Wall clock time and date at job start Wed Apr 1 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46583 * 145.20807 * 3 2 1 5 5 C 1.36873 * 120.00066 * 96.71941 * 4 3 2 6 6 H 1.07995 * 120.00056 * 157.96797 * 5 4 3 7 7 C 1.39051 * 119.99818 * 337.96628 * 5 4 3 8 8 N 1.31364 * 119.99981 * 355.98854 * 7 5 4 9 9 Si 1.86800 * 119.99901 * 175.98848 * 7 5 4 10 10 H 1.48503 * 109.46737 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47110 * 119.99929 * 9 7 5 12 12 H 1.48502 * 109.47007 * 240.00425 * 9 7 5 13 13 C 1.34777 * 119.99597 * 276.71425 * 4 3 2 14 14 O 1.21594 * 119.99425 * 184.80096 * 13 4 3 15 15 C 1.47725 * 120.00319 * 4.80443 * 13 4 3 16 16 C 1.40080 * 120.55862 * 296.26421 * 15 13 4 17 17 C 1.38421 * 118.27131 * 180.26825 * 16 15 13 18 18 Br 1.89095 * 120.35329 * 179.72593 * 17 16 15 19 19 C 1.38464 * 119.29081 * 359.74859 * 17 16 15 20 20 N 1.31920 * 121.07967 * 0.02562 * 19 17 16 21 21 C 1.31681 * 121.89787 * 359.97438 * 20 19 17 22 22 C 1.50698 * 119.70911 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.50209 * 2.97550 * 22 21 20 24 24 C 1.52996 * 117.50432 * 294.31283 * 22 21 20 25 25 H 4.40641 * 5.51293 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47516 * 25.20668 * 3 2 1 27 27 H 1.08998 * 109.47252 * 265.20389 * 3 2 1 28 28 H 0.97001 * 119.99532 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.86453 * 0.03770 * 16 15 13 30 30 H 1.08000 * 119.45840 * 180.02562 * 19 17 16 31 31 H 1.09006 * 115.54975 * 148.63750 * 22 21 20 32 32 H 1.09005 * 117.49706 * 359.97438 * 23 22 21 33 33 H 1.08996 * 117.50187 * 145.01285 * 23 22 21 34 34 H 1.08997 * 117.50035 * 214.98241 * 24 22 21 35 35 H 1.09002 * 117.49609 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1353 -0.7882 5 6 3.4921 2.2991 -0.1632 6 1 4.1642 2.9893 -0.6513 7 6 2.9906 2.5928 1.1000 8 7 2.1123 1.7926 1.6603 9 14 3.5659 4.1251 2.0002 10 1 4.5508 4.8524 1.1598 11 1 2.4016 5.0054 2.2730 12 1 4.2033 3.7352 3.2836 13 6 3.2297 1.0329 -2.1286 14 8 3.7157 1.9413 -2.7744 15 6 2.7443 -0.1828 -2.8133 16 6 3.3435 -1.4251 -2.5688 17 6 2.8545 -2.5323 -3.2404 18 35 3.6246 -4.2366 -2.9608 19 6 1.7958 -2.3785 -4.1195 20 7 1.2485 -1.1961 -4.3261 21 6 1.6779 -0.1136 -3.7115 22 6 1.0165 1.2125 -3.9850 23 6 -0.1872 1.2203 -4.9293 24 6 1.1540 1.7934 -5.3937 25 1 -1.0501 -0.0003 0.0004 26 1 3.0099 -0.9290 -0.4377 27 1 3.0093 0.0867 1.0240 28 1 1.7622 1.9978 2.5414 29 1 4.1680 -1.5161 -1.8772 30 1 1.4119 -3.2407 -4.6446 31 1 1.0058 1.9136 -3.1504 32 1 -0.5006 0.2661 -5.3532 33 1 -0.9896 1.9265 -4.7162 34 1 1.2335 2.8766 -5.4859 35 1 1.7233 1.2166 -6.1226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935813345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:25 Heat of formation + Delta-G solvation = 90.823723 kcal Electronic energy + Delta-G solvation = -22453.043446 eV Core-core repulsion = 19079.198611 eV Total energy + Delta-G solvation = -3373.844835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.021 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93342 -40.04847 -37.96254 -37.13541 -34.40472 -33.89314 -33.20244 -32.84688 -30.57017 -28.42351 -27.12479 -25.59292 -25.01528 -23.25347 -22.07234 -21.28018 -19.77164 -18.78349 -18.32827 -18.03864 -17.43525 -16.88242 -16.37784 -16.03587 -15.59128 -15.37757 -15.18403 -14.87029 -14.59255 -14.17153 -14.07343 -13.77506 -13.33075 -12.90432 -12.80180 -12.62077 -12.57611 -12.37173 -12.15824 -11.62312 -11.51756 -11.38402 -11.36655 -11.21789 -10.92096 -10.86128 -10.62476 -10.35603 -9.88419 -9.72603 -8.33412 -6.04843 -0.37322 -0.13419 0.36830 1.33549 1.41517 1.53913 1.76103 2.00912 2.27455 2.35172 2.37462 2.87899 2.98321 3.06466 3.08659 3.45712 3.59275 3.68933 3.83949 3.88380 4.06142 4.14552 4.25084 4.29141 4.53109 4.62385 4.72697 4.85053 4.92948 5.01724 5.08597 5.26223 5.32139 5.37158 5.40021 5.97740 6.36233 6.65551 7.03137 7.07329 7.27821 7.82934 8.61729 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.004701 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.696146 B = 5955.353800 C = 7253.918547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.146 4.146 3 C 0.230 3.770 4 N -0.435 5.435 5 C -0.342 4.342 6 H 0.081 0.919 7 C 0.004 3.996 8 N -0.877 5.877 9 Si 0.992 3.008 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.265 1.265 13 C 0.490 3.510 14 O -0.609 6.609 15 C -0.151 4.151 16 C -0.030 4.030 17 C -0.151 4.151 18 Br -0.008 7.008 19 C 0.146 3.854 20 N -0.474 5.474 21 C 0.205 3.795 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.145 4.145 25 H 0.231 0.769 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.274 0.726 29 H 0.152 0.848 30 H 0.203 0.797 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 -12.800 -7.503 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.148 4.148 3 C 0.108 3.892 4 N -0.152 5.152 5 C -0.470 4.470 6 H 0.099 0.901 7 C -0.199 4.199 8 N -0.514 5.514 9 Si 0.815 3.185 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.190 1.190 13 C 0.278 3.722 14 O -0.495 6.495 15 C -0.157 4.157 16 C -0.058 4.058 17 C -0.233 4.233 18 Br 0.076 6.924 19 C -0.014 4.014 20 N -0.183 5.183 21 C 0.068 3.932 22 C -0.162 4.162 23 C -0.167 4.167 24 C -0.182 4.182 25 H 0.248 0.752 26 H 0.096 0.904 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.170 0.830 30 H 0.219 0.781 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.701 -12.913 -8.055 15.457 hybrid contribution 0.785 1.301 1.477 2.120 sum -1.916 -11.612 -6.578 13.483 Atomic orbital electron populations 1.25091 0.96307 1.02317 1.03187 1.23381 0.94871 0.98414 0.98117 1.18567 0.84823 0.87285 0.98556 1.43753 1.54578 1.12965 1.03858 1.19708 1.27770 0.98685 1.00802 0.90064 1.26092 0.94987 1.01379 0.97491 1.70045 1.27345 1.37313 1.16716 0.84891 0.78030 0.77518 0.78029 1.19790 1.20385 1.19018 1.18148 0.84477 0.87300 0.82243 1.90600 1.50580 1.42769 1.65590 1.20787 0.99368 0.94516 1.01072 1.21771 0.97960 0.89827 0.96264 1.22847 1.02492 0.93440 1.04486 1.96724 1.82292 1.17022 1.96342 1.23444 0.89716 0.95743 0.92543 1.67544 1.28719 0.98171 1.23885 1.20445 0.89683 0.93703 0.89381 1.20740 1.05864 0.93631 0.95987 1.23051 0.90433 1.03778 0.99470 1.22943 1.00812 1.01157 0.93333 0.75237 0.90415 0.86977 0.91548 0.83046 0.78071 0.89652 0.86525 0.87026 0.87771 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.19 19.25 74.32 1.43 -8.76 16 2 C -0.15 -6.57 11.31 31.13 0.35 -6.22 16 3 C 0.23 10.35 4.89 84.57 0.41 10.76 16 4 N -0.44 -22.16 2.60 -648.81 -1.69 -23.85 16 5 C -0.34 -18.76 9.35 84.10 0.79 -17.98 16 6 H 0.08 4.75 7.34 -2.91 -0.02 4.73 16 7 C 0.00 0.18 5.24 84.96 0.45 0.62 16 8 N -0.88 -44.20 8.85 21.68 0.19 -44.00 16 9 Si 0.99 41.20 29.56 68.60 2.03 43.23 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 13 C 0.49 24.45 5.86 86.75 0.51 24.95 16 14 O -0.61 -34.56 16.46 -4.01 -0.07 -34.62 16 15 C -0.15 -6.16 4.60 -20.00 -0.09 -6.25 16 16 C -0.03 -1.02 7.75 22.76 0.18 -0.84 16 17 C -0.15 -4.11 6.24 22.37 0.14 -3.97 16 18 Br -0.01 -0.17 33.73 -20.37 -0.69 -0.86 16 19 C 0.15 3.77 10.93 84.73 0.93 4.70 16 20 N -0.47 -14.91 9.28 -182.72 -1.70 -16.61 16 21 C 0.21 7.70 6.50 42.91 0.28 7.98 16 22 C -0.14 -5.33 5.21 -11.54 -0.06 -5.39 16 23 C -0.13 -3.63 10.03 30.62 0.31 -3.32 16 24 C -0.14 -4.46 10.24 30.62 0.31 -4.14 16 25 H 0.23 7.37 7.80 -4.41 -0.03 7.34 16 26 H 0.08 3.04 4.99 -2.39 -0.01 3.03 16 27 H 0.11 5.36 6.14 -2.39 -0.01 5.34 16 28 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 29 H 0.15 4.78 7.40 -2.91 -0.02 4.76 16 30 H 0.20 3.57 8.06 -2.91 -0.02 3.54 16 31 H 0.09 3.83 7.52 -2.38 -0.02 3.81 16 32 H 0.12 3.01 7.54 -2.38 -0.02 2.99 16 33 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.10 2.86 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -64.56 328.71 5.14 -59.42 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 1.13 Total: 25.15 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 5.93 Total: -7.86 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -3.19 Total: -84.46 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.07 Total: -34.62 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -0.69 Total: -0.86 kcal Total: -64.56 5.14 -59.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935813345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.242 kcal (2) G-P(sol) polarization free energy of solvation -64.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds