Wall clock time and date at job start Wed Apr 1 2020 05:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00260 * 2 1 4 4 H 1.48508 * 109.47014 * 270.00211 * 3 2 1 5 5 H 1.48499 * 109.47376 * 29.99886 * 3 2 1 6 6 H 1.48496 * 109.47597 * 150.00259 * 3 2 1 7 7 C 1.38815 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99821 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00410 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00400 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46949 * 179.97438 * 10 9 7 12 12 C 1.35356 * 126.74948 * 94.71511 * 11 10 9 13 13 N 1.35313 * 106.16949 * 179.84981 * 12 11 10 14 14 C 1.46503 * 125.86140 * 180.11915 * 13 12 11 15 15 Cl 1.80296 * 115.55070 * 330.90488 * 14 13 12 16 16 C 1.53000 * 117.49925 * 116.57907 * 14 13 12 17 17 C 1.53003 * 117.49453 * 185.23736 * 14 13 12 18 18 H 1.09000 * 117.49822 * 359.97438 * 17 14 13 19 19 C 1.52999 * 117.49702 * 145.01853 * 17 14 13 20 20 C 1.53005 * 109.47141 * 185.00028 * 19 17 14 21 21 Br 1.96602 * 109.47018 * 180.02562 * 20 19 17 22 22 N 1.28709 * 108.26873 * 0.41607 * 13 12 11 23 23 N 1.28638 * 110.17640 * 359.73518 * 22 13 12 24 24 H 0.96997 * 119.99631 * 359.97438 * 1 2 3 25 25 H 0.97010 * 119.99691 * 359.97438 * 9 7 2 26 26 H 1.09000 * 109.46609 * 59.99978 * 10 9 7 27 27 H 1.09000 * 109.47175 * 299.99772 * 10 9 7 28 28 H 1.08001 * 126.91031 * 359.97438 * 12 11 10 29 29 H 1.08991 * 117.49817 * 214.97170 * 16 14 13 30 30 H 1.09003 * 117.49916 * 0.02562 * 16 14 13 31 31 H 1.09000 * 109.47113 * 304.99907 * 19 17 14 32 32 H 1.09004 * 109.47476 * 65.00010 * 19 17 14 33 33 H 1.09000 * 109.47018 * 299.99937 * 20 19 17 34 34 H 1.08997 * 109.46757 * 59.99928 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.5938 -2.1956 -0.0023 12 6 6.4071 -2.1348 1.0779 13 7 7.6457 -1.8684 0.6025 14 6 8.8594 -1.7141 1.4083 15 17 8.6078 -1.0938 3.0824 16 6 9.9844 -2.7282 1.1923 17 6 10.1395 -1.2928 0.6837 18 1 10.0786 -1.1309 -0.3925 19 6 11.1082 -0.3778 1.4355 20 6 12.2536 0.0267 0.5052 21 35 13.4989 1.2017 1.4715 22 7 7.5731 -1.7677 -0.6786 23 7 6.3627 -1.9576 -1.0707 24 1 -0.4849 0.8400 0.0004 25 1 3.8647 -0.3622 -0.0014 26 1 3.8483 -3.0427 -0.8908 27 1 3.8491 -3.0424 0.8892 28 1 6.1247 -2.2732 2.1111 29 1 10.5727 -3.0201 2.0622 30 1 9.8217 -3.5101 0.4504 31 1 10.5795 0.5147 1.7701 32 1 11.5113 -0.9066 2.2993 33 1 12.7824 -0.8658 0.1706 34 1 11.8506 0.5555 -0.3585 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881382996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:30 Heat of formation + Delta-G solvation = 114.632428 kcal Electronic energy + Delta-G solvation = -19558.799647 eV Core-core repulsion = 16215.847137 eV Total energy + Delta-G solvation = -3342.952510 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 348.005 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.44964 -39.69434 -37.18021 -36.96713 -34.97907 -33.86747 -33.18052 -32.04652 -30.10202 -27.95292 -25.61886 -24.58935 -24.41464 -22.80568 -22.19287 -21.15672 -19.87982 -18.91141 -17.57917 -16.63751 -16.38624 -16.25222 -16.05524 -15.79846 -15.01002 -14.87682 -14.41835 -14.38384 -13.98576 -13.70705 -13.41521 -13.21037 -13.10686 -12.93942 -12.74709 -12.57362 -12.25336 -12.16139 -12.01826 -11.89731 -11.83419 -11.53795 -11.04363 -10.94546 -10.76021 -10.67827 -10.39206 -9.34706 -8.04148 -5.37722 -0.03075 0.45342 0.75323 1.14198 1.27985 1.34797 1.37722 1.43952 2.09337 2.45608 2.77003 3.18587 3.21177 3.28645 3.72529 3.78512 3.79415 3.87993 3.95700 4.07105 4.23047 4.32172 4.48451 4.55113 4.73473 4.74208 4.81529 5.00291 5.04564 5.08458 5.37643 5.73642 6.19325 7.03289 7.29382 7.77894 7.97332 9.16943 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.017761 B = 0.002399 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.141228 B =11669.487100 C =12349.583021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.057 4.057 3 Si 0.948 3.052 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.753 5.753 10 C 0.239 3.761 11 C -0.031 4.031 12 C -0.013 4.013 13 N -0.264 5.264 14 C 0.112 3.888 15 Cl -0.070 7.070 16 C -0.108 4.108 17 C -0.095 4.095 18 H 0.136 0.864 19 C -0.091 4.091 20 C -0.068 4.068 21 Br -0.181 7.181 22 N -0.090 5.090 23 N -0.281 5.281 24 H 0.259 0.741 25 H 0.362 0.638 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.215 0.785 29 H 0.158 0.842 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.745 -3.533 7.318 36.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.249 4.249 3 Si 0.776 3.224 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.361 4.361 8 H 0.087 0.913 9 N -0.399 5.399 10 C 0.111 3.889 11 C -0.169 4.169 12 C -0.164 4.164 13 N -0.057 5.057 14 C 0.002 3.998 15 Cl -0.043 7.043 16 C -0.146 4.146 17 C -0.116 4.116 18 H 0.154 0.846 19 C -0.129 4.129 20 C -0.183 4.183 21 Br -0.101 7.101 22 N -0.069 5.069 23 N -0.149 5.149 24 H 0.068 0.932 25 H 0.194 0.806 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.232 0.768 29 H 0.176 0.824 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.143 0.857 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 36.742 -2.928 6.481 37.424 hybrid contribution -1.223 0.853 0.748 1.668 sum 35.519 -2.075 7.228 36.307 Atomic orbital electron populations 1.69850 1.06765 1.26640 1.59627 1.25365 0.96011 1.00731 1.02750 0.85511 0.78408 0.80600 0.77832 1.21052 1.21549 1.18724 1.19047 0.81957 0.93955 1.41158 0.91254 1.42681 1.02664 1.03492 1.91090 1.18951 0.81267 0.88024 1.00633 1.22195 0.98227 1.07206 0.89270 1.23673 0.83694 1.06384 1.02679 1.46815 1.07960 1.45049 1.05844 1.24067 0.79229 1.12756 0.83742 1.98787 1.97210 1.88569 1.19686 1.24414 0.92252 0.92841 1.05138 1.23320 0.89708 0.97312 1.01257 0.84576 1.21499 0.93702 0.99680 0.97993 1.24768 0.94749 0.99977 0.98855 1.97446 1.64408 1.69139 1.79105 1.78181 1.15617 1.20559 0.92511 1.75067 0.96609 1.16116 1.27104 0.93209 0.80576 0.94075 0.91479 0.76796 0.82404 0.85744 0.90145 0.87904 0.85706 0.87431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.08 13.97 21.65 0.30 -62.78 16 2 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 3 Si 0.95 47.37 27.73 68.60 1.90 49.27 16 4 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.26 -12.18 6.52 99.48 0.65 -11.53 16 7 C -0.23 -13.30 10.47 84.04 0.88 -12.42 16 8 H 0.07 4.26 8.06 -2.91 -0.02 4.24 16 9 N -0.75 -36.75 5.40 -347.17 -1.87 -38.62 16 10 C 0.24 9.40 6.82 85.63 0.58 9.99 16 11 C -0.03 -1.08 6.62 41.60 0.28 -0.81 16 12 C -0.01 -0.37 10.99 83.49 0.92 0.55 16 13 N -0.26 -6.40 3.67 -305.51 -1.12 -7.52 16 14 C 0.11 1.73 3.65 44.99 0.16 1.89 16 15 Cl -0.07 -1.08 27.65 -2.72 -0.08 -1.16 16 16 C -0.11 -0.82 9.95 30.62 0.30 -0.52 16 17 C -0.10 -0.94 5.34 -10.77 -0.06 -1.00 16 18 H 0.14 1.56 7.73 -2.39 -0.02 1.54 16 19 C -0.09 -0.66 4.64 30.60 0.14 -0.52 16 20 C -0.07 -0.43 6.56 71.98 0.47 0.05 16 21 Br -0.18 -2.15 33.93 -20.37 -0.69 -2.84 16 22 N -0.09 -2.70 12.51 37.02 0.46 -2.24 16 23 N -0.28 -10.31 12.41 -48.59 -0.60 -10.91 16 24 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 25 H 0.36 17.63 5.52 -92.70 -0.51 17.12 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.22 4.65 8.01 -2.91 -0.02 4.63 16 29 H 0.16 0.32 8.03 -2.39 -0.02 0.30 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.84 8.02 -2.39 -0.02 0.82 16 32 H 0.10 0.50 7.88 -2.38 -0.02 0.48 16 33 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -73.87 330.82 3.01 -70.85 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.56 Total: 11.66 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 4.15 Total: -5.72 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -2.83 Total: -122.07 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.90 Total: 49.27 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Atomic # 35 Polarization: -2.15 SS G_CDS: -0.69 Total: -2.84 kcal Total: -73.87 3.01 -70.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881382996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.484 kcal (2) G-P(sol) polarization free energy of solvation -73.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds