Wall clock time and date at job start Wed Apr 1 2020 05:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34223 * 117.00171 * 2 1 4 4 O 1.20825 * 119.99950 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00251 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47556 * 180.02562 * 5 3 2 7 7 C 1.36935 * 120.00203 * 96.09269 * 6 5 3 8 8 H 1.08002 * 120.00225 * 163.12530 * 7 6 5 9 9 C 1.38814 * 119.99808 * 342.84703 * 7 6 5 10 10 N 1.31618 * 119.99986 * 336.48876 * 9 7 6 11 11 Si 1.86805 * 119.99899 * 156.49202 * 9 7 6 12 12 H 1.48489 * 109.47146 * 89.99904 * 11 9 7 13 13 H 1.48496 * 109.46908 * 210.00188 * 11 9 7 14 14 H 1.48500 * 109.46948 * 329.99729 * 11 9 7 15 15 C 1.46506 * 119.99956 * 276.09563 * 6 5 3 16 16 C 1.50701 * 109.46775 * 269.99788 * 15 6 5 17 17 N 1.29005 * 124.90563 * 90.00212 * 16 15 6 18 18 C 1.31805 * 117.13148 * 179.97438 * 17 16 15 19 19 C 1.50701 * 122.76433 * 179.97438 * 18 17 16 20 20 C 1.33734 * 114.47430 * 359.97438 * 18 17 16 21 21 Br 1.89103 * 126.04506 * 180.02562 * 20 18 17 22 22 S 1.70967 * 124.90451 * 269.69582 * 16 15 6 23 23 H 1.08996 * 109.47679 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47101 * 300.00000 * 1 2 3 25 25 H 1.09000 * 109.47097 * 59.99725 * 1 2 3 26 26 H 1.08996 * 109.47366 * 59.99655 * 5 3 2 27 27 H 1.09011 * 109.46975 * 300.00132 * 5 3 2 28 28 H 0.97003 * 119.99712 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.46570 * 29.99787 * 15 6 5 30 30 H 1.08995 * 109.47184 * 149.99655 * 15 6 5 31 31 H 1.08996 * 109.46984 * 90.02452 * 19 18 17 32 32 H 1.09005 * 109.47021 * 210.02074 * 19 18 17 33 33 H 1.09003 * 109.46839 * 330.02046 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.2971 3.2998 1.1796 8 1 4.8545 4.2249 1.1712 9 6 3.8955 2.7424 2.3858 10 7 2.8644 1.9253 2.4222 11 14 4.8185 3.1523 3.9574 12 1 4.2089 4.3484 4.5918 13 1 4.7393 2.0014 4.8924 14 1 6.2412 3.4327 3.6370 15 6 4.0598 3.4211 -1.2610 16 6 5.4413 3.2748 -1.8450 17 7 5.8041 2.3408 -2.6576 18 6 7.0541 2.3596 -3.0754 19 6 7.6123 1.3307 -4.0245 20 6 7.7861 3.3669 -2.5877 21 35 9.6072 3.7052 -2.9688 22 16 6.7521 4.3269 -1.5323 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.9557 0.7809 -0.8907 27 1 3.9564 0.7804 0.8892 28 1 2.5840 1.5356 3.2651 29 1 3.3251 3.0244 -1.9617 30 1 3.8532 4.4752 -1.0761 31 1 7.4718 1.6692 -5.0510 32 1 8.6761 1.1953 -3.8289 33 1 7.0928 0.3834 -3.8799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878167127.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:23 Heat of formation + Delta-G solvation = -12.300363 kcal Electronic energy + Delta-G solvation = -20543.171107 eV Core-core repulsion = 17164.465333 eV Total energy + Delta-G solvation = -3378.705774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.60898 -39.01463 -36.20596 -34.71840 -32.87627 -31.50214 -30.45431 -28.68731 -27.31991 -26.39819 -25.97305 -23.34557 -21.47968 -19.83814 -19.10599 -17.65367 -16.95928 -16.36674 -15.67481 -15.29457 -15.03217 -14.81344 -14.55609 -13.79023 -13.61215 -13.32034 -13.04287 -12.57844 -12.43635 -12.23661 -12.19977 -11.58681 -11.36525 -11.20832 -11.19644 -11.07627 -10.84836 -10.59104 -10.28848 -10.21728 -10.12764 -9.69340 -9.41225 -9.21437 -8.86528 -8.69214 -8.36640 -7.29088 -6.07911 -3.42690 0.84399 1.16379 1.86284 2.15943 2.97727 3.28380 3.36474 3.39511 3.76609 3.93548 4.35418 4.41443 5.11730 5.20168 5.22227 5.40132 5.62996 5.73210 5.75694 5.82095 5.87197 6.03922 6.09493 6.26296 6.28249 6.43379 6.61231 6.87623 7.53082 7.66339 7.96293 8.02800 8.82145 9.26248 9.51380 9.92360 11.02230 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.003868 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.530977 B = 7237.169927 C = 8557.729329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.381 6.381 3 C 0.467 3.533 4 O -0.503 6.503 5 C 0.187 3.813 6 N -0.547 5.547 7 C -0.274 4.274 8 H 0.082 0.918 9 C 0.013 3.987 10 N -0.891 5.891 11 Si 0.906 3.094 12 H -0.285 1.285 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.209 3.791 16 C 0.085 3.915 17 N -0.479 5.479 18 C 0.115 3.885 19 C -0.084 4.084 20 C -0.282 4.282 21 Br 0.005 6.995 22 S 0.171 5.829 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.112 0.888 28 H 0.260 0.740 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.339 -0.037 -11.227 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.299 6.299 3 C 0.307 3.693 4 O -0.388 6.388 5 C 0.058 3.942 6 N -0.265 5.265 7 C -0.403 4.403 8 H 0.100 0.900 9 C -0.187 4.187 10 N -0.533 5.533 11 Si 0.735 3.265 12 H -0.212 1.212 13 H -0.213 1.213 14 H -0.201 1.201 15 C 0.077 3.923 16 C -0.197 4.197 17 N -0.195 5.195 18 C -0.022 4.022 19 C -0.143 4.143 20 C -0.482 4.482 21 Br 0.087 6.913 22 S 0.427 5.573 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.390 0.871 -10.689 14.254 hybrid contribution 0.015 -0.464 0.663 0.809 sum 9.404 0.407 -10.026 13.752 Atomic orbital electron populations 1.22877 0.79521 1.01459 1.01361 1.86527 1.21175 1.36471 1.85694 1.25267 0.93334 0.80286 0.70408 1.90471 1.66654 1.36404 1.45290 1.20258 0.85640 0.86147 1.02131 1.43824 1.73945 1.07301 1.01457 1.19212 1.30029 1.08530 0.82479 0.90009 1.24853 0.96070 0.99629 0.98106 1.69920 1.22511 1.34582 1.26312 0.86238 0.80039 0.77626 0.82614 1.21165 1.21293 1.20073 1.19545 0.85666 0.98241 0.88799 1.29506 1.03291 0.92426 0.94445 1.66393 1.14860 1.24165 1.14124 1.20293 0.88362 0.95509 0.98060 1.20451 1.00630 0.96558 0.96665 1.27344 0.97979 1.08383 1.14542 1.96570 1.05253 1.95318 1.94130 1.84147 1.02354 1.29016 1.41819 0.90020 0.92758 0.93497 0.92030 0.87066 0.92961 0.90390 0.90047 0.90406 0.90605 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.81 16 2 O -0.38 -8.14 10.56 -39.24 -0.41 -8.56 16 3 C 0.47 11.13 6.17 36.00 0.22 11.35 16 4 O -0.50 -13.34 15.80 -18.75 -0.30 -13.63 16 5 C 0.19 4.30 5.49 -5.20 -0.03 4.27 16 6 N -0.55 -12.73 2.01 -175.98 -0.35 -13.09 16 7 C -0.27 -6.92 9.64 -15.06 -0.15 -7.06 16 8 H 0.08 2.00 7.93 -52.49 -0.42 1.58 16 9 C 0.01 0.35 4.81 -17.43 -0.08 0.27 16 10 N -0.89 -24.30 9.38 55.49 0.52 -23.78 16 11 Si 0.91 20.70 29.62 -169.99 -5.03 15.66 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 15 C 0.21 4.15 6.21 -5.19 -0.03 4.11 16 16 C 0.08 1.54 6.97 -13.46 -0.09 1.45 16 17 N -0.48 -8.61 10.53 -8.04 -0.08 -8.70 16 18 C 0.12 1.82 6.74 -84.18 -0.57 1.25 16 19 C -0.08 -1.01 10.05 36.01 0.36 -0.65 16 20 C -0.28 -4.32 7.05 29.15 0.21 -4.12 16 21 Br 0.00 0.06 33.01 -68.01 -2.25 -2.18 16 22 S 0.17 2.79 23.18 -107.50 -2.49 0.30 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 25 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 26 H 0.06 1.29 8.12 -51.93 -0.42 0.86 16 27 H 0.11 2.75 6.46 -51.92 -0.34 2.41 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.08 1.52 8.07 -51.93 -0.42 1.11 16 30 H 0.08 1.55 8.04 -51.93 -0.42 1.13 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.82 7.36 -51.93 -0.38 0.44 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -29.67 324.09 -8.25 -37.92 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -3.64 Total: -1.50 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 0.90 Total: 12.67 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.08 Total: -45.56 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.71 Total: -22.19 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.49 Total: 0.30 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -2.25 Total: -2.18 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.67 -8.25 -37.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878167127.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.625 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds