Wall clock time and date at job start Wed Apr 1 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34200 * 125.73052 * 2 1 4 4 C 1.38150 * 107.42291 * 179.84900 * 3 2 1 5 5 C 1.47250 * 126.43096 * 180.16298 * 4 3 2 6 6 O 1.21533 * 119.99697 * 180.27478 * 5 4 3 7 7 O 1.34753 * 120.00504 * 0.27549 * 5 4 3 8 8 C 1.45198 * 117.00480 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47229 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 8 7 11 11 S 1.81001 * 109.47321 * 179.97438 * 10 9 8 12 12 C 1.76200 * 100.00055 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99661 * 0.02562 * 12 11 10 14 14 C 1.38800 * 120.00002 * 180.02562 * 12 11 10 15 15 N 1.31630 * 119.99920 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00010 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47128 * 59.99824 * 16 14 12 18 18 H 1.48496 * 109.46766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46932 * 300.00078 * 16 14 12 20 20 C 1.41422 * 107.12956 * 0.41486 * 4 3 2 21 21 Br 1.89100 * 126.00040 * 179.76629 * 20 4 3 22 22 N 1.30494 * 107.98807 * 359.74587 * 20 4 3 23 23 H 1.09001 * 109.47060 * 269.71773 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.71262 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.71344 * 1 2 3 26 26 H 1.08000 * 126.29069 * 0.02562 * 3 2 1 27 27 H 1.09005 * 109.46849 * 300.00564 * 8 7 5 28 28 H 1.08999 * 109.46573 * 59.99563 * 8 7 5 29 29 H 1.08997 * 109.47119 * 299.99689 * 9 8 7 30 30 H 1.08997 * 109.47211 * 60.00133 * 9 8 7 31 31 H 1.08994 * 109.47337 * 300.00323 * 10 9 8 32 32 H 1.09005 * 109.46904 * 60.00237 * 10 9 8 33 33 H 0.96995 * 120.00287 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2488 1.0894 0.0000 4 6 3.5603 0.6554 0.0035 5 6 4.7626 1.5055 0.0081 6 8 5.8664 0.9969 0.0058 7 8 4.6392 2.8474 0.0149 8 6 5.8670 3.6224 0.0197 9 6 5.5283 5.1144 0.0278 10 6 6.8222 5.9310 0.0323 11 16 6.4216 7.6961 0.0410 12 6 8.0460 8.3786 0.0441 13 1 8.9061 7.7254 0.0403 14 6 8.2203 9.7556 0.0514 15 7 7.1720 10.5516 0.0565 16 14 9.9425 10.4791 0.0554 17 1 10.6701 10.0318 -1.1593 18 1 9.8565 11.9615 0.0626 19 1 10.6698 10.0190 1.2656 20 6 3.5313 -0.7585 -0.0042 21 35 5.0380 -1.9011 -0.0099 22 7 2.2821 -1.1359 -0.0062 23 1 -0.3633 -0.0051 1.0277 24 1 -0.3633 0.8926 -0.5094 25 1 -0.3634 -0.8874 -0.5183 26 1 1.9154 2.1167 0.0004 27 1 6.4479 3.3772 0.9089 28 1 6.4491 3.3863 -0.8710 29 1 4.9473 5.3598 -0.8611 30 1 4.9464 5.3500 0.9188 31 1 7.4037 5.6856 0.9208 32 1 7.4037 5.6953 -0.8591 33 1 7.2937 11.5139 0.0620 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885683295.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:53 Heat of formation + Delta-G solvation = -14.011689 kcal Electronic energy + Delta-G solvation = -18779.331560 eV Core-core repulsion = 15400.551577 eV Total energy + Delta-G solvation = -3378.779982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.93784 -39.96324 -36.53967 -34.21987 -33.49074 -32.44332 -31.50585 -30.98771 -27.58635 -26.47240 -25.45417 -23.41290 -21.61707 -21.25810 -20.56373 -18.11680 -17.45334 -17.08922 -16.67644 -16.09111 -16.01059 -15.01439 -14.81710 -14.55637 -14.33501 -13.77291 -13.59120 -13.51289 -13.13734 -12.64882 -12.63530 -12.11644 -11.71909 -11.47866 -11.32492 -11.11098 -11.02796 -10.94718 -10.87471 -10.67145 -10.23951 -10.13661 -9.81624 -9.63182 -9.28212 -9.06771 -8.36326 -6.56503 -6.24718 -3.95704 0.71967 0.91858 1.33946 1.99636 2.66633 2.92452 3.22670 3.23372 3.27809 3.55768 3.84531 4.20361 4.21743 4.54203 4.66401 4.77270 4.83292 4.96959 5.11293 5.16551 5.23799 5.34405 5.42004 5.53401 5.80252 5.93198 6.13954 6.18080 6.46428 6.48049 6.69038 6.73798 7.59111 7.81318 8.34902 9.21719 10.83418 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.001993 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.181843 B =14047.129654 C =15276.260198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.351 5.351 3 C 0.139 3.861 4 C -0.254 4.254 5 C 0.536 3.464 6 O -0.495 6.495 7 O -0.355 6.355 8 C 0.076 3.924 9 C -0.097 4.097 10 C -0.114 4.114 11 S -0.125 6.125 12 C -0.518 4.518 13 H 0.073 0.927 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.124 3.876 21 Br 0.063 6.937 22 N -0.266 5.266 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.204 0.796 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.567 -25.412 -0.208 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.130 5.130 3 C -0.013 4.013 4 C -0.269 4.269 5 C 0.379 3.621 6 O -0.383 6.383 7 O -0.272 6.272 8 C 0.001 3.999 9 C -0.136 4.136 10 C -0.263 4.263 11 S 0.103 5.897 12 C -0.666 4.666 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.506 5.506 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.122 4.122 21 Br 0.144 6.856 22 N -0.089 5.089 23 H 0.105 0.895 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.221 0.779 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.713 -26.216 -0.209 30.565 hybrid contribution 2.497 0.833 0.014 2.632 sum -13.217 -25.383 -0.194 28.618 Atomic orbital electron populations 1.22181 0.72267 1.05666 1.04624 1.48456 1.07626 1.03474 1.53438 1.23435 0.89489 0.94415 0.93952 1.19227 0.92086 0.91198 1.24377 1.19725 0.87710 0.81266 0.73434 1.90899 1.26978 1.74719 1.45686 1.86477 1.38565 1.17977 1.84195 1.23260 0.83401 0.90475 1.02781 1.21278 0.98370 0.89728 1.04184 1.23181 0.98384 1.01325 1.03407 1.84615 1.14367 0.93806 1.96892 1.22657 0.91207 0.94037 1.58714 0.90868 1.25014 0.98178 0.96030 0.94523 1.70004 1.29316 1.04123 1.47125 0.86207 0.82567 0.77769 0.78911 1.19897 1.20818 1.19890 1.24028 0.93320 0.92769 1.02073 1.96873 1.29940 1.61453 1.97299 1.77378 0.99739 1.07711 1.24093 0.89492 0.88186 0.88404 0.77907 0.91038 0.91030 0.90413 0.90408 0.91692 0.91692 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.24 11.44 59.85 0.68 0.92 16 2 N -0.35 -2.66 3.98 -67.58 -0.27 -2.93 16 3 C 0.14 1.11 11.33 -16.55 -0.19 0.92 16 4 C -0.25 -2.97 6.13 -105.06 -0.64 -3.61 16 5 C 0.54 7.39 7.95 34.39 0.27 7.67 16 6 O -0.50 -7.93 15.21 -19.29 -0.29 -8.22 16 7 O -0.36 -4.77 10.05 -40.64 -0.41 -5.18 16 8 C 0.08 1.07 5.48 37.15 0.20 1.28 16 9 C -0.10 -1.53 5.60 -26.73 -0.15 -1.68 16 10 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 11 S -0.12 -3.20 21.44 -107.50 -2.30 -5.51 16 12 C -0.52 -14.69 9.50 30.94 0.29 -14.40 16 13 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 14 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 15 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 16 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 C 0.12 1.49 7.75 -16.91 -0.13 1.36 16 21 Br 0.06 0.73 32.51 -68.01 -2.21 -1.48 16 22 N -0.27 -2.89 12.50 32.16 0.40 -2.49 16 23 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.10 0.01 8.14 -51.93 -0.42 -0.42 16 25 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.06 1.26 8.14 -51.91 -0.42 0.84 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -34.50 333.56 -7.66 -42.16 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -3.77 Total: -5.10 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 0.46 Total: -7.65 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.87 Total: -30.41 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.70 Total: -13.41 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.30 Total: -5.51 kcal Atomic # 35 Polarization: 0.73 SS G_CDS: -2.21 Total: -1.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.50 -7.66 -42.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885683295.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.145 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds