Wall clock time and date at job start Wed Apr 1 2020 05:39:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47205 * 179.97438 * 2 1
4 4 N 1.46508 * 109.46583 * 145.20807 * 3 2 1
5 5 C 1.36873 * 120.00066 * 96.71941 * 4 3 2
6 6 H 1.07995 * 120.00056 * 157.96797 * 5 4 3
7 7 C 1.39051 * 119.99818 * 337.96628 * 5 4 3
8 8 N 1.31364 * 119.99981 * 355.98854 * 7 5 4
9 9 Si 1.86800 * 119.99901 * 175.98848 * 7 5 4
10 10 H 1.48503 * 109.46737 * 359.97438 * 9 7 5
11 11 H 1.48493 * 109.47110 * 119.99929 * 9 7 5
12 12 H 1.48502 * 109.47007 * 240.00425 * 9 7 5
13 13 C 1.34777 * 119.99597 * 276.71425 * 4 3 2
14 14 O 1.21594 * 119.99425 * 184.80096 * 13 4 3
15 15 C 1.47725 * 120.00319 * 4.80443 * 13 4 3
16 16 C 1.40080 * 120.55862 * 296.26421 * 15 13 4
17 17 C 1.38421 * 118.27131 * 180.26825 * 16 15 13
18 18 Br 1.89095 * 120.35329 * 179.72593 * 17 16 15
19 19 C 1.38464 * 119.29081 * 359.74859 * 17 16 15
20 20 N 1.31920 * 121.07967 * 0.02562 * 19 17 16
21 21 C 1.31681 * 121.89787 * 359.97438 * 20 19 17
22 22 C 1.50698 * 119.70911 * 179.97438 * 21 20 19
23 23 C 1.53000 * 117.50209 * 2.97550 * 22 21 20
24 24 C 1.52996 * 117.50432 * 294.31283 * 22 21 20
25 25 H 4.40641 * 5.51293 * 180.02562 * 4 1 2
26 26 H 1.09001 * 109.47516 * 25.20668 * 3 2 1
27 27 H 1.08998 * 109.47252 * 265.20389 * 3 2 1
28 28 H 0.97001 * 119.99532 * 180.02562 * 8 7 5
29 29 H 1.08004 * 120.86453 * 0.03770 * 16 15 13
30 30 H 1.08000 * 119.45840 * 180.02562 * 19 17 16
31 31 H 1.09006 * 115.54975 * 148.63750 * 22 21 20
32 32 H 1.09005 * 117.49706 * 359.97438 * 23 22 21
33 33 H 1.08996 * 117.50187 * 145.01285 * 23 22 21
34 34 H 1.08997 * 117.50035 * 214.98241 * 24 22 21
35 35 H 1.09002 * 117.49609 * 359.97438 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1338 1.1353 -0.7882
5 6 3.4921 2.2991 -0.1632
6 1 4.1642 2.9893 -0.6513
7 6 2.9906 2.5928 1.1000
8 7 2.1123 1.7926 1.6603
9 14 3.5659 4.1251 2.0002
10 1 4.5508 4.8524 1.1598
11 1 2.4016 5.0054 2.2730
12 1 4.2033 3.7352 3.2836
13 6 3.2297 1.0329 -2.1286
14 8 3.7157 1.9413 -2.7744
15 6 2.7443 -0.1828 -2.8133
16 6 3.3435 -1.4251 -2.5688
17 6 2.8545 -2.5323 -3.2404
18 35 3.6246 -4.2366 -2.9608
19 6 1.7958 -2.3785 -4.1195
20 7 1.2485 -1.1961 -4.3261
21 6 1.6779 -0.1136 -3.7115
22 6 1.0165 1.2125 -3.9850
23 6 -0.1872 1.2203 -4.9293
24 6 1.1540 1.7934 -5.3937
25 1 -1.0501 -0.0003 0.0004
26 1 3.0099 -0.9290 -0.4377
27 1 3.0093 0.0867 1.0240
28 1 1.7622 1.9978 2.5414
29 1 4.1680 -1.5161 -1.8772
30 1 1.4119 -3.2407 -4.6446
31 1 1.0058 1.9136 -3.1504
32 1 -0.5006 0.2661 -5.3532
33 1 -0.9896 1.9265 -4.7162
34 1 1.2335 2.8766 -5.4859
35 1 1.7233 1.2166 -6.1226
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000935813345.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:39:26
Heat of formation + Delta-G solvation = 105.422637 kcal
Electronic energy + Delta-G solvation = -22452.410389 eV
Core-core repulsion = 19079.198611 eV
Total energy + Delta-G solvation = -3373.211778 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 348.021 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.51745 -38.33500 -36.68018 -35.27860 -32.92809 -32.37988 -31.62031 -31.17223
-29.37209 -26.64012 -25.40468 -24.29390 -23.45682 -22.03764 -20.67299 -19.66476
-18.00006 -17.15516 -16.82926 -16.44605 -16.02332 -15.23550 -14.89396 -14.38795
-14.05401 -13.87761 -13.77972 -13.39352 -13.14272 -12.51615 -12.35602 -12.25686
-11.52771 -11.50799 -11.38855 -11.20579 -11.16330 -10.64165 -10.49889 -10.44001
-10.27241 -10.15778 -9.63809 -9.54370 -9.50313 -9.34418 -8.91079 -8.63268
-8.43811 -8.00348 -6.44428 -4.06731 0.93297 1.20729 1.53258 3.04783
3.17534 3.23299 3.44712 3.59811 3.85738 4.00262 4.08177 4.21834
4.35881 4.60283 4.76021 4.82996 4.94235 5.18837 5.20702 5.35774
5.39426 5.41603 5.61861 5.77304 5.87887 5.91851 6.09122 6.20106
6.25296 6.41313 6.48802 6.61192 6.79294 7.00831 7.39665 7.85780
7.98599 8.26252 8.75056 8.94203 9.14995 9.68958 10.52826
Molecular weight = 348.02amu
Principal moments of inertia in cm(-1)
A = 0.011665 B = 0.004701 C = 0.003859
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2399.696146 B = 5955.353800 C = 7253.918547
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.263 4.263
2 C -0.110 4.110
3 C 0.223 3.777
4 N -0.425 5.425
5 C -0.307 4.307
6 H 0.107 0.893
7 C 0.031 3.969
8 N -0.868 5.868
9 Si 0.932 3.068
10 H -0.267 1.267
11 H -0.280 1.280
12 H -0.279 1.279
13 C 0.489 3.511
14 O -0.565 6.565
15 C -0.121 4.121
16 C -0.030 4.030
17 C -0.153 4.153
18 Br -0.043 7.043
19 C 0.133 3.867
20 N -0.474 5.474
21 C 0.210 3.790
22 C -0.108 4.108
23 C -0.162 4.162
24 C -0.150 4.150
25 H 0.199 0.801
26 H 0.055 0.945
27 H 0.129 0.871
28 H 0.271 0.729
29 H 0.147 0.853
30 H 0.162 0.838
31 H 0.125 0.875
32 H 0.106 0.894
33 H 0.094 0.906
34 H 0.099 0.901
35 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.226 -10.824 -6.942 12.917
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.282 4.282
2 C -0.111 4.111
3 C 0.101 3.899
4 N -0.142 5.142
5 C -0.434 4.434
6 H 0.125 0.875
7 C -0.173 4.173
8 N -0.506 5.506
9 Si 0.758 3.242
10 H -0.191 1.191
11 H -0.206 1.206
12 H -0.205 1.205
13 C 0.276 3.724
14 O -0.449 6.449
15 C -0.127 4.127
16 C -0.058 4.058
17 C -0.234 4.234
18 Br 0.041 6.959
19 C -0.027 4.027
20 N -0.182 5.182
21 C 0.073 3.927
22 C -0.127 4.127
23 C -0.199 4.199
24 C -0.188 4.188
25 H 0.216 0.784
26 H 0.073 0.927
27 H 0.146 0.854
28 H 0.082 0.918
29 H 0.165 0.835
30 H 0.180 0.820
31 H 0.143 0.857
32 H 0.124 0.876
33 H 0.112 0.888
34 H 0.117 0.883
35 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -1.450 -10.905 -7.511 13.320
hybrid contribution 0.411 0.835 1.355 1.644
sum -1.039 -10.070 -6.156 11.848
Atomic orbital electron populations
1.24274 0.95381 1.03830 1.04685 1.23120 0.94268 0.97007 0.96735
1.18638 0.84474 0.87178 0.99642 1.43640 1.54437 1.12830 1.03278
1.19806 1.26313 0.97677 0.99627 0.87495 1.25449 0.95205 0.99029
0.97586 1.69939 1.27418 1.36599 1.16628 0.85765 0.78663 0.80794
0.78984 1.19065 1.20596 1.20520 1.17633 0.85840 0.86460 0.82488
1.90663 1.48840 1.40696 1.64692 1.21100 0.97318 0.95089 0.99242
1.21702 0.98040 0.90057 0.96010 1.22723 1.02721 0.92584 1.05421
1.96679 1.82714 1.20068 1.96448 1.22730 0.90826 0.95473 0.93689
1.67470 1.28627 0.98094 1.24044 1.20430 0.89922 0.92885 0.89503
1.20859 1.02183 0.93754 0.95922 1.22968 0.91078 1.03175 1.02676
1.22866 0.99936 1.00742 0.95207 0.78420 0.92691 0.85352 0.91807
0.83530 0.82050 0.85710 0.87594 0.88762 0.88271 0.88956
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.26 -5.47 19.25 29.55 0.57 -4.90 16
2 C -0.11 -2.45 11.31 -37.12 -0.42 -2.87 16
3 C 0.22 4.90 4.89 -6.82 -0.03 4.86 16
4 N -0.42 -10.32 2.60 -119.05 -0.31 -10.63 16
5 C -0.31 -7.99 9.35 -15.00 -0.14 -8.13 16
6 H 0.11 2.91 7.34 -52.49 -0.39 2.52 16
7 C 0.03 0.78 5.24 -17.45 -0.09 0.69 16
8 N -0.87 -21.58 8.85 55.50 0.49 -21.08 16
9 Si 0.93 19.71 29.56 -169.99 -5.02 14.68 16
10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16
11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16
12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16
13 C 0.49 11.58 5.86 -12.38 -0.07 11.51 16
14 O -0.57 -15.05 16.46 5.28 0.09 -14.96 16
15 C -0.12 -2.42 4.60 -104.83 -0.48 -2.90 16
16 C -0.03 -0.52 7.75 -38.82 -0.30 -0.82 16
17 C -0.15 -2.26 6.24 -39.43 -0.25 -2.51 16
18 Br -0.04 -0.52 33.73 -68.01 -2.29 -2.82 16
19 C 0.13 1.93 10.93 -17.43 -0.19 1.74 16
20 N -0.47 -7.92 9.28 -9.10 -0.08 -8.01 16
21 C 0.21 3.96 6.50 -82.15 -0.53 3.43 16
22 C -0.11 -1.98 5.21 -91.77 -0.48 -2.46 16
23 C -0.16 -2.37 10.03 -26.69 -0.27 -2.64 16
24 C -0.15 -2.33 10.24 -26.70 -0.27 -2.60 16
25 H 0.20 3.40 7.80 -54.08 -0.42 2.98 16
26 H 0.06 1.06 4.99 -51.93 -0.26 0.80 16
27 H 0.13 2.97 6.14 -51.93 -0.32 2.65 16
28 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16
29 H 0.15 2.33 7.40 -52.48 -0.39 1.94 16
30 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16
31 H 0.13 2.62 7.52 -51.93 -0.39 2.23 16
32 H 0.11 1.51 7.54 -51.93 -0.39 1.12 16
33 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16
34 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16
35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16
LS Contribution 328.71 15.07 4.95 4.95
Total: -1.00 -28.59 328.71 -8.52 -37.11
By element:
Atomic # 1 Polarization: 11.72 SS G_CDS: -3.38 Total: 8.34 kcal
Atomic # 6 Polarization: -4.62 SS G_CDS: -2.96 Total: -7.59 kcal
Atomic # 7 Polarization: -39.82 SS G_CDS: 0.10 Total: -39.72 kcal
Atomic # 8 Polarization: -15.05 SS G_CDS: 0.09 Total: -14.96 kcal
Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal
Atomic # 35 Polarization: -0.52 SS G_CDS: -2.29 Total: -2.82 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -28.59 -8.52 -37.11 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000935813345.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 142.536 kcal
(2) G-P(sol) polarization free energy of solvation -28.590 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.423 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds