Wall clock time and date at job start Wed Apr 1 2020 05:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86805 * 120.00229 * 2 1 4 4 H 1.48498 * 109.46909 * 269.99992 * 3 2 1 5 5 H 1.48496 * 109.47072 * 30.00003 * 3 2 1 6 6 H 1.48500 * 109.46867 * 150.00007 * 3 2 1 7 7 C 1.40055 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.21682 * 120.00075 * 359.72942 * 9 7 2 11 11 N 1.34784 * 119.99916 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99893 * 179.72943 * 11 9 7 13 13 C 1.50699 * 109.46700 * 180.02562 * 12 11 9 14 14 C 1.34993 * 125.49649 * 94.71802 * 13 12 11 15 15 N 1.36305 * 106.77351 * 179.87395 * 14 13 12 16 16 C 1.39625 * 126.86365 * 180.10972 * 15 14 13 17 17 Cl 1.73596 * 120.00228 * 0.29308 * 16 15 14 18 18 C 1.32000 * 119.99640 * 180.28590 * 16 15 14 19 19 C 1.50703 * 119.99927 * 180.02562 * 18 16 15 20 20 Br 1.96608 * 109.47103 * 125.00131 * 19 18 16 21 21 N 1.40324 * 106.26809 * 0.37454 * 15 14 13 22 22 N 1.28763 * 108.01356 * 359.76215 * 21 15 14 23 23 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 24 24 H 0.97005 * 119.99846 * 359.72731 * 11 9 7 25 25 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 26 26 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 27 27 H 1.08003 * 126.61033 * 359.97438 * 14 13 12 28 28 H 1.08000 * 120.00648 * 0.02562 * 18 16 15 29 29 H 1.08996 * 109.47353 * 245.00170 * 19 18 16 30 30 H 1.09000 * 109.46798 * 5.00162 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5382 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0582 -2.4804 0.0071 11 7 1.9489 -3.6478 0.0017 12 6 1.2163 -4.9164 0.0088 13 6 2.1956 -6.0618 0.0079 14 6 2.6412 -6.7130 1.1032 15 7 3.5033 -7.6740 0.6660 16 6 4.2037 -8.5914 1.4518 17 17 4.0101 -8.5825 3.1769 18 6 5.0128 -9.4655 0.8829 19 6 5.7683 -10.4560 1.7309 20 35 5.3916 -12.2799 1.1007 21 7 3.5511 -7.5530 -0.7312 22 7 2.7661 -6.5919 -1.0747 23 1 -0.4850 0.8400 0.0004 24 1 2.9189 -3.6478 -0.0031 25 1 0.5941 -4.9717 0.9020 26 1 0.5853 -4.9767 -0.8779 27 1 2.3662 -6.5124 2.1282 28 1 5.1335 -9.4708 -0.1903 29 1 6.8375 -10.2588 1.6545 30 1 5.4542 -10.3585 2.7701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881310231.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:24 Heat of formation + Delta-G solvation = 51.136235 kcal Electronic energy + Delta-G solvation = -18863.956131 eV Core-core repulsion = 15382.417125 eV Total energy + Delta-G solvation = -3481.539006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.973 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.49326 -39.38061 -38.87104 -36.78043 -35.48096 -34.51303 -34.36672 -32.23272 -31.13631 -28.88555 -27.57977 -26.45011 -24.24523 -23.02078 -21.78584 -20.68065 -19.61990 -19.00990 -17.50445 -17.27269 -16.47311 -16.30624 -16.11456 -15.92403 -15.27783 -15.16097 -14.65877 -14.26751 -14.10341 -13.84446 -13.47145 -13.38627 -13.11331 -12.88224 -12.74443 -12.64452 -12.58181 -12.36043 -12.18548 -11.99793 -11.04546 -10.91214 -10.90087 -10.68684 -9.98424 -9.73205 -9.50726 -8.27074 -6.83277 -0.71920 -0.01058 0.46426 1.04157 1.08202 1.18532 1.42878 1.43898 1.59081 2.27575 2.49097 3.07532 3.10118 3.33112 3.54764 3.65256 3.78278 3.82933 3.88177 4.25864 4.42616 4.63478 4.69394 4.77713 4.83989 5.33447 5.34502 5.88236 6.16173 6.26528 6.80485 6.89083 7.51484 8.49416 8.68669 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.031763 B = 0.001961 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.309809 B =14272.062769 C =14440.699088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.030 3.970 3 Si 0.997 3.003 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.542 3.458 10 O -0.628 6.628 11 N -0.750 5.750 12 C 0.219 3.781 13 C -0.049 4.049 14 C 0.064 3.936 15 N -0.324 5.324 16 C 0.127 3.873 17 Cl 0.006 6.994 18 C -0.104 4.104 19 C -0.048 4.048 20 Br -0.149 7.149 21 N -0.068 5.068 22 N -0.233 5.233 23 H 0.275 0.725 24 H 0.392 0.608 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.230 0.770 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.080 -24.783 8.779 30.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.608 4.608 8 H 0.103 0.897 9 C 0.347 3.653 10 O -0.515 6.515 11 N -0.405 5.405 12 C 0.093 3.907 13 C -0.185 4.185 14 C -0.087 4.087 15 N -0.107 5.107 16 C 0.007 3.993 17 Cl 0.034 6.966 18 C -0.129 4.129 19 C -0.163 4.163 20 Br -0.069 7.069 21 N -0.046 5.046 22 N -0.104 5.104 23 H 0.085 0.915 24 H 0.225 0.775 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.246 0.754 28 H 0.176 0.824 29 H 0.171 0.829 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.472 -25.898 7.431 31.070 hybrid contribution -0.012 1.379 0.923 1.659 sum 15.461 -24.520 8.354 30.167 Atomic orbital electron populations 1.70169 1.09420 1.28981 1.36327 1.26938 0.95534 1.04829 0.91259 0.85034 0.78806 0.75231 0.79312 1.18890 1.19658 1.17258 1.21386 0.94644 0.90016 1.54729 0.89671 1.18537 0.86803 0.83956 0.76035 1.90562 1.15978 1.87772 1.57191 1.45842 1.09118 1.04112 1.81417 1.19040 0.90615 0.79262 1.01801 1.21544 1.05569 1.03002 0.88391 1.23762 0.92563 0.89743 1.02602 1.48036 1.31107 1.23905 1.07602 1.20310 0.99746 0.95234 0.84056 1.98461 1.96732 1.97245 1.04179 1.23158 0.94405 0.93005 1.02290 1.23928 1.05397 0.85511 1.01456 1.97508 1.96637 1.21742 1.90980 1.82106 1.19856 1.16242 0.86375 1.74261 1.05068 1.03956 1.27139 0.91505 0.77510 0.90400 0.93321 0.75397 0.82441 0.82943 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.79 11.83 21.84 0.26 -49.53 16 2 C 0.03 1.65 5.50 85.31 0.47 2.12 16 3 Si 1.00 40.68 29.56 68.60 2.03 42.71 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 7 C -0.57 -32.19 9.54 24.83 0.24 -31.95 16 8 H 0.09 4.33 7.85 -2.91 -0.02 4.30 16 9 C 0.54 31.17 7.75 86.36 0.67 31.84 16 10 O -0.63 -41.50 15.02 -4.29 -0.06 -41.56 16 11 N -0.75 -33.65 5.54 -471.16 -2.61 -36.26 16 12 C 0.22 8.41 6.20 85.63 0.53 8.94 16 13 C -0.05 -1.53 6.47 41.58 0.27 -1.26 16 14 C 0.06 1.50 10.95 83.25 0.91 2.41 16 15 N -0.32 -7.33 3.84 -185.16 -0.71 -8.04 16 16 C 0.13 2.01 7.26 82.54 0.60 2.61 16 17 Cl 0.01 0.07 26.15 -2.72 -0.07 0.00 16 18 C -0.10 -1.32 9.23 24.78 0.23 -1.09 16 19 C -0.05 -0.36 6.91 71.24 0.49 0.13 16 20 Br -0.15 -1.83 33.92 -20.37 -0.69 -2.52 16 21 N -0.07 -1.95 13.04 37.02 0.48 -1.47 16 22 N -0.23 -7.86 12.33 -49.02 -0.60 -8.46 16 23 H 0.28 15.10 8.29 -92.71 -0.77 14.33 16 24 H 0.39 15.78 8.44 -92.70 -0.78 15.00 16 25 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.23 3.82 7.86 -2.91 -0.02 3.80 16 28 H 0.16 2.26 7.59 -2.91 -0.02 2.24 16 29 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.13 0.76 6.03 -2.39 -0.01 0.74 16 Total: -1.00 -76.85 312.82 2.85 -74.00 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.43 Total: 17.40 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 4.41 Total: 13.74 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -3.19 Total: -103.76 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -0.06 Total: -41.56 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -0.07 Total: 0.00 kcal Atomic # 35 Polarization: -1.83 SS G_CDS: -0.69 Total: -2.52 kcal Total: -76.85 2.85 -74.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881310231.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.141 kcal (2) G-P(sol) polarization free energy of solvation -76.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds