Wall clock time and date at job start Wed Apr 1 2020 05:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86805 * 120.00229 * 2 1 4 4 H 1.48498 * 109.46909 * 269.99992 * 3 2 1 5 5 H 1.48496 * 109.47072 * 30.00003 * 3 2 1 6 6 H 1.48500 * 109.46867 * 150.00007 * 3 2 1 7 7 C 1.40055 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.21682 * 120.00075 * 359.72942 * 9 7 2 11 11 N 1.34784 * 119.99916 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99893 * 179.72943 * 11 9 7 13 13 C 1.50699 * 109.46700 * 180.02562 * 12 11 9 14 14 C 1.34993 * 125.49649 * 94.71802 * 13 12 11 15 15 N 1.36305 * 106.77351 * 179.87395 * 14 13 12 16 16 C 1.39625 * 126.86365 * 180.10972 * 15 14 13 17 17 Cl 1.73596 * 120.00228 * 0.29308 * 16 15 14 18 18 C 1.32000 * 119.99640 * 180.28590 * 16 15 14 19 19 C 1.50703 * 119.99927 * 180.02562 * 18 16 15 20 20 Br 1.96608 * 109.47103 * 125.00131 * 19 18 16 21 21 N 1.40324 * 106.26809 * 0.37454 * 15 14 13 22 22 N 1.28763 * 108.01356 * 359.76215 * 21 15 14 23 23 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 24 24 H 0.97005 * 119.99846 * 359.72731 * 11 9 7 25 25 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 26 26 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 27 27 H 1.08003 * 126.61033 * 359.97438 * 14 13 12 28 28 H 1.08000 * 120.00648 * 0.02562 * 18 16 15 29 29 H 1.08996 * 109.47353 * 245.00170 * 19 18 16 30 30 H 1.09000 * 109.46798 * 5.00162 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5382 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0582 -2.4804 0.0071 11 7 1.9489 -3.6478 0.0017 12 6 1.2163 -4.9164 0.0088 13 6 2.1956 -6.0618 0.0079 14 6 2.6412 -6.7130 1.1032 15 7 3.5033 -7.6740 0.6660 16 6 4.2037 -8.5914 1.4518 17 17 4.0101 -8.5825 3.1769 18 6 5.0128 -9.4655 0.8829 19 6 5.7683 -10.4560 1.7309 20 35 5.3916 -12.2799 1.1007 21 7 3.5511 -7.5530 -0.7312 22 7 2.7661 -6.5919 -1.0747 23 1 -0.4850 0.8400 0.0004 24 1 2.9189 -3.6478 -0.0031 25 1 0.5941 -4.9717 0.9020 26 1 0.5853 -4.9767 -0.8779 27 1 2.3662 -6.5124 2.1282 28 1 5.1335 -9.4708 -0.1903 29 1 6.8375 -10.2588 1.6545 30 1 5.4542 -10.3585 2.7701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881310231.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:24 Heat of formation + Delta-G solvation = 75.987498 kcal Electronic energy + Delta-G solvation = -18862.878499 eV Core-core repulsion = 15382.417125 eV Total energy + Delta-G solvation = -3480.461375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.973 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.40077 -38.23611 -37.29554 -35.95873 -33.89986 -33.44084 -32.37032 -31.01613 -30.24866 -27.27044 -26.50431 -24.85476 -23.36675 -21.93299 -19.93533 -19.59846 -18.55974 -17.24406 -16.26766 -15.72546 -15.35224 -15.20166 -14.64601 -14.60942 -14.00505 -13.71700 -13.51944 -13.12829 -13.09553 -12.72848 -12.27612 -12.07727 -11.77218 -11.53152 -11.45930 -11.15935 -11.11931 -10.86303 -10.50006 -10.47462 -10.37518 -10.23994 -9.64362 -9.00998 -8.86006 -7.63619 -7.57052 -6.19758 -4.65093 0.10143 0.71969 1.12596 1.82968 1.96250 2.31741 3.14457 3.21313 3.24450 3.89863 4.10772 4.18065 4.28739 4.46208 4.58028 4.68111 4.83117 4.91689 5.08892 5.26127 5.38158 5.76060 5.82828 6.20075 6.27973 6.39811 7.42895 7.87567 7.92347 8.02467 8.30792 9.01594 9.48456 10.57825 10.75870 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.031763 B = 0.001961 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.309809 B =14272.062769 C =14440.699088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.579 6.579 11 N -0.763 5.763 12 C 0.212 3.788 13 C -0.030 4.030 14 C 0.040 3.960 15 N -0.336 5.336 16 C 0.157 3.843 17 Cl -0.014 7.014 18 C -0.132 4.132 19 C -0.052 4.052 20 Br -0.136 7.136 21 N -0.056 5.056 22 N -0.200 5.200 23 H 0.269 0.731 24 H 0.381 0.619 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.200 0.800 28 H 0.164 0.836 29 H 0.125 0.875 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.665 -24.385 7.404 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.462 6.462 11 N -0.419 5.419 12 C 0.085 3.915 13 C -0.165 4.165 14 C -0.109 4.109 15 N -0.120 5.120 16 C 0.036 3.964 17 Cl 0.014 6.986 18 C -0.157 4.157 19 C -0.168 4.168 20 Br -0.055 7.055 21 N -0.034 5.034 22 N -0.072 5.072 23 H 0.079 0.921 24 H 0.212 0.788 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.217 0.783 28 H 0.181 0.819 29 H 0.143 0.857 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.989 -25.419 6.060 29.182 hybrid contribution 0.653 1.462 1.286 2.054 sum 13.642 -23.957 7.346 28.530 Atomic orbital electron populations 1.70011 1.07035 1.27316 1.35222 1.25702 0.94629 1.00275 0.92619 0.86368 0.80106 0.81375 0.78874 1.19710 1.20455 1.18960 1.20853 0.93581 0.89230 1.54342 0.91436 1.18219 0.87190 0.82170 0.76336 1.90607 1.14003 1.86635 1.54956 1.46203 1.08645 1.04062 1.83032 1.19183 0.90169 0.79576 1.02572 1.22048 1.04511 1.02684 0.87247 1.23482 0.94022 0.91043 1.02305 1.47958 1.31827 1.24111 1.08061 1.20136 0.98509 0.94617 0.83181 1.98453 1.96720 1.97296 1.06117 1.22919 0.96402 0.94182 1.02164 1.23765 1.04125 0.87302 1.01598 1.97486 1.96515 1.20715 1.90775 1.82202 1.19783 1.16431 0.84971 1.74301 1.03968 1.02854 1.26088 0.92062 0.78768 0.91090 0.91025 0.78328 0.81888 0.85666 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.79 11.83 55.55 0.66 -22.14 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 20.00 29.56 -169.99 -5.02 14.98 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -15.20 9.54 -35.63 -0.34 -15.54 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.59 7.75 -12.99 -0.10 15.49 16 10 O -0.58 -18.42 15.02 5.20 0.08 -18.34 16 11 N -0.76 -16.83 5.54 -62.91 -0.35 -17.18 16 12 C 0.21 3.96 6.20 -5.19 -0.03 3.93 16 13 C -0.03 -0.47 6.47 -83.08 -0.54 -1.01 16 14 C 0.04 0.51 10.95 -16.72 -0.18 0.32 16 15 N -0.34 -4.08 3.84 -9.88 -0.04 -4.11 16 16 C 0.16 1.43 7.26 -15.91 -0.12 1.31 16 17 Cl -0.01 -0.10 26.15 -51.86 -1.36 -1.46 16 18 C -0.13 -1.00 9.23 -36.22 -0.33 -1.33 16 19 C -0.05 -0.28 6.91 36.01 0.25 -0.03 16 20 Br -0.14 -0.96 33.92 -68.01 -2.31 -3.27 16 21 N -0.06 -0.82 13.04 60.35 0.79 -0.03 16 22 N -0.20 -3.35 12.33 33.16 0.41 -2.94 16 23 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 24 H 0.38 7.67 8.44 -40.82 -0.34 7.32 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.20 1.92 7.86 -52.48 -0.41 1.51 16 28 H 0.16 1.33 7.59 -52.49 -0.40 0.93 16 29 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.12 0.53 6.03 -51.93 -0.31 0.22 16 LS Contribution 312.82 15.07 4.71 4.71 Total: -1.00 -34.36 312.82 -6.20 -40.56 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -2.28 Total: 3.75 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.49 Total: 5.48 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 1.47 Total: -46.41 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.08 Total: -18.34 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.36 Total: -1.46 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -2.31 Total: -3.27 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.36 -6.20 -40.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881310231.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.547 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds