Wall clock time and date at job start Wed Apr 1 2020 05:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00260 * 2 1 4 4 H 1.48508 * 109.47014 * 270.00211 * 3 2 1 5 5 H 1.48499 * 109.47376 * 29.99886 * 3 2 1 6 6 H 1.48496 * 109.47597 * 150.00259 * 3 2 1 7 7 C 1.38815 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99821 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00410 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00400 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46949 * 179.97438 * 10 9 7 12 12 C 1.35356 * 126.74948 * 94.71511 * 11 10 9 13 13 N 1.35313 * 106.16949 * 179.84981 * 12 11 10 14 14 C 1.46503 * 125.86140 * 180.11915 * 13 12 11 15 15 Cl 1.80296 * 115.55070 * 330.90488 * 14 13 12 16 16 C 1.53000 * 117.49925 * 116.57907 * 14 13 12 17 17 C 1.53003 * 117.49453 * 185.23736 * 14 13 12 18 18 H 1.09000 * 117.49822 * 359.97438 * 17 14 13 19 19 C 1.52999 * 117.49702 * 145.01853 * 17 14 13 20 20 C 1.53005 * 109.47141 * 185.00028 * 19 17 14 21 21 Br 1.96602 * 109.47018 * 180.02562 * 20 19 17 22 22 N 1.28709 * 108.26873 * 0.41607 * 13 12 11 23 23 N 1.28638 * 110.17640 * 359.73518 * 22 13 12 24 24 H 0.96997 * 119.99631 * 359.97438 * 1 2 3 25 25 H 0.97010 * 119.99691 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.46609 * 59.99978 * 10 9 7 27 27 H 1.09000 * 109.47175 * 299.99772 * 10 9 7 28 28 H 1.08001 * 126.91031 * 359.97438 * 12 11 10 29 29 H 1.08991 * 117.49817 * 214.97170 * 16 14 13 30 30 H 1.09003 * 117.49916 * 0.02562 * 16 14 13 31 31 H 1.09000 * 109.47113 * 304.99907 * 19 17 14 32 32 H 1.09004 * 109.47476 * 65.00010 * 19 17 14 33 33 H 1.09000 * 109.47018 * 299.99937 * 20 19 17 34 34 H 1.08997 * 109.46757 * 59.99928 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.5938 -2.1956 -0.0023 12 6 6.4071 -2.1348 1.0779 13 7 7.6457 -1.8684 0.6025 14 6 8.8594 -1.7141 1.4083 15 17 8.6078 -1.0938 3.0824 16 6 9.9844 -2.7282 1.1923 17 6 10.1395 -1.2928 0.6837 18 1 10.0786 -1.1309 -0.3925 19 6 11.1082 -0.3778 1.4355 20 6 12.2536 0.0267 0.5052 21 35 13.4989 1.2017 1.4715 22 7 7.5731 -1.7677 -0.6786 23 7 6.3627 -1.9576 -1.0707 24 1 -0.4849 0.8400 0.0004 25 1 3.8647 -0.3622 -0.0014 26 1 3.8483 -3.0427 -0.8908 27 1 3.8491 -3.0424 0.8892 28 1 6.1247 -2.2732 2.1111 29 1 10.5727 -3.0201 2.0622 30 1 9.8217 -3.5101 0.4504 31 1 10.5795 0.5147 1.7701 32 1 11.5113 -0.9066 2.2993 33 1 12.7824 -0.8658 0.1706 34 1 11.8506 0.5555 -0.3585 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881382996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:30 Heat of formation + Delta-G solvation = 136.746436 kcal Electronic energy + Delta-G solvation = -19557.840712 eV Core-core repulsion = 16215.847137 eV Total energy + Delta-G solvation = -3341.993575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 348.005 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.27451 -39.05886 -36.48397 -35.22594 -34.06432 -32.49428 -31.92125 -30.37129 -29.63309 -26.24289 -24.69773 -24.14619 -22.54180 -21.56811 -21.49736 -20.14821 -18.26407 -17.56553 -16.47973 -15.78418 -15.64283 -14.98246 -14.52708 -14.32212 -14.05727 -13.77462 -13.20958 -13.13613 -12.78138 -12.66651 -12.61209 -12.24986 -12.02383 -11.73375 -11.65324 -11.29324 -11.00582 -10.96191 -10.88894 -10.69091 -10.41096 -10.32289 -10.16762 -9.85493 -9.59435 -9.13339 -8.90756 -7.24554 -5.76055 -3.12056 0.74201 1.14681 1.48301 2.01426 2.60823 2.71006 3.39734 3.40430 3.45174 3.47970 3.71684 4.17610 4.22872 4.28515 4.47832 4.61488 4.73141 4.82666 4.96316 5.04310 5.12130 5.21342 5.25234 5.45496 5.50092 5.59174 5.70237 6.14709 6.41515 6.50330 6.61000 7.97739 8.42453 8.51910 9.20066 9.92731 10.12373 11.41977 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.017761 B = 0.002399 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.141228 B =11669.487100 C =12349.583021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.094 0.906 9 N -0.750 5.750 10 C 0.238 3.762 11 C -0.008 4.008 12 C -0.028 4.028 13 N -0.277 5.277 14 C 0.149 3.851 15 Cl -0.070 7.070 16 C -0.136 4.136 17 C -0.108 4.108 18 H 0.141 0.859 19 C -0.096 4.096 20 C -0.075 4.075 21 Br -0.158 7.158 22 N -0.090 5.090 23 N -0.242 5.242 24 H 0.260 0.740 25 H 0.363 0.637 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.192 0.808 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.769 -3.390 6.356 33.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.112 0.888 9 N -0.396 5.396 10 C 0.109 3.891 11 C -0.145 4.145 12 C -0.177 4.177 13 N -0.071 5.071 14 C 0.037 3.963 15 Cl -0.043 7.043 16 C -0.175 4.175 17 C -0.129 4.129 18 H 0.159 0.841 19 C -0.134 4.134 20 C -0.191 4.191 21 Br -0.078 7.078 22 N -0.069 5.069 23 N -0.110 5.110 24 H 0.070 0.930 25 H 0.195 0.805 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.209 0.791 29 H 0.147 0.853 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 33.696 -2.759 5.518 34.256 hybrid contribution -0.389 0.931 1.026 1.439 sum 33.307 -1.828 6.544 33.993 Atomic orbital electron populations 1.69697 1.05017 1.25859 1.57419 1.24626 0.95195 0.97126 1.01872 0.86567 0.79083 0.85057 0.77946 1.20926 1.21650 1.20583 1.19029 0.80132 0.94927 1.43276 0.88830 1.42652 1.03964 1.01719 1.91247 1.18945 0.79824 0.90000 1.00327 1.22544 0.99105 1.04689 0.88119 1.23458 0.83637 1.08129 1.02501 1.46531 1.07005 1.47273 1.06245 1.23411 0.80157 1.08988 0.83725 1.98785 1.97222 1.88375 1.19884 1.24215 0.95298 0.93553 1.04421 1.23266 0.91599 0.96340 1.01646 0.84093 1.21521 0.93996 1.00274 0.97594 1.24708 0.95311 0.99700 0.99387 1.97438 1.63595 1.68187 1.78561 1.78292 1.16714 1.20564 0.91298 1.75117 0.95538 1.14444 1.25890 0.93005 0.80479 0.93243 0.93429 0.79106 0.85334 0.85970 0.88991 0.89271 0.87667 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.88 27.73 -169.99 -4.71 18.16 16 4 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 7 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 9 N -0.75 -18.47 5.40 -61.08 -0.33 -18.80 16 10 C 0.24 4.74 6.82 -5.19 -0.04 4.71 16 11 C -0.01 -0.13 6.62 -82.77 -0.55 -0.68 16 12 C -0.03 -0.41 10.99 -17.04 -0.19 -0.59 16 13 N -0.28 -3.68 3.67 -47.92 -0.18 -3.86 16 14 C 0.15 1.37 3.65 -67.93 -0.25 1.12 16 15 Cl -0.07 -0.64 27.65 -51.86 -1.43 -2.07 16 16 C -0.14 -0.78 9.95 -26.69 -0.27 -1.04 16 17 C -0.11 -0.70 5.34 -90.58 -0.48 -1.18 16 18 H 0.14 1.00 7.73 -51.93 -0.40 0.59 16 19 C -0.10 -0.49 4.64 -26.73 -0.12 -0.61 16 20 C -0.08 -0.34 6.56 37.16 0.24 -0.09 16 21 Br -0.16 -1.07 33.93 -68.01 -2.31 -3.38 16 22 N -0.09 -1.42 12.51 60.35 0.75 -0.67 16 23 N -0.24 -4.52 12.41 33.29 0.41 -4.11 16 24 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 25 H 0.36 9.05 5.52 -40.82 -0.23 8.83 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.19 2.34 8.01 -52.49 -0.42 1.92 16 29 H 0.13 0.45 8.03 -51.93 -0.42 0.03 16 30 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.58 8.02 -51.93 -0.42 0.17 16 32 H 0.09 0.38 7.88 -51.93 -0.41 -0.03 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -33.90 330.82 -7.93 -41.83 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.99 Total: 2.00 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.90 Total: -5.38 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 1.44 Total: -56.14 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.71 Total: 18.16 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.43 Total: -2.07 kcal Atomic # 35 Polarization: -1.07 SS G_CDS: -2.31 Total: -3.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.90 -7.93 -41.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881382996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.573 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds