.220556 kcal Electronic energy + Delta-G solvation = -23530.901549 eV Core-core repulsion = 19708.622463 eV Total energy + Delta-G solvation = -3822.279086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 348.020 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -45.02590 -39.59277 -37.71727 -35.75413 -34.92048 -34.34798 -32.28380 -31.86604 -30.78834 -29.27446 -27.71768 -26.28829 -24.14274 -23.42536 -22.04881 -20.88173 -19.97778 -18.07641 -17.70118 -17.13236 -16.79590 -16.13384 -15.83775 -15.60894 -15.43514 -14.82298 -14.53659 -13.85253 -13.56056 -13.43241 -13.14969 -12.90531 -12.58817 -12.32436 -12.05103 -11.97936 -11.62358 -11.41049 -11.31888 -11.00419 -10.81641 -10.60998 -10.46795 -10.12758 -9.96607 -9.87835 -9.81791 -9.58951 -9.31475 -8.75220 -7.16382 -6.22211 -3.72083 1.02251 1.34880 2.00104 3.01459 3.13776 3.18848 3.31817 3.34365 3.41797 4.21867 4.30299 4.63934 4.69939 4.93672 5.06697 5.16691 5.41625 5.44685 5.53074 5.54882 5.58540 5.66119 5.86520 5.87294 5.95494 6.14406 6.26126 6.42797 7.13128 7.74711 7.84762 8.04782 8.11673 8.64795 8.75717 9.42555 9.75818 10.91420 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.004128 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.148525 B = 6782.046403 C = 8419.588545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.380 6.380 3 C 0.418 3.582 4 O -0.464 6.464 5 C 0.160 3.840 6 N -0.565 5.565 7 C -0.283 4.283 8 H 0.082 0.918 9 C 0.049 3.951 10 N -0.884 5.884 11 Si 0.869 3.131 12 H -0.284 1.284 13 H -0.295 1.295 14 H -0.264 1.264 15 C 0.107 3.893 16 C 0.176 3.824 17 H 0.144 0.856 18 O -0.525 6.525 19 C -0.034 4.034 20 C -0.204 4.204 21 C 0.009 3.991 22 Br 0.042 6.958 23 N -0.340 5.340 24 O 0.114 5.886 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.268 0.732 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.359 0.641 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -0.967 -12.006 12.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.298 6.298 3 C 0.256 3.744 4 O -0.346 6.346 5 C 0.030 3.970 6 N -0.284 5.284 7 C -0.411 4.411 8 H 0.100 0.900 9 C -0.154 4.154 10 N -0.522 5.522 11 Si 0.698 3.302 12 H -0.211 1.211 13 H -0.222 1.222 14 H -0.188 1.188 15 C -0.020 4.020 16 C 0.112 3.888 17 H 0.161 0.839 18 O -0.327 6.327 19 C -0.099 4.099 20 C -0.228 4.228 21 C -0.228 4.228 22 Br 0.123 6.877 23 N -0.043 5.043 24 O 0.043 5.957 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.205 0.795 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.878 0.094 -12.947 13.515 hybrid contribution 0.823 0.238 -0.185 0.876 sum -3.055 0.333 -13.131 13.486 Atomic orbital electron populations 1.22990 0.78574 1.02052 1.01891 1.86542 1.21889 1.35824 1.85542 1.25913 0.94117 0.80951 0.73445 1.90623 1.66394 1.35929 1.41696 1.20491 0.85567 0.87618 1.03279 1.43748 1.76591 1.05853 1.02161 1.18727 1.08138 1.23514 0.90721 0.90042 1.25461 0.97320 0.96349 0.96261 1.69867 1.31360 1.16042 1.34947 0.87043 0.84021 0.78998 0.80185 1.21142 1.22197 1.18826 1.22144 0.94072 0.96905 0.88901 1.21767 0.94368 0.85721 0.86910 0.83888 1.86910 1.45350 1.43938 1.56504 1.26313 1.00154 0.96398 0.87036 1.22480 1.08643 0.95171 0.96497 1.25244 1.09715 0.94332 0.93524 1.96744 1.95536 1.09338 1.86067 1.73993 1.17217 0.94741 1.18384 1.84781 1.65205 1.30151 1.15548 0.89547 0.92810 0.92574 0.90265 0.88199 0.92224 0.90695 0.92793 0.79545 0.79918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.38 -6.00 10.57 -39.26 -0.41 -6.42 16 3 C 0.42 7.53 6.99 36.00 0.25 7.79 16 4 O -0.46 -9.77 12.89 -26.68 -0.34 -10.12 16 5 C 0.16 2.77 6.19 -5.20 -0.03 2.74 16 6 N -0.56 -11.76 1.57 -174.61 -0.27 -12.03 16 7 C -0.28 -7.14 9.88 -15.06 -0.15 -7.29 16 8 H 0.08 2.32 8.06 -52.48 -0.42 1.89 16 9 C 0.05 1.28 5.27 -17.43 -0.09 1.19 16 10 N -0.88 -24.84 13.97 55.49 0.78 -24.07 16 11 Si 0.87 19.90 25.17 -169.99 -4.28 15.62 16 12 H -0.28 -6.38 6.70 56.52 0.38 -6.01 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 15 C 0.11 2.00 4.10 -4.04 -0.02 1.98 16 16 C 0.18 3.06 3.08 -27.88 -0.09 2.98 16 17 H 0.14 2.90 8.14 -51.93 -0.42 2.47 16 18 O -0.52 -8.65 9.35 -61.73 -0.58 -9.23 16 19 C -0.03 -0.55 6.33 -35.32 -0.22 -0.78 16 20 C -0.20 -3.26 11.09 -39.35 -0.44 -3.70 16 21 C 0.01 0.14 7.84 -16.98 -0.13 0.00 16 22 Br 0.04 0.54 34.13 -68.01 -2.32 -1.78 16 23 N -0.34 -5.61 12.07 31.68 0.38 -5.23 16 24 O 0.11 1.80 11.15 15.00 0.17 1.97 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 29 H 0.10 1.68 8.04 -51.93 -0.42 1.26 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.08 1.56 3.76 -51.93 -0.20 1.36 16 32 H 0.05 0.86 7.93 -51.93 -0.41 0.45 16 33 H 0.36 4.59 8.99 45.56 0.41 5.00 16 34 H 0.18 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -30.06 316.74 -4.68 -34.74 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -2.72 Total: 5.29 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 0.15 Total: 6.48 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.88 Total: -41.33 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -1.17 Total: -23.79 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.28 Total: 15.62 kcal Atomic # 35 Polarization: 0.54 SS G_CDS: -2.32 Total: -1.78 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.06 -4.68 -34.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878166807.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.520 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds