Wall clock time and date at job start Wed Apr 1 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48501 * 109.46956 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47211 * 300.00160 * 3 2 1 6 6 H 1.48506 * 109.46822 * 59.99895 * 3 2 1 7 7 C 1.38812 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99710 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00040 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47432 * 179.97438 * 10 9 7 12 12 C 1.35348 * 126.74706 * 94.99908 * 11 10 9 13 13 N 1.35319 * 106.17489 * 180.02562 * 12 11 10 14 14 C 1.46495 * 125.86941 * 180.02562 * 13 12 11 15 15 Cl 1.80298 * 115.55143 * 330.67462 * 14 13 12 16 16 C 1.53002 * 117.49533 * 116.37815 * 14 13 12 17 17 C 1.53001 * 117.49947 * 185.00011 * 14 13 12 18 18 H 1.08995 * 117.49772 * 145.00302 * 17 14 13 19 19 C 1.53000 * 117.49608 * 359.97438 * 17 14 13 20 20 C 1.52997 * 109.47060 * 175.00037 * 19 17 14 21 21 Br 1.96598 * 109.47550 * 180.02562 * 20 19 17 22 22 N 1.28717 * 108.25763 * 0.26350 * 13 12 11 23 23 N 1.28628 * 110.18070 * 359.56270 * 22 13 12 24 24 H 0.97004 * 119.99808 * 359.97438 * 1 2 3 25 25 H 0.97008 * 119.99956 * 0.02562 * 9 7 2 26 26 H 1.09008 * 109.47153 * 60.00468 * 10 9 7 27 27 H 1.08995 * 109.47837 * 300.00502 * 10 9 7 28 28 H 1.07998 * 126.91509 * 0.04435 * 12 11 10 29 29 H 1.08998 * 117.50378 * 359.97438 * 16 14 13 30 30 H 1.09001 * 117.49479 * 214.98100 * 16 14 13 31 31 H 1.09002 * 109.47398 * 295.00206 * 19 17 14 32 32 H 1.09001 * 109.47194 * 55.00386 * 19 17 14 33 33 H 1.09002 * 109.47153 * 300.00319 * 20 19 17 34 34 H 1.08998 * 109.47533 * 59.99948 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.0787 -4.8023 -0.0031 12 6 0.6239 -5.4785 -1.0838 13 7 -0.2311 -6.4145 -0.6105 14 6 -0.9708 -7.3879 -1.4175 15 17 -1.3786 -6.8596 -3.0924 16 6 -0.6569 -8.8695 -1.2003 17 6 -1.9775 -8.2852 -0.6949 18 1 -2.8864 -8.5561 -1.2320 19 6 -2.1342 -8.0974 0.8155 20 6 -3.2661 -8.9915 1.3257 21 35 -3.4681 -8.7498 3.2663 22 7 -0.2865 -6.2991 0.6703 23 7 0.4875 -5.3503 1.0643 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3881 -0.0023 26 1 2.6846 -3.7154 0.8873 27 1 2.6847 -3.7138 -0.8926 28 1 0.8901 -5.3060 -2.1162 29 1 0.1002 -9.1200 -0.4572 30 1 -0.6969 -9.5252 -2.0701 31 1 -1.2037 -8.3692 1.3139 32 1 -2.3701 -7.0550 1.0295 33 1 -4.1966 -8.7197 0.8273 34 1 -3.0304 -10.0339 1.1117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881382994.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:26 Heat of formation + Delta-G solvation = 140.045279 kcal Electronic energy + Delta-G solvation = -19790.536784 eV Core-core repulsion = 16448.686258 eV Total energy + Delta-G solvation = -3341.850526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 348.005 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.13460 -38.90071 -36.44948 -34.91757 -33.66135 -32.42754 -31.79913 -29.92110 -29.40286 -25.88438 -24.52394 -23.93771 -22.80308 -21.68496 -21.26736 -20.03220 -17.62162 -17.20030 -16.35893 -15.79110 -15.23923 -14.88668 -14.59986 -14.13690 -13.73225 -13.54854 -13.11094 -13.06294 -12.74902 -12.56224 -12.44148 -12.12705 -11.72644 -11.65158 -11.19107 -11.01590 -10.83768 -10.81773 -10.67053 -10.52723 -10.10556 -10.04944 -10.03357 -9.79302 -9.65319 -8.93040 -8.86640 -6.90798 -5.72540 -3.02471 0.85277 1.44748 1.64324 2.15657 2.79428 2.82768 3.46818 3.52174 3.53701 3.54719 3.84998 4.35912 4.45381 4.52307 4.63915 4.69113 4.85627 4.97133 5.05656 5.24225 5.26390 5.41093 5.59426 5.59730 5.69874 5.96688 6.17096 6.33823 6.59894 6.62227 6.74288 7.72995 8.44331 8.69775 9.56334 10.11477 10.47352 11.50200 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.002853 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.888071 B = 9812.480041 C =11382.604930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.074 0.926 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.001 4.001 12 C -0.029 4.029 13 N -0.278 5.278 14 C 0.150 3.850 15 Cl -0.075 7.075 16 C -0.139 4.139 17 C -0.106 4.106 18 H 0.136 0.864 19 C -0.091 4.091 20 C -0.077 4.077 21 Br -0.155 7.155 22 N -0.087 5.087 23 N -0.242 5.242 24 H 0.255 0.745 25 H 0.386 0.614 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.189 0.811 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 -26.436 -2.938 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.092 0.908 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.138 4.138 12 C -0.179 4.179 13 N -0.071 5.071 14 C 0.038 3.962 15 Cl -0.048 7.048 16 C -0.178 4.178 17 C -0.126 4.126 18 H 0.154 0.846 19 C -0.129 4.129 20 C -0.193 4.193 21 Br -0.074 7.074 22 N -0.065 5.065 23 N -0.110 5.110 24 H 0.064 0.936 25 H 0.219 0.781 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.206 0.794 29 H 0.139 0.861 30 H 0.145 0.855 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.004 -26.716 -1.108 27.911 hybrid contribution 0.448 1.410 -1.818 2.344 sum -7.556 -25.306 -2.926 26.571 Atomic orbital electron populations 1.69698 1.05179 1.25535 1.57530 1.24760 0.95513 0.97721 1.02870 0.86090 0.78781 0.83999 0.77146 1.20449 1.21915 1.21843 1.19269 0.91125 0.83770 1.42921 0.90809 1.42308 1.05995 0.99222 1.89540 1.18967 0.89971 0.81298 0.99409 1.22461 1.02650 1.00559 0.88101 1.23396 0.97774 0.94318 1.02373 1.46518 1.29930 1.24386 1.06272 1.23428 1.03428 0.85682 0.83617 1.98786 1.93475 1.92310 1.20182 1.24200 0.99173 0.89965 1.04483 1.23329 0.95158 0.96922 0.97222 0.84602 1.21638 0.99047 1.01793 0.90443 1.24732 1.02827 1.03869 0.87859 1.97446 1.98414 1.98359 1.13186 1.78425 1.19558 1.17441 0.91095 1.75119 1.06149 1.03764 1.25944 0.93558 0.78078 0.94168 0.94376 0.79391 0.86074 0.85456 0.88764 0.88227 0.88248 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.91 13.06 55.49 0.72 -28.18 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.73 -19.12 5.59 -61.09 -0.34 -19.47 16 10 C 0.23 4.90 6.82 -5.20 -0.04 4.87 16 11 C 0.00 -0.01 6.62 -82.78 -0.55 -0.56 16 12 C -0.03 -0.46 10.99 -17.04 -0.19 -0.64 16 13 N -0.28 -3.90 3.67 -47.92 -0.18 -4.07 16 14 C 0.15 1.49 3.65 -67.93 -0.25 1.24 16 15 Cl -0.07 -0.74 28.71 -51.86 -1.49 -2.23 16 16 C -0.14 -0.88 9.94 -26.73 -0.27 -1.15 16 17 C -0.11 -0.75 5.58 -90.62 -0.51 -1.26 16 18 H 0.14 0.65 8.07 -51.93 -0.42 0.23 16 19 C -0.09 -0.80 3.85 -26.73 -0.10 -0.90 16 20 C -0.08 -0.51 6.56 37.16 0.24 -0.27 16 21 Br -0.15 -1.54 33.93 -68.01 -2.31 -3.85 16 22 N -0.09 -1.42 9.35 60.35 0.56 -0.86 16 23 N -0.24 -4.76 12.41 33.29 0.41 -4.35 16 24 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.39 10.99 7.66 -40.82 -0.31 10.68 16 26 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.19 2.52 8.02 -52.49 -0.42 2.10 16 29 H 0.12 0.81 8.03 -51.93 -0.42 0.39 16 30 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.94 7.22 -51.93 -0.37 0.57 16 32 H 0.10 1.19 7.08 -51.93 -0.37 0.82 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 330.03 15.07 4.97 4.97 Total: -1.00 -33.43 330.03 -8.53 -41.96 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -3.97 Total: 4.54 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.90 Total: -6.11 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 1.18 Total: -56.93 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.49 Total: -2.23 kcal Atomic # 35 Polarization: -1.54 SS G_CDS: -2.31 Total: -3.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.43 -8.53 -41.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881382994.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.008 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds