Wall clock time and date at job start Wed Apr 1 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35914 * 116.99617 * 2 1 4 4 C 1.38741 * 120.04902 * 359.72632 * 3 2 1 5 5 C 1.38123 * 119.95291 * 179.72609 * 4 3 2 6 6 C 1.38364 * 120.04718 * 0.54101 * 5 4 3 7 7 Br 1.89103 * 119.95572 * 179.74564 * 6 5 4 8 8 C 1.38323 * 120.08996 * 359.73634 * 6 5 4 9 9 C 1.38169 * 120.04534 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.02193 * 179.97438 * 9 8 6 11 11 S 1.81401 * 109.46864 * 270.02232 * 10 9 8 12 12 O 1.42102 * 108.57943 * 294.48879 * 11 10 9 13 13 O 1.42101 * 108.58122 * 65.51332 * 11 10 9 14 14 C 1.81403 * 101.92035 * 180.02562 * 11 10 9 15 15 C 1.50706 * 109.47020 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00137 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99696 * 179.97438 * 15 14 11 18 18 N 1.31518 * 119.99830 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00071 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46942 * 90.00003 * 19 17 15 21 21 H 1.48506 * 109.46864 * 209.99714 * 19 17 15 22 22 H 1.48495 * 109.47197 * 329.99720 * 19 17 15 23 23 H 1.09001 * 109.47103 * 60.00556 * 1 2 3 24 24 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00116 * 1 2 3 26 26 H 1.07999 * 120.02422 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.97289 * 180.25701 * 5 4 3 28 28 H 1.07999 * 119.97421 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47024 * 30.01597 * 10 9 8 30 30 H 1.08993 * 109.47453 * 150.02350 * 10 9 8 31 31 H 1.09003 * 109.46910 * 299.99810 * 14 11 10 32 32 H 1.09000 * 109.47351 * 59.99949 * 14 11 10 33 33 H 0.96996 * 120.00279 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3752 -0.0057 5 6 1.9203 3.6049 0.0000 6 6 3.3021 3.6763 0.0001 7 35 4.1606 5.3612 0.0007 8 6 4.0564 2.5168 0.0001 9 6 3.4311 1.2847 0.0004 10 6 4.2534 0.0219 -0.0003 11 16 4.5827 -0.4843 -1.7109 12 8 3.3504 -0.8383 -2.3235 13 8 5.4049 0.4994 -2.3238 14 6 5.5634 -1.9918 -1.4734 15 6 5.9359 -2.5655 -2.8163 16 1 5.6152 -2.0723 -3.7220 17 6 6.6871 -3.7194 -2.8885 18 7 7.0126 -4.2198 -4.0604 19 14 7.2424 -4.5720 -1.3220 20 1 6.2162 -5.5617 -0.9067 21 1 8.5310 -5.2683 -1.5676 22 1 7.4217 -3.5638 -0.2466 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2127 2.3200 -0.0106 27 1 1.3331 4.5114 -0.0003 28 1 5.1348 2.5747 0.0006 29 1 5.1977 0.2029 0.5132 30 1 3.7061 -0.7684 0.5134 31 1 6.4692 -1.7520 -0.9164 32 1 4.9772 -2.7227 -0.9164 33 1 7.5407 -5.0318 -4.1113 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266115.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:11 Heat of formation + Delta-G solvation = -107.288877 kcal Electronic energy + Delta-G solvation = -20394.963995 eV Core-core repulsion = 16979.846459 eV Total energy + Delta-G solvation = -3415.117536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.986 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.41694 -38.64373 -37.76364 -36.80781 -35.29109 -34.45034 -32.70154 -31.77587 -30.14530 -28.89373 -27.83807 -25.06736 -23.33030 -22.68459 -19.74289 -19.41811 -19.05054 -17.74794 -17.58091 -17.21165 -16.75490 -16.62506 -16.39310 -15.88601 -15.62032 -14.97177 -14.70449 -14.52743 -14.23123 -14.16181 -13.76775 -13.48765 -13.07925 -12.93706 -12.85169 -12.63952 -12.60216 -12.56823 -12.27768 -12.16502 -11.91270 -11.81437 -11.31274 -11.29594 -11.10520 -10.90270 -10.03784 -9.20301 -8.41401 -6.57664 -0.89943 0.02941 0.14027 0.59574 1.35548 1.39697 1.50714 2.14352 2.23653 2.30924 2.39805 2.87500 2.89514 3.25589 3.36997 3.64371 3.87941 3.99031 4.13268 4.23568 4.37346 4.42701 4.44101 4.55181 4.61600 4.73271 4.75752 4.88560 5.02175 5.06117 5.27359 5.44146 5.86108 6.24735 6.47466 7.09486 8.74614 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.003550 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.191630 B = 7884.700933 C = 9016.974416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.323 6.323 3 C 0.148 3.852 4 C -0.202 4.202 5 C -0.038 4.038 6 C -0.144 4.144 7 Br -0.041 7.041 8 C -0.049 4.049 9 C -0.141 4.141 10 C -0.542 4.542 11 S 2.403 3.597 12 O -0.980 6.980 13 O -0.987 6.987 14 C -0.474 4.474 15 C -0.553 4.553 16 H 0.031 0.969 17 C 0.018 3.982 18 N -0.939 5.939 19 Si 0.954 3.046 20 H -0.255 1.255 21 H -0.279 1.279 22 H -0.223 1.223 23 H 0.065 0.935 24 H 0.116 0.884 25 H 0.084 0.916 26 H 0.175 0.825 27 H 0.168 0.832 28 H 0.151 0.849 29 H 0.176 0.824 30 H 0.168 0.832 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.504 16.786 18.036 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.235 6.235 3 C 0.100 3.900 4 C -0.221 4.221 5 C -0.058 4.058 6 C -0.223 4.223 7 Br 0.044 6.956 8 C -0.070 4.070 9 C -0.144 4.144 10 C -0.672 4.672 11 S 2.593 3.407 12 O -0.977 6.977 13 O -0.984 6.984 14 C -0.606 4.606 15 C -0.591 4.591 16 H 0.049 0.951 17 C -0.182 4.182 18 N -0.576 5.576 19 Si 0.773 3.227 20 H -0.180 1.180 21 H -0.204 1.204 22 H -0.145 1.145 23 H 0.084 0.916 24 H 0.135 0.865 25 H 0.103 0.897 26 H 0.192 0.808 27 H 0.185 0.815 28 H 0.169 0.831 29 H 0.194 0.806 30 H 0.186 0.814 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.287 17.478 17.112 27.373 hybrid contribution 0.338 -1.262 0.308 1.343 sum -11.948 16.216 17.420 26.630 Atomic orbital electron populations 1.23516 0.75712 1.06113 1.02949 1.86132 1.24199 1.26028 1.87154 1.19213 0.91616 0.86096 0.93088 1.21601 1.02131 0.90497 1.07886 1.21327 0.91935 0.99183 0.93320 1.21754 0.95748 0.91663 1.13143 1.96694 1.79778 1.21205 1.97937 1.21155 1.01339 0.89799 0.94732 1.18458 0.91076 0.93492 1.11344 1.29066 1.10688 1.04796 1.22614 1.08321 0.75459 0.77581 0.79301 1.93436 1.44918 1.84361 1.74966 1.93436 1.70041 1.59837 1.75111 1.28092 1.11715 1.16439 1.04376 1.20392 1.37027 1.11916 0.89798 0.95091 1.26143 0.94166 0.96826 1.01109 1.70042 1.38115 1.22353 1.27124 0.85616 0.78458 0.79675 0.78924 1.17960 1.20422 1.14547 0.91609 0.86547 0.89743 0.80821 0.81486 0.83135 0.80586 0.81398 0.86784 0.87071 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -8.21 9.54 -92.58 -0.88 -9.10 16 3 C 0.15 3.80 6.66 22.50 0.15 3.95 16 4 C -0.20 -3.88 9.04 22.36 0.20 -3.68 16 5 C -0.04 -0.70 9.78 22.27 0.22 -0.49 16 6 C -0.14 -3.30 6.22 22.32 0.14 -3.16 16 7 Br -0.04 -0.85 33.70 -20.37 -0.69 -1.53 16 8 C -0.05 -1.30 9.44 22.27 0.21 -1.09 16 9 C -0.14 -3.93 5.15 -19.77 -0.10 -4.03 16 10 C -0.54 -14.62 5.71 71.23 0.41 -14.21 16 11 S 2.40 99.50 4.62 -56.49 -0.26 99.24 16 12 O -0.98 -47.20 18.10 -127.37 -2.30 -49.50 16 13 O -0.99 -47.43 18.10 -127.37 -2.31 -49.74 16 14 C -0.47 -20.72 4.63 71.24 0.33 -20.39 16 15 C -0.55 -32.59 9.68 25.60 0.25 -32.34 16 16 H 0.03 2.09 7.96 -2.91 -0.02 2.06 16 17 C 0.02 1.04 5.47 84.65 0.46 1.50 16 18 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 19 Si 0.95 40.79 27.47 68.60 1.88 42.68 16 20 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.22 -8.07 6.54 99.48 0.65 -7.42 16 23 H 0.07 0.93 7.65 -2.39 -0.02 0.91 16 24 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.08 0.79 7.67 -2.39 -0.02 0.77 16 26 H 0.17 2.05 6.30 -2.91 -0.02 2.04 16 27 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 28 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.18 3.37 8.09 -2.39 -0.02 3.35 16 30 H 0.17 3.71 7.53 -2.39 -0.02 3.69 16 31 H 0.11 4.26 7.20 -2.39 -0.02 4.24 16 32 H 0.11 4.15 7.57 -2.39 -0.02 4.13 16 33 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -84.01 320.36 0.20 -83.81 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.08 Total: 15.31 kcal Atomic # 6 Polarization: -76.03 SS G_CDS: 3.38 Total: -72.65 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.30 Total: -58.51 kcal Atomic # 8 Polarization: -102.84 SS G_CDS: -5.49 Total: -108.34 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.68 kcal Atomic # 16 Polarization: 99.50 SS G_CDS: -0.26 Total: 99.24 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -0.69 Total: -1.53 kcal Total: -84.01 0.20 -83.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266115.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.479 kcal (2) G-P(sol) polarization free energy of solvation -84.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds