Wall clock time and date at job start Wed Apr 1 2020 05:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99954 * 2 1 4 4 O 1.20825 * 119.99808 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00198 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47366 * 179.97438 * 5 3 2 7 7 C 1.36947 * 119.99642 * 90.00226 * 6 5 3 8 8 H 1.08003 * 119.99655 * 319.24108 * 7 6 5 9 9 C 1.38808 * 119.99964 * 139.24003 * 7 6 5 10 10 N 1.31613 * 119.99901 * 158.24075 * 9 7 6 11 11 Si 1.86800 * 119.99882 * 338.24204 * 9 7 6 12 12 H 1.48502 * 109.47169 * 95.30955 * 11 9 7 13 13 H 1.48497 * 109.47098 * 215.30702 * 11 9 7 14 14 H 1.48495 * 109.47449 * 335.30865 * 11 9 7 15 15 C 1.46500 * 120.00308 * 270.00428 * 6 5 3 16 16 C 1.52998 * 109.47081 * 87.50995 * 15 6 5 17 17 H 1.08995 * 109.47430 * 51.19559 * 16 15 6 18 18 O 1.42903 * 109.46843 * 291.19651 * 16 15 6 19 19 C 1.50702 * 109.46862 * 171.19899 * 16 15 6 20 20 C 1.35414 * 126.76038 * 263.26266 * 19 16 15 21 21 C 1.41484 * 103.98021 * 179.97438 * 20 19 16 22 22 Br 1.89097 * 126.81585 * 179.97438 * 21 20 19 23 23 N 1.30256 * 106.36800 * 0.02562 * 21 20 19 24 24 O 1.20929 * 111.58306 * 359.72367 * 23 21 20 25 25 H 1.09004 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46984 * 299.99282 * 1 2 3 27 27 H 1.08998 * 109.47305 * 59.99956 * 1 2 3 28 28 H 1.09003 * 109.47017 * 59.99914 * 5 3 2 29 29 H 1.09001 * 109.47262 * 300.00248 * 5 3 2 30 30 H 0.97004 * 119.99935 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47018 * 207.50927 * 15 6 5 32 32 H 1.09001 * 109.46980 * 327.50515 * 15 6 5 33 33 H 0.96705 * 113.99802 * 300.00027 * 18 16 15 34 34 H 1.07995 * 128.01179 * 359.95327 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1763 3.3367 1.1847 8 1 3.4936 3.1804 2.0069 9 6 5.2510 4.2031 1.3299 10 7 5.2217 5.1385 2.2554 11 14 6.7386 4.0416 0.2118 12 1 6.6022 4.9787 -0.9321 13 1 7.9696 4.3685 0.9754 14 1 6.8268 2.6492 -0.2968 15 6 4.1888 3.3820 -1.2700 16 6 2.8635 3.9830 -1.7425 17 1 2.4183 4.5622 -0.9336 18 8 1.9727 2.9323 -2.1225 19 6 3.1134 4.8823 -2.9258 20 6 3.2652 6.2277 -2.9034 21 6 3.4732 6.5708 -4.2602 22 35 3.7586 8.3043 -4.9597 23 7 3.4280 5.4557 -4.9319 24 8 3.2341 4.5073 -4.2071 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7806 0.8891 30 1 5.9729 5.7438 2.3571 31 1 4.9194 4.1787 -1.1294 32 1 4.5566 2.6797 -2.0181 33 1 2.3050 2.3749 -2.8394 34 1 3.2342 6.8863 -2.0481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878166807.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:42 Heat of formation + Delta-G solvation = -51.447225 kcal Electronic energy + Delta-G solvation = -23531.778643 eV Core-core repulsion = 19708.622463 eV Total energy + Delta-G solvation = -3823.156180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 348.020 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.28370 -40.98855 -39.12828 -37.15436 -36.47200 -35.57756 -33.81188 -33.52764 -31.94412 -30.65386 -29.14886 -27.68288 -25.67552 -24.68420 -23.62810 -22.17088 -21.42748 -19.47593 -19.02180 -18.71200 -18.21342 -17.55833 -17.31521 -16.99816 -16.88234 -16.21119 -15.93535 -15.40309 -14.98080 -14.75404 -14.61590 -14.33850 -14.00872 -13.88379 -13.29401 -13.18397 -13.10669 -12.87114 -12.65348 -12.58273 -12.27825 -12.09475 -11.72273 -11.67282 -11.54618 -11.35739 -11.06188 -10.96822 -10.70946 -10.59672 -8.88911 -8.21619 -5.69275 -0.13706 0.08178 0.74402 1.33974 1.47089 1.56734 1.70860 1.78735 2.13076 2.40819 2.88696 3.07203 3.28647 3.42808 3.69517 3.80284 4.10277 4.16157 4.18450 4.40403 4.46299 4.50696 4.60232 4.61908 4.70654 4.82374 4.86525 4.98969 5.80072 5.89143 6.17663 6.67790 6.81667 6.86387 7.31351 7.53143 7.89917 8.96603 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.004128 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.148525 B = 6782.046403 C = 8419.588545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.377 6.377 3 C 0.424 3.576 4 O -0.502 6.502 5 C 0.154 3.846 6 N -0.575 5.575 7 C -0.266 4.266 8 H 0.033 0.967 9 C -0.002 4.002 10 N -0.938 5.938 11 Si 0.933 3.067 12 H -0.277 1.277 13 H -0.308 1.308 14 H -0.239 1.239 15 C 0.104 3.896 16 C 0.196 3.804 17 H 0.108 0.892 18 O -0.532 6.532 19 C -0.035 4.035 20 C -0.211 4.211 21 C 0.002 3.998 22 Br 0.067 6.933 23 N -0.349 5.349 24 O 0.122 5.878 25 H 0.126 0.874 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.266 0.734 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.378 0.622 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 -2.495 -14.424 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.294 6.294 3 C 0.263 3.737 4 O -0.387 6.387 5 C 0.026 3.974 6 N -0.295 5.295 7 C -0.395 4.395 8 H 0.051 0.949 9 C -0.200 4.200 10 N -0.579 5.579 11 Si 0.760 3.240 12 H -0.204 1.204 13 H -0.237 1.237 14 H -0.162 1.162 15 C -0.022 4.022 16 C 0.132 3.868 17 H 0.125 0.875 18 O -0.336 6.336 19 C -0.100 4.100 20 C -0.234 4.234 21 C -0.235 4.235 22 Br 0.149 6.851 23 N -0.052 5.052 24 O 0.051 5.949 25 H 0.144 0.856 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.226 0.774 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.428 -1.497 -15.413 15.860 hybrid contribution 0.495 0.669 0.545 0.995 sum -2.933 -0.827 -14.867 15.177 Atomic orbital electron populations 1.23252 0.76777 1.04477 1.01312 1.86512 1.23544 1.34348 1.84956 1.25904 0.94397 0.80965 0.72384 1.90627 1.67237 1.37241 1.43610 1.20756 0.85158 0.85890 1.05593 1.43741 1.77067 1.07310 1.01377 1.18422 1.06617 1.23103 0.91376 0.94938 1.26031 0.99946 0.96019 0.98043 1.70004 1.32202 1.17710 1.38013 0.86010 0.79456 0.80273 0.78271 1.20354 1.23673 1.16178 1.22201 0.94124 0.97212 0.88697 1.21132 0.93443 0.85746 0.86501 0.87469 1.86893 1.45276 1.43984 1.57459 1.26023 1.00646 0.96280 0.87036 1.22687 1.08283 0.95406 0.97071 1.25529 1.09170 0.95373 0.93405 1.96769 1.95368 1.07303 1.85692 1.73970 1.17570 0.95078 1.18547 1.84768 1.65060 1.29998 1.15076 0.85610 0.93892 0.92731 0.85779 0.87843 0.92487 0.92655 0.88911 0.77409 0.79362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 10.56 113.37 1.20 2.05 16 2 O -0.38 -11.04 10.57 -51.41 -0.54 -11.58 16 3 C 0.42 14.68 6.99 71.24 0.50 15.18 16 4 O -0.50 -21.08 12.89 29.55 0.38 -20.70 16 5 C 0.15 4.99 6.19 85.63 0.53 5.52 16 6 N -0.58 -23.31 1.57 -706.33 -1.11 -24.42 16 7 C -0.27 -13.71 9.88 84.03 0.83 -12.88 16 8 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 9 C 0.00 -0.11 5.27 84.86 0.45 0.34 16 10 N -0.94 -54.76 13.97 21.65 0.30 -54.45 16 11 Si 0.93 40.83 25.17 68.60 1.73 42.56 16 12 H -0.28 -11.67 6.70 99.48 0.67 -11.01 16 13 H -0.31 -14.08 7.11 99.48 0.71 -13.38 16 14 H -0.24 -9.39 7.11 99.48 0.71 -8.68 16 15 C 0.10 3.66 4.10 86.38 0.35 4.02 16 16 C 0.20 6.63 3.08 29.85 0.09 6.72 16 17 H 0.11 4.46 8.14 -2.39 -0.02 4.44 16 18 O -0.53 -16.60 9.35 -123.64 -1.16 -17.76 16 19 C -0.03 -1.08 6.33 25.03 0.16 -0.92 16 20 C -0.21 -6.52 11.09 22.42 0.25 -6.27 16 21 C 0.00 0.05 7.84 85.73 0.67 0.72 16 22 Br 0.07 1.62 34.13 -20.37 -0.70 0.92 16 23 N -0.35 -10.79 12.07 -55.01 -0.66 -11.45 16 24 O 0.12 3.60 11.15 73.64 0.82 4.42 16 25 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 27 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 28 H 0.12 2.94 7.92 -2.39 -0.02 2.92 16 29 H 0.10 3.29 8.04 -2.39 -0.02 3.27 16 30 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 31 H 0.06 2.20 3.76 -2.39 -0.01 2.19 16 32 H 0.09 2.56 7.93 -2.39 -0.02 2.55 16 33 H 0.38 8.47 8.99 -74.05 -0.67 7.81 16 34 H 0.19 5.49 8.06 -2.91 -0.02 5.47 16 Total: -1.00 -66.65 316.74 4.54 -62.11 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.45 Total: 15.87 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.03 Total: 14.48 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -1.47 Total: -90.32 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -0.50 Total: -45.63 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.73 Total: 42.56 kcal Atomic # 35 Polarization: 1.62 SS G_CDS: -0.70 Total: 0.92 kcal Total: -66.65 4.54 -62.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878166807.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.662 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds