Wall clock time and date at job start Wed Apr 1 2020 05:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48501 * 109.46956 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47211 * 300.00160 * 3 2 1 6 6 H 1.48506 * 109.46822 * 59.99895 * 3 2 1 7 7 C 1.38812 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99710 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00040 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47432 * 179.97438 * 10 9 7 12 12 C 1.35348 * 126.74706 * 94.99908 * 11 10 9 13 13 N 1.35319 * 106.17489 * 180.02562 * 12 11 10 14 14 C 1.46495 * 125.86941 * 180.02562 * 13 12 11 15 15 Cl 1.80298 * 115.55143 * 330.67462 * 14 13 12 16 16 C 1.53002 * 117.49533 * 116.37815 * 14 13 12 17 17 C 1.53001 * 117.49947 * 185.00011 * 14 13 12 18 18 H 1.08995 * 117.49772 * 145.00302 * 17 14 13 19 19 C 1.53000 * 117.49608 * 359.97438 * 17 14 13 20 20 C 1.52997 * 109.47060 * 175.00037 * 19 17 14 21 21 Br 1.96598 * 109.47550 * 180.02562 * 20 19 17 22 22 N 1.28717 * 108.25763 * 0.26350 * 13 12 11 23 23 N 1.28628 * 110.18070 * 359.56270 * 22 13 12 24 24 H 0.97004 * 119.99808 * 359.97438 * 1 2 3 25 25 H 0.97008 * 119.99956 * 0.02562 * 9 7 2 26 26 H 1.09008 * 109.47153 * 60.00468 * 10 9 7 27 27 H 1.08995 * 109.47837 * 300.00502 * 10 9 7 28 28 H 1.07998 * 126.91509 * 0.04435 * 12 11 10 29 29 H 1.08998 * 117.50378 * 359.97438 * 16 14 13 30 30 H 1.09001 * 117.49479 * 214.98100 * 16 14 13 31 31 H 1.09002 * 109.47398 * 295.00206 * 19 17 14 32 32 H 1.09001 * 109.47194 * 55.00386 * 19 17 14 33 33 H 1.09002 * 109.47153 * 300.00319 * 20 19 17 34 34 H 1.08998 * 109.47533 * 59.99948 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.0787 -4.8023 -0.0031 12 6 0.6239 -5.4785 -1.0838 13 7 -0.2311 -6.4145 -0.6105 14 6 -0.9708 -7.3879 -1.4175 15 17 -1.3786 -6.8596 -3.0924 16 6 -0.6569 -8.8695 -1.2003 17 6 -1.9775 -8.2852 -0.6949 18 1 -2.8864 -8.5561 -1.2320 19 6 -2.1342 -8.0974 0.8155 20 6 -3.2661 -8.9915 1.3257 21 35 -3.4681 -8.7498 3.2663 22 7 -0.2865 -6.2991 0.6703 23 7 0.4875 -5.3503 1.0643 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3881 -0.0023 26 1 2.6846 -3.7154 0.8873 27 1 2.6847 -3.7138 -0.8926 28 1 0.8901 -5.3060 -2.1162 29 1 0.1002 -9.1200 -0.4572 30 1 -0.6969 -9.5252 -2.0701 31 1 -1.2037 -8.3692 1.3139 32 1 -2.3701 -7.0550 1.0295 33 1 -4.1966 -8.7197 0.8273 34 1 -3.0304 -10.0339 1.1117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881382994.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:25 Heat of formation + Delta-G solvation = 118.257760 kcal Electronic energy + Delta-G solvation = -19791.481562 eV Core-core repulsion = 16448.686258 eV Total energy + Delta-G solvation = -3342.795304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 348.005 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.38745 -39.64480 -37.20234 -36.76124 -34.68092 -33.77985 -33.16051 -31.65495 -30.08302 -27.68489 -25.54936 -24.87513 -24.43731 -22.71576 -22.22054 -21.19763 -19.30927 -18.47056 -17.48760 -16.85148 -16.41111 -16.10541 -15.89190 -15.59941 -15.11234 -14.83161 -14.37609 -14.22061 -13.93082 -13.53861 -13.24516 -13.12531 -12.98686 -12.81621 -12.65020 -12.53900 -12.11446 -12.03560 -11.98606 -11.84368 -11.77286 -11.42204 -10.98351 -10.87945 -10.72953 -10.57995 -10.28575 -9.03407 -7.93915 -5.24779 0.02193 0.53115 0.85753 1.19378 1.38549 1.50008 1.51444 1.61723 2.12829 2.59024 2.82595 3.23519 3.29729 3.41457 3.73013 3.91244 3.93758 4.01479 4.12043 4.20269 4.25011 4.40350 4.48749 4.58729 4.75880 4.80478 4.88623 5.05505 5.10316 5.24089 5.49381 5.50885 6.25488 7.32295 7.38485 8.02671 8.28789 9.30266 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.002853 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.888071 B = 9812.480041 C =11382.604930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.077 4.077 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.243 4.243 8 H 0.086 0.914 9 N -0.740 5.740 10 C 0.235 3.765 11 C -0.028 4.028 12 C -0.017 4.017 13 N -0.264 5.264 14 C 0.110 3.890 15 Cl -0.074 7.074 16 C -0.108 4.108 17 C -0.093 4.093 18 H 0.169 0.831 19 C -0.089 4.089 20 C -0.064 4.064 21 Br -0.191 7.191 22 N -0.081 5.081 23 N -0.288 5.288 24 H 0.250 0.750 25 H 0.370 0.630 26 H 0.034 0.966 27 H 0.061 0.939 28 H 0.211 0.789 29 H 0.120 0.880 30 H 0.163 0.837 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 -28.442 -4.659 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.269 4.269 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.375 4.375 8 H 0.103 0.897 9 N -0.382 5.382 10 C 0.108 3.892 11 C -0.165 4.165 12 C -0.168 4.168 13 N -0.057 5.057 14 C 0.000 4.000 15 Cl -0.047 7.047 16 C -0.146 4.146 17 C -0.113 4.113 18 H 0.186 0.814 19 C -0.128 4.128 20 C -0.179 4.179 21 Br -0.111 7.111 22 N -0.060 5.060 23 N -0.155 5.155 24 H 0.059 0.941 25 H 0.201 0.799 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.228 0.772 29 H 0.138 0.862 30 H 0.181 0.819 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.756 -28.778 -2.833 29.939 hybrid contribution 0.348 1.870 -1.350 2.332 sum -7.409 -26.908 -4.183 28.221 Atomic orbital electron populations 1.69872 1.06942 1.26010 1.59567 1.25649 0.96368 1.01368 1.03515 0.84990 0.78410 0.79306 0.76529 1.18458 1.21882 1.22374 1.19742 0.91834 0.84720 1.41165 0.89651 1.42514 1.05462 1.00704 1.89544 1.18985 0.90300 0.80159 0.99804 1.22205 1.03837 1.01186 0.89299 1.23578 0.97036 0.93753 1.02446 1.46824 1.28887 1.24102 1.05898 1.24131 1.06006 0.86218 0.83670 1.98788 1.93488 1.92495 1.19939 1.24398 0.97990 0.87003 1.05217 1.23500 0.96779 0.95108 0.95889 0.81370 1.21493 0.99205 1.00192 0.91887 1.24834 1.02870 1.05064 0.85171 1.97451 1.98439 1.98487 1.16727 1.78350 1.18720 1.16643 0.92280 1.75065 1.07744 1.05390 1.27333 0.94088 0.79877 0.94837 0.92100 0.77197 0.86227 0.81917 0.90210 0.91673 0.86396 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.98 46.91 29.55 68.60 2.03 48.93 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 7 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 8 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.74 -39.68 5.59 -347.19 -1.94 -41.62 16 10 C 0.24 10.01 6.82 85.64 0.58 10.59 16 11 C -0.03 -1.07 6.62 41.60 0.28 -0.79 16 12 C -0.02 -0.53 10.99 83.49 0.92 0.38 16 13 N -0.26 -7.14 3.67 -305.52 -1.12 -8.26 16 14 C 0.11 1.90 3.65 44.99 0.16 2.07 16 15 Cl -0.07 -1.29 28.71 -2.72 -0.08 -1.36 16 16 C -0.11 -0.95 9.94 30.60 0.30 -0.64 16 17 C -0.09 -1.02 5.58 -10.79 -0.06 -1.08 16 18 H 0.17 0.80 8.07 -2.39 -0.02 0.78 16 19 C -0.09 -1.43 3.85 30.59 0.12 -1.31 16 20 C -0.06 -0.71 6.56 71.98 0.47 -0.23 16 21 Br -0.19 -3.71 33.93 -20.37 -0.69 -4.40 16 22 N -0.08 -2.68 9.35 37.02 0.35 -2.33 16 23 N -0.29 -11.65 12.41 -48.60 -0.60 -12.26 16 24 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 25 H 0.37 21.80 7.66 -92.70 -0.71 21.09 16 26 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.21 5.30 8.02 -2.91 -0.02 5.28 16 29 H 0.12 1.20 8.03 -2.39 -0.02 1.18 16 30 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 1.52 7.22 -2.39 -0.02 1.50 16 32 H 0.06 1.55 7.08 -2.39 -0.02 1.53 16 33 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -75.13 330.03 2.73 -72.40 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.42 Total: 18.54 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.08 Total: -8.12 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -3.04 Total: -125.99 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.36 kcal Atomic # 35 Polarization: -3.71 SS G_CDS: -0.69 Total: -4.40 kcal Total: -75.13 2.73 -72.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881382994.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.659 kcal (2) G-P(sol) polarization free energy of solvation -75.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds