Wall clock time and date at job start Wed Apr 1 2020 05:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35914 * 116.99617 * 2 1 4 4 C 1.38741 * 120.04902 * 359.72632 * 3 2 1 5 5 C 1.38123 * 119.95291 * 179.72609 * 4 3 2 6 6 C 1.38364 * 120.04718 * 0.54101 * 5 4 3 7 7 Br 1.89103 * 119.95572 * 179.74564 * 6 5 4 8 8 C 1.38323 * 120.08996 * 359.73634 * 6 5 4 9 9 C 1.38169 * 120.04534 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.02193 * 179.97438 * 9 8 6 11 11 S 1.81401 * 109.46864 * 270.02232 * 10 9 8 12 12 O 1.42102 * 108.57943 * 294.48879 * 11 10 9 13 13 O 1.42101 * 108.58122 * 65.51332 * 11 10 9 14 14 C 1.81403 * 101.92035 * 180.02562 * 11 10 9 15 15 C 1.50706 * 109.47020 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00137 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99696 * 179.97438 * 15 14 11 18 18 N 1.31518 * 119.99830 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00071 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46942 * 90.00003 * 19 17 15 21 21 H 1.48506 * 109.46864 * 209.99714 * 19 17 15 22 22 H 1.48495 * 109.47197 * 329.99720 * 19 17 15 23 23 H 1.09001 * 109.47103 * 60.00556 * 1 2 3 24 24 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00116 * 1 2 3 26 26 H 1.07999 * 120.02422 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.97289 * 180.25701 * 5 4 3 28 28 H 1.07999 * 119.97421 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47024 * 30.01597 * 10 9 8 30 30 H 1.08993 * 109.47453 * 150.02350 * 10 9 8 31 31 H 1.09003 * 109.46910 * 299.99810 * 14 11 10 32 32 H 1.09000 * 109.47351 * 59.99949 * 14 11 10 33 33 H 0.96996 * 120.00279 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3752 -0.0057 5 6 1.9203 3.6049 0.0000 6 6 3.3021 3.6763 0.0001 7 35 4.1606 5.3612 0.0007 8 6 4.0564 2.5168 0.0001 9 6 3.4311 1.2847 0.0004 10 6 4.2534 0.0219 -0.0003 11 16 4.5827 -0.4843 -1.7109 12 8 3.3504 -0.8383 -2.3235 13 8 5.4049 0.4994 -2.3238 14 6 5.5634 -1.9918 -1.4734 15 6 5.9359 -2.5655 -2.8163 16 1 5.6152 -2.0723 -3.7220 17 6 6.6871 -3.7194 -2.8885 18 7 7.0126 -4.2198 -4.0604 19 14 7.2424 -4.5720 -1.3220 20 1 6.2162 -5.5617 -0.9067 21 1 8.5310 -5.2683 -1.5676 22 1 7.4217 -3.5638 -0.2466 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2127 2.3200 -0.0106 27 1 1.3331 4.5114 -0.0003 28 1 5.1348 2.5747 0.0006 29 1 5.1977 0.2029 0.5132 30 1 3.7061 -0.7684 0.5134 31 1 6.4692 -1.7520 -0.9164 32 1 4.9772 -2.7227 -0.9164 33 1 7.5407 -5.0318 -4.1113 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266115.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:12 Heat of formation + Delta-G solvation = -80.531155 kcal Electronic energy + Delta-G solvation = -20393.803693 eV Core-core repulsion = 16979.846459 eV Total energy + Delta-G solvation = -3413.957234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.986 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49839 -37.73327 -36.06400 -35.11658 -33.43430 -33.21932 -31.80407 -29.83845 -29.22761 -27.92649 -26.96100 -23.14675 -22.37886 -21.64197 -18.38198 -18.00168 -17.32077 -16.76797 -16.14416 -15.91202 -15.52540 -15.18187 -15.05375 -14.73099 -14.10800 -14.06863 -13.56553 -13.22944 -12.73415 -12.67925 -12.48145 -12.30005 -11.78424 -11.72237 -11.58595 -11.27358 -11.17779 -11.11320 -10.85183 -10.78178 -10.41771 -10.39772 -10.26798 -9.85159 -9.41098 -8.99375 -8.81226 -8.24039 -6.28576 -4.36726 0.56829 0.97300 1.17656 1.50536 3.06491 3.15267 3.21551 3.23958 3.34413 3.68571 4.16092 4.23127 4.42027 4.56948 4.68307 4.82382 4.91942 4.97389 5.01667 5.07525 5.19448 5.34764 5.37770 5.49849 5.70124 5.85144 5.90521 5.99454 6.19767 6.30933 6.35424 7.11047 7.21867 8.05376 8.65848 9.25809 10.82684 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.003550 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.191630 B = 7884.700933 C = 9016.974416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.298 6.298 3 C 0.160 3.840 4 C -0.205 4.205 5 C -0.047 4.047 6 C -0.129 4.129 7 Br -0.050 7.050 8 C -0.038 4.038 9 C -0.105 4.105 10 C -0.583 4.583 11 S 2.411 3.589 12 O -0.937 6.937 13 O -0.944 6.944 14 C -0.457 4.457 15 C -0.528 4.528 16 H 0.088 0.912 17 C 0.087 3.913 18 N -0.881 5.881 19 Si 0.881 3.119 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.263 1.263 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.055 0.945 26 H 0.142 0.858 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.382 15.951 14.132 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.210 6.210 3 C 0.112 3.888 4 C -0.225 4.225 5 C -0.067 4.067 6 C -0.208 4.208 7 Br 0.035 6.965 8 C -0.058 4.058 9 C -0.108 4.108 10 C -0.706 4.706 11 S 2.595 3.405 12 O -0.934 6.934 13 O -0.942 6.942 14 C -0.591 4.591 15 C -0.567 4.567 16 H 0.106 0.894 17 C -0.119 4.119 18 N -0.517 5.517 19 Si 0.707 3.293 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.187 1.187 23 H 0.079 0.921 24 H 0.124 0.876 25 H 0.074 0.926 26 H 0.159 0.841 27 H 0.155 0.845 28 H 0.166 0.834 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.173 16.664 13.279 24.060 hybrid contribution 0.142 -1.171 1.539 1.939 sum -11.032 15.493 14.818 24.110 Atomic orbital electron populations 1.23170 0.77842 1.04695 1.01324 1.86178 1.21823 1.25731 1.87218 1.18937 0.91538 0.85085 0.93216 1.21208 1.00526 0.91408 1.09314 1.20908 0.92340 0.97991 0.95470 1.21536 0.94851 0.91540 1.12903 1.96688 1.79702 1.22179 1.97951 1.20983 1.00841 0.89392 0.94626 1.18315 0.90243 0.93505 1.08723 1.29517 1.08007 1.03694 1.29381 1.08533 0.76812 0.78692 0.76509 1.93499 1.44177 1.84019 1.71702 1.93498 1.69257 1.59529 1.71877 1.28030 1.09376 1.14360 1.07327 1.20108 1.36660 1.11416 0.88477 0.89412 1.24894 0.94395 0.96086 0.96531 1.69866 1.36685 1.21356 1.23785 0.86753 0.78845 0.80165 0.83556 1.19568 1.20587 1.18723 0.92083 0.87625 0.92619 0.84077 0.84474 0.83442 0.84393 0.83963 0.89777 0.90100 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.12 9.54 -19.47 -0.19 -4.30 16 3 C 0.16 2.24 6.66 -39.22 -0.26 1.98 16 4 C -0.21 -2.30 9.04 -39.44 -0.36 -2.66 16 5 C -0.05 -0.51 9.78 -39.58 -0.39 -0.90 16 6 C -0.13 -1.62 6.22 -39.50 -0.25 -1.87 16 7 Br -0.05 -0.56 33.70 -68.01 -2.29 -2.85 16 8 C -0.04 -0.53 9.44 -39.58 -0.37 -0.90 16 9 C -0.11 -1.58 5.15 -104.48 -0.54 -2.12 16 10 C -0.58 -8.63 5.71 36.00 0.21 -8.42 16 11 S 2.41 49.56 4.62 -107.50 -0.50 49.06 16 12 O -0.94 -21.83 18.10 -57.83 -1.05 -22.87 16 13 O -0.94 -21.92 18.10 -57.83 -1.05 -22.97 16 14 C -0.46 -10.17 4.63 36.01 0.17 -10.00 16 15 C -0.53 -14.94 9.68 -34.44 -0.33 -15.27 16 16 H 0.09 2.71 7.96 -52.49 -0.42 2.30 16 17 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 18 N -0.88 -26.37 13.96 55.43 0.77 -25.60 16 19 Si 0.88 20.30 27.47 -169.99 -4.67 15.63 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 23 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 24 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 26 H 0.14 1.13 6.30 -52.49 -0.33 0.80 16 27 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 28 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.14 1.60 8.09 -51.92 -0.42 1.18 16 30 H 0.14 1.83 7.53 -51.93 -0.39 1.44 16 31 H 0.08 1.68 7.20 -51.92 -0.37 1.31 16 32 H 0.08 1.61 7.57 -51.92 -0.39 1.21 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -35.57 320.36 -8.92 -44.49 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -3.56 Total: 1.17 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: -1.23 Total: -36.58 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.77 Total: -25.60 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -2.28 Total: -50.15 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Atomic # 16 Polarization: 49.56 SS G_CDS: -0.50 Total: 49.06 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.57 -8.92 -44.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266115.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.039 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds