Wall clock time and date at job start Wed Apr 1 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46583 * 145.20807 * 3 2 1 5 5 C 1.36873 * 120.00066 * 96.71941 * 4 3 2 6 6 H 1.07995 * 120.00056 * 157.96797 * 5 4 3 7 7 C 1.39051 * 119.99818 * 337.96628 * 5 4 3 8 8 N 1.31364 * 119.99981 * 355.98854 * 7 5 4 9 9 Si 1.86800 * 119.99901 * 175.98848 * 7 5 4 10 10 H 1.48503 * 109.46737 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47110 * 119.99929 * 9 7 5 12 12 H 1.48502 * 109.47007 * 240.00425 * 9 7 5 13 13 C 1.34777 * 119.99597 * 276.71425 * 4 3 2 14 14 O 1.21594 * 119.99425 * 184.80096 * 13 4 3 15 15 C 1.47725 * 120.00319 * 4.80443 * 13 4 3 16 16 C 1.40080 * 120.55862 * 296.26421 * 15 13 4 17 17 C 1.38421 * 118.27131 * 180.26825 * 16 15 13 18 18 Br 1.89095 * 120.35329 * 179.72593 * 17 16 15 19 19 C 1.38464 * 119.29081 * 359.74859 * 17 16 15 20 20 N 1.31920 * 121.07967 * 0.02562 * 19 17 16 21 21 C 1.31681 * 121.89787 * 359.97438 * 20 19 17 22 22 C 1.50698 * 119.70911 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.50209 * 2.97550 * 22 21 20 24 24 C 1.52996 * 117.50432 * 294.31283 * 22 21 20 25 25 H 4.40641 * 5.51293 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47516 * 25.20668 * 3 2 1 27 27 H 1.08998 * 109.47252 * 265.20389 * 3 2 1 28 28 H 0.97001 * 119.99532 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.86453 * 0.03770 * 16 15 13 30 30 H 1.08000 * 119.45840 * 180.02562 * 19 17 16 31 31 H 1.09006 * 115.54975 * 148.63750 * 22 21 20 32 32 H 1.09005 * 117.49706 * 359.97438 * 23 22 21 33 33 H 1.08996 * 117.50187 * 145.01285 * 23 22 21 34 34 H 1.08997 * 117.50035 * 214.98241 * 24 22 21 35 35 H 1.09002 * 117.49609 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1353 -0.7882 5 6 3.4921 2.2991 -0.1632 6 1 4.1642 2.9893 -0.6513 7 6 2.9906 2.5928 1.1000 8 7 2.1123 1.7926 1.6603 9 14 3.5659 4.1251 2.0002 10 1 4.5508 4.8524 1.1598 11 1 2.4016 5.0054 2.2730 12 1 4.2033 3.7352 3.2836 13 6 3.2297 1.0329 -2.1286 14 8 3.7157 1.9413 -2.7744 15 6 2.7443 -0.1828 -2.8133 16 6 3.3435 -1.4251 -2.5688 17 6 2.8545 -2.5323 -3.2404 18 35 3.6246 -4.2366 -2.9608 19 6 1.7958 -2.3785 -4.1195 20 7 1.2485 -1.1961 -4.3261 21 6 1.6779 -0.1136 -3.7115 22 6 1.0165 1.2125 -3.9850 23 6 -0.1872 1.2203 -4.9293 24 6 1.1540 1.7934 -5.3937 25 1 -1.0501 -0.0003 0.0004 26 1 3.0099 -0.9290 -0.4377 27 1 3.0093 0.0867 1.0240 28 1 1.7622 1.9978 2.5414 29 1 4.1680 -1.5161 -1.8772 30 1 1.4119 -3.2407 -4.6446 31 1 1.0058 1.9136 -3.1504 32 1 -0.5006 0.2661 -5.3532 33 1 -0.9896 1.9265 -4.7162 34 1 1.2335 2.8766 -5.4859 35 1 1.7233 1.2166 -6.1226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935813345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:26 Heat of formation + Delta-G solvation = 105.422637 kcal Electronic energy + Delta-G solvation = -22452.410389 eV Core-core repulsion = 19079.198611 eV Total energy + Delta-G solvation = -3373.211778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.021 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51745 -38.33500 -36.68018 -35.27860 -32.92809 -32.37988 -31.62031 -31.17223 -29.37209 -26.64012 -25.40468 -24.29390 -23.45682 -22.03764 -20.67299 -19.66476 -18.00006 -17.15516 -16.82926 -16.44605 -16.02332 -15.23550 -14.89396 -14.38795 -14.05401 -13.87761 -13.77972 -13.39352 -13.14272 -12.51615 -12.35602 -12.25686 -11.52771 -11.50799 -11.38855 -11.20579 -11.16330 -10.64165 -10.49889 -10.44001 -10.27241 -10.15778 -9.63809 -9.54370 -9.50313 -9.34418 -8.91079 -8.63268 -8.43811 -8.00348 -6.44428 -4.06731 0.93297 1.20729 1.53258 3.04783 3.17534 3.23299 3.44712 3.59811 3.85738 4.00262 4.08177 4.21834 4.35881 4.60283 4.76021 4.82996 4.94235 5.18837 5.20702 5.35774 5.39426 5.41603 5.61861 5.77304 5.87887 5.91851 6.09122 6.20106 6.25296 6.41313 6.48802 6.61192 6.79294 7.00831 7.39665 7.85780 7.98599 8.26252 8.75056 8.94203 9.14995 9.68958 10.52826 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.004701 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.696146 B = 5955.353800 C = 7253.918547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.110 4.110 3 C 0.223 3.777 4 N -0.425 5.425 5 C -0.307 4.307 6 H 0.107 0.893 7 C 0.031 3.969 8 N -0.868 5.868 9 Si 0.932 3.068 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.489 3.511 14 O -0.565 6.565 15 C -0.121 4.121 16 C -0.030 4.030 17 C -0.153 4.153 18 Br -0.043 7.043 19 C 0.133 3.867 20 N -0.474 5.474 21 C 0.210 3.790 22 C -0.108 4.108 23 C -0.162 4.162 24 C -0.150 4.150 25 H 0.199 0.801 26 H 0.055 0.945 27 H 0.129 0.871 28 H 0.271 0.729 29 H 0.147 0.853 30 H 0.162 0.838 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 -10.824 -6.942 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.111 4.111 3 C 0.101 3.899 4 N -0.142 5.142 5 C -0.434 4.434 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.506 5.506 9 Si 0.758 3.242 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.276 3.724 14 O -0.449 6.449 15 C -0.127 4.127 16 C -0.058 4.058 17 C -0.234 4.234 18 Br 0.041 6.959 19 C -0.027 4.027 20 N -0.182 5.182 21 C 0.073 3.927 22 C -0.127 4.127 23 C -0.199 4.199 24 C -0.188 4.188 25 H 0.216 0.784 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.082 0.918 29 H 0.165 0.835 30 H 0.180 0.820 31 H 0.143 0.857 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.450 -10.905 -7.511 13.320 hybrid contribution 0.411 0.835 1.355 1.644 sum -1.039 -10.070 -6.156 11.848 Atomic orbital electron populations 1.24274 0.95381 1.03830 1.04685 1.23120 0.94268 0.97007 0.96735 1.18638 0.84474 0.87178 0.99642 1.43640 1.54437 1.12830 1.03278 1.19806 1.26313 0.97677 0.99627 0.87495 1.25449 0.95205 0.99029 0.97586 1.69939 1.27418 1.36599 1.16628 0.85765 0.78663 0.80794 0.78984 1.19065 1.20596 1.20520 1.17633 0.85840 0.86460 0.82488 1.90663 1.48840 1.40696 1.64692 1.21100 0.97318 0.95089 0.99242 1.21702 0.98040 0.90057 0.96010 1.22723 1.02721 0.92584 1.05421 1.96679 1.82714 1.20068 1.96448 1.22730 0.90826 0.95473 0.93689 1.67470 1.28627 0.98094 1.24044 1.20430 0.89922 0.92885 0.89503 1.20859 1.02183 0.93754 0.95922 1.22968 0.91078 1.03175 1.02676 1.22866 0.99936 1.00742 0.95207 0.78420 0.92691 0.85352 0.91807 0.83530 0.82050 0.85710 0.87594 0.88762 0.88271 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.47 19.25 29.55 0.57 -4.90 16 2 C -0.11 -2.45 11.31 -37.12 -0.42 -2.87 16 3 C 0.22 4.90 4.89 -6.82 -0.03 4.86 16 4 N -0.42 -10.32 2.60 -119.05 -0.31 -10.63 16 5 C -0.31 -7.99 9.35 -15.00 -0.14 -8.13 16 6 H 0.11 2.91 7.34 -52.49 -0.39 2.52 16 7 C 0.03 0.78 5.24 -17.45 -0.09 0.69 16 8 N -0.87 -21.58 8.85 55.50 0.49 -21.08 16 9 Si 0.93 19.71 29.56 -169.99 -5.02 14.68 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 13 C 0.49 11.58 5.86 -12.38 -0.07 11.51 16 14 O -0.57 -15.05 16.46 5.28 0.09 -14.96 16 15 C -0.12 -2.42 4.60 -104.83 -0.48 -2.90 16 16 C -0.03 -0.52 7.75 -38.82 -0.30 -0.82 16 17 C -0.15 -2.26 6.24 -39.43 -0.25 -2.51 16 18 Br -0.04 -0.52 33.73 -68.01 -2.29 -2.82 16 19 C 0.13 1.93 10.93 -17.43 -0.19 1.74 16 20 N -0.47 -7.92 9.28 -9.10 -0.08 -8.01 16 21 C 0.21 3.96 6.50 -82.15 -0.53 3.43 16 22 C -0.11 -1.98 5.21 -91.77 -0.48 -2.46 16 23 C -0.16 -2.37 10.03 -26.69 -0.27 -2.64 16 24 C -0.15 -2.33 10.24 -26.70 -0.27 -2.60 16 25 H 0.20 3.40 7.80 -54.08 -0.42 2.98 16 26 H 0.06 1.06 4.99 -51.93 -0.26 0.80 16 27 H 0.13 2.97 6.14 -51.93 -0.32 2.65 16 28 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.15 2.33 7.40 -52.48 -0.39 1.94 16 30 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.13 2.62 7.52 -51.93 -0.39 2.23 16 32 H 0.11 1.51 7.54 -51.93 -0.39 1.12 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -28.59 328.71 -8.52 -37.11 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.38 Total: 8.34 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.96 Total: -7.59 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.10 Total: -39.72 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.09 Total: -14.96 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.59 -8.52 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935813345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.536 kcal (2) G-P(sol) polarization free energy of solvation -28.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds