Wall clock time and date at job start Wed Apr 1 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00302 * 2 1 4 4 H 1.48498 * 109.47327 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47022 * 300.00103 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99863 * 3 2 1 7 7 C 1.37881 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00098 * 359.97438 * 7 2 1 10 10 S 1.81404 * 109.47328 * 179.97438 * 9 7 2 11 11 O 1.42099 * 108.57393 * 65.51320 * 10 9 7 12 12 O 1.42097 * 108.57846 * 294.49201 * 10 9 7 13 13 C 1.81397 * 101.92312 * 180.02562 * 10 9 7 14 14 C 1.50697 * 109.47167 * 180.02562 * 13 10 9 15 15 C 1.35126 * 125.69379 * 89.99777 * 14 13 10 16 16 N 1.36818 * 107.18187 * 179.97438 * 15 14 13 17 17 C 1.36577 * 132.54856 * 180.02562 * 16 15 14 18 18 C 1.35034 * 120.61131 * 179.97438 * 17 16 15 19 19 Cl 1.73605 * 119.85573 * 179.72828 * 18 17 16 20 20 C 1.40552 * 120.28775 * 0.02562 * 18 17 16 21 21 C 1.36103 * 119.67395 * 0.03475 * 20 18 17 22 22 Cl 1.73603 * 120.33266 * 180.02562 * 21 20 18 23 23 C 1.37031 * 107.00635 * 0.02562 * 16 15 14 24 24 N 1.32574 * 108.04292 * 359.97438 * 23 16 15 25 25 H 0.97002 * 119.99933 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46627 * 60.00268 * 9 7 2 27 27 H 1.08987 * 109.47445 * 300.00392 * 9 7 2 28 28 H 1.09001 * 109.47068 * 60.00228 * 13 10 9 29 29 H 1.09000 * 109.46935 * 299.99909 * 13 10 9 30 30 H 1.08000 * 126.41140 * 359.95701 * 15 14 13 31 31 H 1.08000 * 119.69466 * 359.95749 * 17 16 15 32 32 H 1.07995 * 120.16251 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 16 2.4297 -3.8781 -0.0021 11 8 3.1491 -3.8599 1.2232 12 8 3.1473 -3.8588 -1.2283 13 6 1.3241 -5.3162 -0.0026 14 6 2.1444 -6.5804 -0.0033 15 6 2.5736 -7.2422 1.0938 16 7 3.2792 -8.3307 0.6588 17 6 3.9293 -9.3341 1.3192 18 6 4.5620 -10.3109 0.6344 19 17 5.3882 -11.5729 1.4937 20 6 4.5599 -10.3068 -0.7712 21 6 3.9167 -9.3118 -1.4411 22 17 3.9027 -9.2904 -3.1770 23 6 3.2597 -8.2998 -0.7110 24 7 2.5680 -7.2334 -1.0878 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8895 28 1 0.6949 -5.2904 -0.8924 29 1 0.6957 -5.2917 0.8876 30 1 2.3936 -6.9640 2.1217 31 1 3.9376 -9.3462 2.3991 32 1 5.0669 -11.0888 -1.3168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:49 Heat of formation + Delta-G solvation = 8.181309 kcal Electronic energy + Delta-G solvation = -22615.786690 eV Core-core repulsion = 18757.272824 eV Total energy + Delta-G solvation = -3858.513866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 347.989 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.26606 -38.48233 -37.23853 -36.66322 -36.01177 -35.05864 -33.85616 -33.35182 -32.05094 -29.56059 -29.10523 -27.88174 -23.99900 -23.46909 -23.30511 -21.17685 -18.61062 -18.05304 -17.67727 -16.97894 -16.66696 -16.50718 -15.72299 -15.67641 -15.12094 -15.07869 -14.82869 -14.27259 -13.80767 -13.59977 -13.36929 -12.92737 -12.86755 -12.55850 -12.50401 -12.13881 -11.74089 -11.72962 -11.38548 -11.33639 -11.13022 -11.06797 -10.92170 -10.69467 -10.62602 -10.46367 -10.36402 -9.78757 -9.24397 -8.77132 -8.71654 -8.27134 -6.33604 -4.42755 -0.00947 0.62295 0.87116 1.00206 1.70232 2.33649 2.40746 2.93575 3.21258 3.28413 3.36157 3.52491 3.77364 3.97970 4.05054 4.23065 4.33401 4.47742 4.71428 4.80592 4.89317 5.03364 5.08572 5.20689 5.24485 5.49008 5.61233 5.74041 6.19403 6.48341 6.62676 6.68355 7.46250 7.48333 7.74412 8.59345 9.24353 10.78346 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.021371 B = 0.002558 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.891514 B =10943.807404 C =11598.003244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.528 4.528 8 H 0.073 0.927 9 C -0.401 4.401 10 S 2.392 3.608 11 O -0.954 6.954 12 O -0.942 6.942 13 C -0.553 4.553 14 C 0.077 3.923 15 C -0.057 4.057 16 N -0.355 5.355 17 C 0.083 3.917 18 C -0.059 4.059 19 Cl -0.026 7.026 20 C -0.092 4.092 21 C 0.021 3.979 22 Cl -0.009 7.009 23 C 0.216 3.784 24 N -0.444 5.444 25 H 0.268 0.732 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.201 0.799 31 H 0.181 0.819 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 -23.765 2.842 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.567 4.567 8 H 0.091 0.909 9 C -0.536 4.536 10 S 2.575 3.425 11 O -0.951 6.951 12 O -0.939 6.939 13 C -0.676 4.676 14 C -0.055 4.055 15 C -0.188 4.188 16 N -0.029 5.029 17 C -0.041 4.041 18 C -0.089 4.089 19 Cl 0.003 6.997 20 C -0.117 4.117 21 C -0.009 4.009 22 Cl 0.020 6.980 23 C -0.029 4.029 24 N -0.163 5.163 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.218 0.782 31 H 0.198 0.802 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.608 -23.552 1.993 24.292 hybrid contribution -0.409 0.365 0.811 0.978 sum 5.199 -23.187 2.804 23.927 Atomic orbital electron populations 1.69952 1.06230 1.27638 1.47966 1.24930 0.95041 0.99585 0.93571 0.86293 0.80457 0.82045 0.78033 1.18945 1.20326 1.20356 1.20398 0.93017 0.88348 1.54962 0.90912 1.27525 1.09700 1.09481 1.06864 1.09219 0.79840 0.78103 0.75288 1.93464 1.69713 1.85933 1.45970 1.93505 1.69527 1.85510 1.45380 1.29186 1.14524 1.11482 1.12408 1.19775 1.00323 0.97097 0.88309 1.22716 1.04478 0.89806 1.01841 1.42586 1.34401 1.17832 1.08044 1.21411 0.95668 0.87614 0.99402 1.19746 1.02888 0.94315 0.91988 1.98411 1.76384 1.48920 1.76031 1.20784 1.00116 0.98947 0.91807 1.19359 1.00212 0.94081 0.87279 1.98425 1.96938 1.97930 1.04680 1.20326 1.04107 0.98019 0.80431 1.70744 1.13171 1.03653 1.28740 0.92240 0.89414 0.89531 0.83392 0.83722 0.78168 0.80196 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.55 13.29 55.43 0.74 -23.81 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.50 9.13 -34.44 -0.31 -14.81 16 8 H 0.07 2.00 7.71 -52.49 -0.40 1.60 16 9 C -0.40 -9.30 5.56 36.01 0.20 -9.10 16 10 S 2.39 49.62 4.62 -107.50 -0.50 49.13 16 11 O -0.95 -21.57 18.10 -57.83 -1.05 -22.62 16 12 O -0.94 -22.96 18.10 -57.83 -1.05 -24.01 16 13 C -0.55 -8.46 6.34 36.00 0.23 -8.23 16 14 C 0.08 1.26 6.32 -82.98 -0.52 0.73 16 15 C -0.06 -0.75 11.66 -16.43 -0.19 -0.94 16 16 N -0.36 -4.45 2.95 -62.59 -0.18 -4.63 16 17 C 0.08 0.73 10.70 -16.58 -0.18 0.55 16 18 C -0.06 -0.48 6.28 -39.85 -0.25 -0.73 16 19 Cl -0.03 -0.17 28.94 -51.86 -1.50 -1.67 16 20 C -0.09 -0.81 9.64 -39.48 -0.38 -1.19 16 21 C 0.02 0.25 6.34 -39.29 -0.25 0.00 16 22 Cl -0.01 -0.11 28.98 -51.86 -1.50 -1.61 16 23 C 0.22 3.19 7.63 -156.04 -1.19 2.00 16 24 N -0.44 -7.80 11.32 -8.99 -0.10 -7.90 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.09 1.99 8.14 -51.92 -0.42 1.57 16 27 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 28 H 0.15 2.05 8.14 -51.92 -0.42 1.63 16 29 H 0.14 1.64 8.14 -51.92 -0.42 1.22 16 30 H 0.20 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -36.05 334.96 -10.56 -46.61 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.50 Total: -0.71 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -2.95 Total: -29.79 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.45 Total: -36.34 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -2.09 Total: -46.62 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 49.62 SS G_CDS: -0.50 Total: 49.13 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -3.00 Total: -3.28 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.05 -10.56 -46.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.796 kcal (2) G-P(sol) polarization free energy of solvation -36.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds