Wall clock time and date at job start Wed Apr 1 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00302 * 2 1 4 4 H 1.48498 * 109.47327 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47022 * 300.00103 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99863 * 3 2 1 7 7 C 1.37881 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00025 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00098 * 359.97438 * 7 2 1 10 10 S 1.81404 * 109.47328 * 179.97438 * 9 7 2 11 11 O 1.42099 * 108.57393 * 65.51320 * 10 9 7 12 12 O 1.42097 * 108.57846 * 294.49201 * 10 9 7 13 13 C 1.81397 * 101.92312 * 180.02562 * 10 9 7 14 14 C 1.50697 * 109.47167 * 180.02562 * 13 10 9 15 15 C 1.35126 * 125.69379 * 89.99777 * 14 13 10 16 16 N 1.36818 * 107.18187 * 179.97438 * 15 14 13 17 17 C 1.36577 * 132.54856 * 180.02562 * 16 15 14 18 18 C 1.35034 * 120.61131 * 179.97438 * 17 16 15 19 19 Cl 1.73605 * 119.85573 * 179.72828 * 18 17 16 20 20 C 1.40552 * 120.28775 * 0.02562 * 18 17 16 21 21 C 1.36103 * 119.67395 * 0.03475 * 20 18 17 22 22 Cl 1.73603 * 120.33266 * 180.02562 * 21 20 18 23 23 C 1.37031 * 107.00635 * 0.02562 * 16 15 14 24 24 N 1.32574 * 108.04292 * 359.97438 * 23 16 15 25 25 H 0.97002 * 119.99933 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46627 * 60.00268 * 9 7 2 27 27 H 1.08987 * 109.47445 * 300.00392 * 9 7 2 28 28 H 1.09001 * 109.47068 * 60.00228 * 13 10 9 29 29 H 1.09000 * 109.46935 * 299.99909 * 13 10 9 30 30 H 1.08000 * 126.41140 * 359.95701 * 15 14 13 31 31 H 1.08000 * 119.69466 * 359.95749 * 17 16 15 32 32 H 1.07995 * 120.16251 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 16 2.4297 -3.8781 -0.0021 11 8 3.1491 -3.8599 1.2232 12 8 3.1473 -3.8588 -1.2283 13 6 1.3241 -5.3162 -0.0026 14 6 2.1444 -6.5804 -0.0033 15 6 2.5736 -7.2422 1.0938 16 7 3.2792 -8.3307 0.6588 17 6 3.9293 -9.3341 1.3192 18 6 4.5620 -10.3109 0.6344 19 17 5.3882 -11.5729 1.4937 20 6 4.5599 -10.3068 -0.7712 21 6 3.9167 -9.3118 -1.4411 22 17 3.9027 -9.2904 -3.1770 23 6 3.2597 -8.2998 -0.7110 24 7 2.5680 -7.2334 -1.0878 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8895 28 1 0.6949 -5.2904 -0.8924 29 1 0.6957 -5.2917 0.8876 30 1 2.3936 -6.9640 2.1217 31 1 3.9376 -9.3462 2.3991 32 1 5.0669 -11.0888 -1.3168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:49 Heat of formation + Delta-G solvation = -16.571190 kcal Electronic energy + Delta-G solvation = -22616.860039 eV Core-core repulsion = 18757.272824 eV Total energy + Delta-G solvation = -3859.587215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 347.989 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.21040 -39.28566 -38.00583 -37.76470 -37.41813 -36.80986 -35.37374 -34.74635 -33.12239 -31.04162 -30.42686 -28.94379 -25.58237 -24.66804 -24.22317 -22.26677 -19.74736 -19.41870 -18.91599 -18.49017 -17.80800 -17.52352 -17.21269 -16.84640 -16.72534 -16.38462 -16.02876 -15.67014 -14.73280 -14.66651 -14.42942 -14.24050 -14.00191 -13.76070 -13.70146 -13.58666 -13.36549 -12.92379 -12.85066 -12.74426 -12.71914 -12.51857 -12.37474 -12.13674 -11.89093 -11.71682 -11.45564 -11.44154 -10.96688 -10.75595 -9.83949 -9.15562 -8.39361 -6.54781 -0.94029 -0.63056 -0.18942 0.26252 0.93816 1.37851 1.39010 1.45129 1.49987 1.53040 1.97669 2.16740 2.32177 2.58871 2.93612 2.94976 3.18256 3.30120 3.39350 3.52637 3.73803 3.99284 4.08991 4.26517 4.40585 4.47780 4.54706 4.80931 4.81954 4.92121 5.13969 5.39061 5.61227 5.77345 6.44924 6.54596 7.15338 8.73285 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.021371 B = 0.002558 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.891514 B =10943.807404 C =11598.003244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.561 4.561 8 H 0.058 0.942 9 C -0.420 4.420 10 S 2.407 3.593 11 O -0.979 6.979 12 O -0.990 6.990 13 C -0.517 4.517 14 C 0.032 3.968 15 C -0.043 4.043 16 N -0.358 5.358 17 C 0.085 3.915 18 C -0.059 4.059 19 Cl -0.002 7.002 20 C -0.062 4.062 21 C -0.013 4.013 22 Cl -0.019 7.019 23 C 0.202 3.798 24 N -0.494 5.494 25 H 0.274 0.726 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.162 0.838 29 H 0.191 0.809 30 H 0.238 0.762 31 H 0.219 0.781 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.407 -26.023 4.658 26.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.600 4.600 8 H 0.076 0.924 9 C -0.553 4.553 10 S 2.597 3.403 11 O -0.976 6.976 12 O -0.988 6.988 13 C -0.647 4.647 14 C -0.100 4.100 15 C -0.176 4.176 16 N -0.030 5.030 17 C -0.037 4.037 18 C -0.089 4.089 19 Cl 0.027 6.973 20 C -0.086 4.086 21 C -0.043 4.043 22 Cl 0.010 6.990 23 C -0.043 4.043 24 N -0.215 5.215 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.180 0.820 29 H 0.208 0.792 30 H 0.254 0.746 31 H 0.235 0.765 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 6.073 -25.733 3.815 26.714 hybrid contribution -0.475 0.739 0.316 0.934 sum 5.598 -24.994 4.131 25.944 Atomic orbital electron populations 1.70004 1.07214 1.28746 1.48473 1.25754 0.95991 1.02811 0.93135 0.85473 0.79004 0.78392 0.78886 1.19243 1.19273 1.18812 1.20769 0.92890 0.90901 1.55430 0.92419 1.27594 1.10505 1.10214 1.07010 1.08280 0.79549 0.78723 0.73791 1.93415 1.70893 1.86903 1.46376 1.93440 1.71383 1.86812 1.47116 1.28735 1.12899 1.07462 1.15556 1.19936 1.02604 0.98054 0.89396 1.23230 1.02783 0.89047 1.02544 1.42739 1.34441 1.18381 1.07464 1.22108 0.94191 0.86289 1.01109 1.19876 1.02497 0.94689 0.91862 1.98434 1.75765 1.47714 1.75427 1.21181 0.97311 0.97771 0.92357 1.19496 1.02541 0.95154 0.87092 1.98412 1.97139 1.98018 1.05403 1.20652 1.03950 0.97919 0.81828 1.70620 1.15160 1.05440 1.30240 0.91700 0.89643 0.88629 0.82047 0.79179 0.74588 0.76455 0.79219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.12 13.29 21.45 0.28 -50.83 16 2 C 0.03 1.44 5.46 84.66 0.46 1.91 16 3 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.56 -31.81 9.13 25.60 0.23 -31.58 16 8 H 0.06 3.33 7.71 -2.91 -0.02 3.30 16 9 C -0.42 -20.05 5.56 71.24 0.40 -19.65 16 10 S 2.41 101.65 4.62 -56.49 -0.26 101.39 16 11 O -0.98 -44.65 18.10 -127.37 -2.31 -46.96 16 12 O -0.99 -50.35 18.10 -127.37 -2.30 -52.65 16 13 C -0.52 -15.17 6.34 71.23 0.45 -14.72 16 14 C 0.03 0.99 6.32 41.59 0.26 1.25 16 15 C -0.04 -1.04 11.66 83.20 0.97 -0.07 16 16 N -0.36 -8.10 2.95 -351.95 -1.04 -9.13 16 17 C 0.09 1.20 10.70 83.22 0.89 2.09 16 18 C -0.06 -0.76 6.28 22.10 0.14 -0.62 16 19 Cl 0.00 -0.02 28.94 -2.72 -0.08 -0.10 16 20 C -0.06 -0.93 9.64 22.34 0.22 -0.71 16 21 C -0.01 -0.30 6.34 22.46 0.14 -0.16 16 22 Cl -0.02 -0.44 28.98 -2.72 -0.08 -0.52 16 23 C 0.20 5.81 7.63 134.14 1.02 6.83 16 24 N -0.49 -17.37 11.32 -182.35 -2.06 -19.44 16 25 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 26 H 0.09 4.02 8.14 -2.39 -0.02 4.00 16 27 H 0.10 4.28 8.14 -2.40 -0.02 4.26 16 28 H 0.16 4.33 8.14 -2.39 -0.02 4.32 16 29 H 0.19 3.72 8.14 -2.39 -0.02 3.70 16 30 H 0.24 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.22 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.19 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -82.05 334.96 0.55 -81.50 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.18 Total: 6.82 kcal Atomic # 6 Polarization: -60.62 SS G_CDS: 5.19 Total: -55.43 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.82 Total: -79.40 kcal Atomic # 8 Polarization: -95.00 SS G_CDS: -4.61 Total: -99.61 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 101.65 SS G_CDS: -0.26 Total: 101.39 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.16 Total: -0.62 kcal Total: -82.05 0.55 -81.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.931 kcal (2) G-P(sol) polarization free energy of solvation -82.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds