Wall clock time and date at job start Wed Apr 1 2020 05:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00047 * 2 1 4 4 N 1.46508 * 109.47173 * 125.09896 * 3 2 1 5 5 C 1.36733 * 127.13731 * 88.41892 * 4 3 2 6 6 C 1.50705 * 126.34847 * 0.02562 * 5 4 3 7 7 H 1.08996 * 109.47295 * 359.97438 * 6 5 4 8 8 C 1.53009 * 109.46710 * 239.99614 * 6 5 4 9 9 C 1.52999 * 109.47541 * 119.99708 * 6 5 4 10 10 C 1.50697 * 109.46982 * 184.99731 * 9 6 5 11 11 H 1.08000 * 120.00207 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99715 * 179.97438 * 10 9 6 13 13 N 1.31516 * 119.99790 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99860 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47401 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47238 * 120.00032 * 14 12 10 17 17 H 1.48503 * 109.46948 * 240.00086 * 14 12 10 18 18 N 1.30294 * 107.30713 * 180.26228 * 5 4 3 19 19 N 1.28528 * 110.04822 * 359.56089 * 18 5 4 20 20 C 1.31222 * 109.86310 * 0.45469 * 19 18 5 21 21 N 1.38579 * 126.47254 * 179.72809 * 20 19 18 22 22 C 1.46952 * 111.00282 * 298.51550 * 21 20 19 23 23 C 1.53046 * 109.36493 * 183.19132 * 22 21 20 24 24 N 1.46959 * 109.36500 * 301.59555 * 23 22 21 25 25 C 1.46899 * 110.99849 * 183.18851 * 24 23 22 26 26 C 1.53004 * 109.47046 * 66.05073 * 25 24 23 27 27 C 1.46952 * 110.87729 * 59.32165 * 24 23 22 28 28 H 1.09003 * 109.49165 * 60.64901 * 27 24 23 29 29 C 1.53000 * 109.48974 * 180.68937 * 27 24 23 30 30 C 1.46959 * 111.00164 * 62.31422 * 21 20 19 31 31 H 1.07993 * 119.99912 * 359.97438 * 1 2 3 32 32 H 1.08005 * 119.99976 * 180.02562 * 1 2 3 33 33 H 1.08006 * 119.99960 * 180.02562 * 2 1 3 34 34 H 1.08996 * 109.47465 * 5.09932 * 3 2 1 35 35 H 1.09004 * 109.46799 * 245.09529 * 3 2 1 36 36 H 1.08999 * 109.46877 * 59.99574 * 8 6 5 37 37 H 1.08996 * 109.46873 * 299.99807 * 8 6 5 38 38 H 1.08999 * 109.46955 * 179.97438 * 8 6 5 39 39 H 1.09004 * 109.46510 * 304.99771 * 9 6 5 40 40 H 1.09002 * 109.47224 * 64.99336 * 9 6 5 41 41 H 0.97004 * 119.99481 * 179.97438 * 13 12 10 42 42 H 1.09008 * 109.48850 * 303.16014 * 22 21 20 43 43 H 1.09003 * 109.49165 * 63.22070 * 22 21 20 44 44 H 1.08998 * 109.49015 * 61.56658 * 23 22 21 45 45 H 1.09000 * 109.48702 * 181.60829 * 23 22 21 46 46 H 1.08998 * 109.46890 * 186.04520 * 25 24 23 47 47 H 1.08997 * 109.47522 * 306.04722 * 25 24 23 48 48 H 1.08997 * 109.47246 * 59.99480 * 26 25 24 49 49 H 1.08998 * 109.46876 * 179.97438 * 26 25 24 50 50 H 1.08998 * 109.46825 * 299.99487 * 26 25 24 51 51 H 1.09000 * 109.47115 * 59.99794 * 29 27 24 52 52 H 1.08992 * 109.47492 * 179.97438 * 29 27 24 53 53 H 1.09002 * 109.47309 * 300.00293 * 29 27 24 54 54 H 1.08997 * 109.48667 * 296.78116 * 30 21 20 55 55 H 1.09008 * 109.48396 * 56.84323 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9955 1.3309 1.1301 5 6 4.2835 0.8723 1.1486 6 6 5.0223 0.2380 -0.0016 7 1 4.3692 0.1943 -0.8732 8 6 5.4499 -1.1790 0.3863 9 6 6.2615 1.0717 -0.3337 10 6 6.9324 0.5079 -1.5597 11 1 6.5163 -0.3580 -2.0530 12 6 8.0769 1.0984 -2.0523 13 7 8.5827 2.1539 -1.4524 14 14 8.9081 0.4001 -3.5724 15 1 8.1466 -0.7798 -4.0551 16 1 8.9446 1.4354 -4.6363 17 1 10.2944 -0.0108 -3.2338 18 7 4.7520 1.0806 2.3464 19 7 3.8575 1.6438 3.0776 20 6 2.7581 1.8176 2.3826 21 7 1.5789 2.3878 2.8351 22 6 1.0096 1.6100 3.9444 23 6 -0.3282 2.2253 4.3614 24 7 -0.1187 3.6251 4.7567 25 6 -1.3687 4.2295 5.2363 26 6 -1.8005 3.5454 6.5350 27 6 0.4507 4.4029 3.6474 28 1 -0.2366 4.3866 2.8015 29 6 0.6714 5.8483 4.0979 30 6 1.7885 3.7876 3.2303 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9354 0.0004 33 1 1.8500 -0.9354 -0.0004 34 1 1.3588 2.1316 0.0913 35 1 2.6199 1.4033 -0.9322 36 1 4.5670 -1.7729 0.6229 37 1 6.1029 -1.1356 1.2579 38 1 5.9839 -1.6380 -0.4457 39 1 5.9651 2.1033 -0.5236 40 1 6.9554 1.0418 0.5064 41 1 9.3881 2.5691 -1.7988 42 1 0.8520 0.5803 3.6233 43 1 1.6968 1.6263 4.7903 44 1 -1.0243 2.1842 3.5237 45 1 -0.7386 1.6671 5.2029 46 1 -1.2112 5.2922 5.4205 47 1 -2.1461 4.1026 4.4829 48 1 -1.0231 3.6723 7.2884 49 1 -2.7278 3.9942 6.8911 50 1 -1.9580 2.4827 6.3508 51 1 1.3593 5.8644 4.9433 52 1 1.0941 6.4248 3.2751 53 1 -0.2814 6.2854 4.3965 54 1 2.4846 3.8286 4.0681 55 1 2.1987 4.3456 2.3885 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121501829.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:13 Heat of formation + Delta-G solvation = 89.995014 kcal Electronic energy + Delta-G solvation = -32019.306245 eV Core-core repulsion = 28092.487788 eV Total energy + Delta-G solvation = -3926.818458 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.06618 -40.71207 -37.53892 -37.26413 -36.54932 -34.30254 -33.85363 -33.64468 -31.94881 -30.01328 -28.86512 -28.34640 -27.85974 -26.78679 -25.90917 -24.03118 -23.57862 -22.87028 -21.97521 -21.22820 -20.78878 -20.29634 -18.66585 -18.34362 -17.51491 -17.44801 -16.69752 -16.47921 -16.33604 -16.04491 -15.95227 -15.54817 -15.43130 -15.06979 -14.95979 -14.60815 -14.54409 -14.27021 -13.69590 -13.57797 -13.41622 -13.21095 -13.04241 -12.99827 -12.91923 -12.80091 -12.77690 -12.70655 -12.49141 -12.41927 -12.26310 -12.25282 -12.08381 -12.01291 -11.76316 -11.62182 -11.45563 -11.38776 -11.17776 -11.05891 -10.56884 -10.52811 -9.98903 -9.97933 -9.28928 -8.16816 -6.28467 0.67321 0.91692 1.43193 1.44359 1.54200 1.57201 1.76804 2.43194 2.62986 2.81130 3.17321 3.42140 3.56750 3.66363 3.82267 3.84389 3.95138 3.97501 4.12712 4.14364 4.18181 4.23011 4.29054 4.40254 4.44179 4.47480 4.50137 4.52093 4.57748 4.64657 4.69439 4.70284 4.75266 4.83765 4.90051 4.91900 4.96977 5.02767 5.07652 5.10024 5.15665 5.17152 5.31686 5.35204 5.42170 5.44423 5.49818 5.53751 5.59275 5.66399 5.70324 5.82996 6.08205 6.11056 6.19087 6.22056 6.87369 7.40680 7.70698 8.95926 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.002502 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.812895 B =11188.495645 C =11820.056089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.197 4.197 3 C 0.135 3.865 4 N -0.458 5.458 5 C 0.208 3.792 6 C 0.010 3.990 7 H 0.094 0.906 8 C -0.117 4.117 9 C 0.050 3.950 10 C -0.526 4.526 11 H 0.077 0.923 12 C -0.004 4.004 13 N -0.937 5.937 14 Si 0.967 3.033 15 H -0.252 1.252 16 H -0.282 1.282 17 H -0.284 1.284 18 N -0.329 5.329 19 N -0.348 5.348 20 C 0.339 3.661 21 N -0.448 5.448 22 C 0.072 3.928 23 C 0.069 3.931 24 N -0.548 5.548 25 C 0.047 3.953 26 C -0.146 4.146 27 C 0.096 3.904 28 H 0.058 0.942 29 C -0.144 4.144 30 C 0.074 3.926 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.075 0.925 39 H -0.022 1.022 40 H -0.011 1.011 41 H 0.261 0.739 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.040 0.960 48 H 0.052 0.948 49 H 0.072 0.928 50 H 0.055 0.945 51 H 0.056 0.944 52 H 0.066 0.934 53 H 0.081 0.919 54 H 0.038 0.962 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.213 1.375 8.271 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.216 4.216 3 C 0.014 3.986 4 N -0.150 5.150 5 C -0.061 4.061 6 C -0.011 4.011 7 H 0.112 0.888 8 C -0.175 4.175 9 C 0.012 3.988 10 C -0.564 4.564 11 H 0.095 0.905 12 C -0.201 4.201 13 N -0.577 5.577 14 Si 0.792 3.208 15 H -0.176 1.176 16 H -0.207 1.207 17 H -0.210 1.210 18 N -0.168 5.168 19 N -0.192 5.192 20 C -0.018 4.018 21 N -0.174 5.174 22 C -0.055 4.055 23 C -0.059 4.059 24 N -0.275 5.275 25 C -0.080 4.080 26 C -0.204 4.204 27 C -0.012 4.012 28 H 0.076 0.924 29 C -0.202 4.202 30 C -0.054 4.054 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.094 0.906 39 H -0.003 1.003 40 H 0.008 0.992 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.121 0.879 46 H 0.105 0.895 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.091 0.909 50 H 0.074 0.926 51 H 0.075 0.925 52 H 0.085 0.915 53 H 0.100 0.900 54 H 0.056 0.944 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.156 1.529 9.429 28.787 hybrid contribution 0.513 0.046 -1.622 1.702 sum -26.643 1.575 7.807 27.808 Atomic orbital electron populations 1.24110 0.94518 1.03705 0.94696 1.22921 0.97012 0.96705 1.04962 1.21199 0.91484 0.99201 0.86704 1.46570 1.11877 1.44922 1.11592 1.25394 0.82898 1.00216 0.97576 1.19755 0.95643 0.95768 0.89962 0.88803 1.21579 1.00740 0.93373 1.01798 1.18852 0.91290 0.92954 0.95674 1.21588 1.09794 1.13824 1.11168 0.90483 1.26035 0.98127 0.95228 1.00723 1.70166 1.22460 1.22838 1.42270 0.85359 0.78169 0.78739 0.78541 1.17576 1.20744 1.21011 1.73965 1.23788 1.17086 1.01962 1.74457 0.99181 1.18391 1.27142 1.22485 0.93458 1.01626 0.84236 1.59049 1.17930 1.03316 1.37111 1.22228 0.96372 0.96740 0.90169 1.22141 0.94076 0.89296 1.00406 1.62193 1.28560 1.02075 1.34650 1.22221 0.88817 0.99999 0.96918 1.21783 1.01294 1.00694 0.96614 1.21548 0.93319 0.93891 0.92482 0.92447 1.21872 1.03112 0.93217 1.01955 1.22295 0.98354 0.85340 0.99387 0.86814 0.86147 0.87550 0.86515 0.87987 0.92017 0.94104 0.90587 1.00328 0.99215 0.92986 0.90163 0.94383 0.92911 0.87932 0.89498 0.94128 0.92862 0.90920 0.92567 0.92522 0.91466 0.90049 0.94363 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 14.32 67.78 0.97 -0.91 16 2 C -0.20 -3.96 9.85 25.65 0.25 -3.70 16 3 C 0.13 3.29 6.29 85.63 0.54 3.83 16 4 N -0.46 -15.46 2.79 -518.89 -1.45 -16.91 16 5 C 0.21 8.64 6.58 137.64 0.91 9.54 16 6 C 0.01 0.40 2.71 -11.54 -0.03 0.37 16 7 H 0.09 3.49 6.98 -2.39 -0.02 3.47 16 8 C -0.12 -4.45 8.99 71.99 0.65 -3.80 16 9 C 0.05 2.73 4.43 29.85 0.13 2.86 16 10 C -0.53 -28.89 8.41 25.60 0.22 -28.67 16 11 H 0.08 3.88 7.06 -2.91 -0.02 3.86 16 12 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 13 N -0.94 -58.26 13.29 21.45 0.28 -57.97 16 14 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 15 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 N -0.33 -15.50 12.18 -49.54 -0.60 -16.11 16 19 N -0.35 -14.94 12.19 -58.01 -0.71 -15.64 16 20 C 0.34 11.70 6.45 260.11 1.68 13.38 16 21 N -0.45 -11.66 4.73 -705.54 -3.33 -14.99 16 22 C 0.07 1.65 5.53 86.31 0.48 2.12 16 23 C 0.07 1.09 5.41 86.31 0.47 1.56 16 24 N -0.55 -9.00 4.53 -870.51 -3.94 -12.95 16 25 C 0.05 0.55 5.44 86.30 0.47 1.02 16 26 C -0.15 -1.49 9.84 71.98 0.71 -0.78 16 27 C 0.10 1.68 2.56 44.92 0.12 1.80 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 C -0.14 -2.08 8.89 71.98 0.64 -1.44 16 30 C 0.07 1.84 4.82 86.31 0.42 2.25 16 31 H 0.11 1.32 7.84 -2.91 -0.02 1.29 16 32 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.11 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.12 2.40 7.79 -2.39 -0.02 2.38 16 35 H 0.10 2.53 7.30 -2.38 -0.02 2.51 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 2.85 6.95 -2.39 -0.02 2.83 16 39 H -0.02 -1.30 8.14 -2.38 -0.02 -1.32 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.08 1.79 8.13 -2.38 -0.02 1.78 16 43 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.10 1.34 6.34 -2.39 -0.02 1.32 16 46 H 0.09 0.91 5.73 -2.39 -0.01 0.89 16 47 H 0.04 0.42 8.12 -2.39 -0.02 0.40 16 48 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.06 0.55 6.49 -2.39 -0.02 0.54 16 51 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.08 0.87 6.15 -2.39 -0.01 0.86 16 54 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 55 H 0.07 1.87 8.13 -2.38 -0.02 1.86 16 Total: -1.00 -74.42 431.65 2.18 -72.24 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.84 Total: 16.94 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 9.06 Total: -0.31 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -9.75 Total: -134.57 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -74.42 2.18 -72.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121501829.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.231 kcal (2) G-P(sol) polarization free energy of solvation -74.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds