Wall clock time and date at job start Wed Apr 1 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34200 * 125.73052 * 2 1 4 4 C 1.38150 * 107.42291 * 179.84900 * 3 2 1 5 5 C 1.47250 * 126.43096 * 180.16298 * 4 3 2 6 6 O 1.21533 * 119.99697 * 180.27478 * 5 4 3 7 7 O 1.34753 * 120.00504 * 0.27549 * 5 4 3 8 8 C 1.45198 * 117.00480 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47229 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 8 7 11 11 S 1.81001 * 109.47321 * 179.97438 * 10 9 8 12 12 C 1.76200 * 100.00055 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99661 * 0.02562 * 12 11 10 14 14 C 1.38800 * 120.00002 * 180.02562 * 12 11 10 15 15 N 1.31630 * 119.99920 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00010 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47128 * 59.99824 * 16 14 12 18 18 H 1.48496 * 109.46766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46932 * 300.00078 * 16 14 12 20 20 C 1.41422 * 107.12956 * 0.41486 * 4 3 2 21 21 Br 1.89100 * 126.00040 * 179.76629 * 20 4 3 22 22 N 1.30494 * 107.98807 * 359.74587 * 20 4 3 23 23 H 1.09001 * 109.47060 * 269.71773 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.71262 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.71344 * 1 2 3 26 26 H 1.08000 * 126.29069 * 0.02562 * 3 2 1 27 27 H 1.09005 * 109.46849 * 300.00564 * 8 7 5 28 28 H 1.08999 * 109.46573 * 59.99563 * 8 7 5 29 29 H 1.08997 * 109.47119 * 299.99689 * 9 8 7 30 30 H 1.08997 * 109.47211 * 60.00133 * 9 8 7 31 31 H 1.08994 * 109.47337 * 300.00323 * 10 9 8 32 32 H 1.09005 * 109.46904 * 60.00237 * 10 9 8 33 33 H 0.96995 * 120.00287 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2488 1.0894 0.0000 4 6 3.5603 0.6554 0.0035 5 6 4.7626 1.5055 0.0081 6 8 5.8664 0.9969 0.0058 7 8 4.6392 2.8474 0.0149 8 6 5.8670 3.6224 0.0197 9 6 5.5283 5.1144 0.0278 10 6 6.8222 5.9310 0.0323 11 16 6.4216 7.6961 0.0410 12 6 8.0460 8.3786 0.0441 13 1 8.9061 7.7254 0.0403 14 6 8.2203 9.7556 0.0514 15 7 7.1720 10.5516 0.0565 16 14 9.9425 10.4791 0.0554 17 1 10.6701 10.0318 -1.1593 18 1 9.8565 11.9615 0.0626 19 1 10.6698 10.0190 1.2656 20 6 3.5313 -0.7585 -0.0042 21 35 5.0380 -1.9011 -0.0099 22 7 2.2821 -1.1359 -0.0062 23 1 -0.3633 -0.0051 1.0277 24 1 -0.3633 0.8926 -0.5094 25 1 -0.3634 -0.8874 -0.5183 26 1 1.9154 2.1167 0.0004 27 1 6.4479 3.3772 0.9089 28 1 6.4491 3.3863 -0.8710 29 1 4.9473 5.3598 -0.8611 30 1 4.9464 5.3500 0.9188 31 1 7.4037 5.6856 0.9208 32 1 7.4037 5.6953 -0.8591 33 1 7.2937 11.5139 0.0620 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885683295.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:53 Heat of formation + Delta-G solvation = -35.319785 kcal Electronic energy + Delta-G solvation = -18780.255548 eV Core-core repulsion = 15400.551577 eV Total energy + Delta-G solvation = -3379.703971 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.66234 -41.00971 -37.64934 -34.86185 -34.82423 -34.55819 -32.26351 -31.77722 -28.38780 -27.84387 -27.23039 -24.32864 -22.69636 -22.23303 -21.40511 -19.57824 -18.84928 -18.12407 -17.70213 -16.87969 -16.86388 -16.80165 -16.07071 -15.79564 -15.63830 -14.95307 -14.46140 -14.20593 -14.14668 -13.80062 -13.77234 -13.50122 -13.09327 -12.92030 -12.62254 -12.42316 -12.36250 -12.31181 -12.17218 -11.98331 -11.51562 -11.43113 -11.12224 -11.05576 -10.56209 -10.33828 -10.02642 -8.65084 -8.36400 -6.12127 -0.04472 0.20197 0.49842 1.25202 1.37004 1.42266 1.48901 1.63110 1.94011 1.96996 2.29324 2.98126 3.18861 3.31670 3.71773 3.92165 3.95564 4.06223 4.06773 4.23752 4.39054 4.39149 4.43458 4.57902 4.70105 4.73336 4.74302 5.08258 5.17493 5.41681 5.46545 5.63175 6.02220 6.19435 6.77416 7.06320 8.72614 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.001993 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.181843 B =14047.129654 C =15276.260198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.340 5.340 3 C 0.165 3.835 4 C -0.289 4.289 5 C 0.537 3.463 6 O -0.526 6.526 7 O -0.349 6.349 8 C 0.084 3.916 9 C -0.084 4.084 10 C -0.093 4.093 11 S -0.182 6.182 12 C -0.541 4.541 13 H 0.073 0.927 14 C 0.017 3.983 15 N -0.906 5.906 16 Si 0.992 3.008 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.265 1.265 20 C 0.109 3.891 21 Br 0.051 6.949 22 N -0.285 5.285 23 H 0.103 0.897 24 H 0.133 0.867 25 H 0.102 0.898 26 H 0.243 0.757 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 -25.504 -0.224 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.118 5.118 3 C 0.011 3.989 4 C -0.304 4.304 5 C 0.382 3.618 6 O -0.416 6.416 7 O -0.265 6.265 8 C 0.008 3.992 9 C -0.122 4.122 10 C -0.242 4.242 11 S 0.047 5.953 12 C -0.689 4.689 13 H 0.091 0.909 14 C -0.188 4.188 15 N -0.542 5.542 16 Si 0.814 3.186 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.190 1.190 20 C -0.137 4.137 21 Br 0.133 6.867 22 N -0.109 5.109 23 H 0.121 0.879 24 H 0.151 0.849 25 H 0.120 0.880 26 H 0.259 0.741 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.712 -26.334 -0.225 31.191 hybrid contribution 2.611 0.780 0.021 2.725 sum -14.102 -25.554 -0.203 29.187 Atomic orbital electron populations 1.22687 0.69194 1.07575 1.06297 1.48911 1.09097 1.02487 1.51333 1.23952 0.88080 0.95847 0.91023 1.19240 0.92798 0.90816 1.27535 1.20073 0.88151 0.81087 0.72499 1.90881 1.28266 1.75014 1.47390 1.86453 1.37765 1.18051 1.84264 1.23014 0.83764 0.89440 1.02960 1.21090 0.96281 0.90179 1.04654 1.23081 1.00436 0.97076 1.03596 1.84554 1.14558 0.99164 1.97051 1.23030 0.92081 0.94826 1.58954 0.90868 1.26030 1.02642 0.96392 0.93775 1.70129 1.31708 1.04517 1.47891 0.85097 0.77099 0.77116 0.79315 1.19022 1.19966 1.19015 1.24072 0.93582 0.92989 1.03044 1.96832 1.30810 1.61742 1.97363 1.77315 0.99634 1.09526 1.24469 0.87861 0.84909 0.87958 0.74121 0.90952 0.90933 0.89962 0.89967 0.91457 0.91453 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.12 11.44 127.77 1.46 1.58 16 2 N -0.34 -4.22 3.98 -367.71 -1.46 -5.69 16 3 C 0.16 2.14 11.33 84.31 0.96 3.10 16 4 C -0.29 -6.38 6.13 -20.15 -0.12 -6.50 16 5 C 0.54 14.36 7.95 70.19 0.56 14.91 16 6 O -0.53 -16.84 15.21 19.73 0.30 -16.54 16 7 O -0.35 -8.77 10.05 -56.64 -0.57 -9.34 16 8 C 0.08 2.25 5.48 71.98 0.39 2.65 16 9 C -0.08 -2.51 5.60 30.59 0.17 -2.34 16 10 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 11 S -0.18 -9.39 21.44 -56.49 -1.21 -10.60 16 12 C -0.54 -30.82 9.50 67.95 0.65 -30.17 16 13 H 0.07 4.02 7.80 -2.91 -0.02 3.99 16 14 C 0.02 0.94 5.49 84.86 0.47 1.41 16 15 N -0.91 -53.91 13.22 21.65 0.29 -53.63 16 16 Si 0.99 43.55 29.55 68.60 2.03 45.57 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 C 0.11 2.56 7.75 85.68 0.66 3.23 16 21 Br 0.05 1.21 32.51 -20.37 -0.66 0.54 16 22 N -0.29 -5.86 12.50 -52.17 -0.65 -6.51 16 23 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.13 -0.60 8.14 -2.38 -0.02 -0.62 16 25 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 26 H 0.24 1.07 8.06 -2.91 -0.02 1.05 16 27 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -75.75 333.56 4.79 -70.96 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: 1.13 Total: 0.54 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 5.60 Total: -15.31 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -1.83 Total: -65.83 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.27 Total: -25.88 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -9.39 SS G_CDS: -1.21 Total: -10.60 kcal Atomic # 35 Polarization: 1.21 SS G_CDS: -0.66 Total: 0.54 kcal Total: -75.75 4.79 -70.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885683295.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.639 kcal (2) G-P(sol) polarization free energy of solvation -75.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds