Wall clock time and date at job start Wed Apr 1 2020 04:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00218 * 2 1 4 4 N 1.46498 * 109.47038 * 124.99794 * 3 2 1 5 5 C 1.36738 * 127.13469 * 91.26558 * 4 3 2 6 6 C 1.50702 * 126.34981 * 0.02562 * 5 4 3 7 7 C 1.52996 * 109.47216 * 89.99931 * 6 5 4 8 8 C 1.50697 * 109.46869 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00544 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99842 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00334 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00040 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46786 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46818 * 120.00462 * 12 10 8 15 15 H 1.48499 * 109.47378 * 240.00178 * 12 10 8 16 16 N 1.30300 * 107.30295 * 180.26254 * 5 4 3 17 17 N 1.28523 * 110.05375 * 359.55890 * 16 5 4 18 18 C 1.31214 * 109.86060 * 0.45307 * 17 16 5 19 19 N 1.38580 * 126.47457 * 179.72499 * 18 17 16 20 20 C 1.46962 * 110.99418 * 62.36683 * 19 18 17 21 21 C 1.53055 * 109.36214 * 176.81327 * 20 19 18 22 22 N 1.46953 * 109.36646 * 58.39729 * 21 20 19 23 23 C 1.46900 * 111.00073 * 176.81112 * 22 21 20 24 24 C 1.53005 * 109.47192 * 183.79919 * 23 22 21 25 25 C 1.52998 * 109.47547 * 303.80317 * 23 22 21 26 26 C 1.53006 * 109.47001 * 63.80187 * 23 22 21 27 27 C 1.46962 * 110.88006 * 300.68124 * 22 21 20 28 28 C 1.46953 * 111.00147 * 298.56940 * 19 18 17 29 29 H 1.08001 * 120.00079 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99891 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99817 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.46881 * 5.00071 * 3 2 1 33 33 H 1.08998 * 109.47333 * 245.00025 * 3 2 1 34 34 H 1.09001 * 109.46864 * 329.99468 * 6 5 4 35 35 H 1.09000 * 109.47116 * 210.00285 * 6 5 4 36 36 H 1.09000 * 109.47296 * 60.00439 * 7 6 5 37 37 H 1.09005 * 109.47144 * 299.99762 * 7 6 5 38 38 H 0.96996 * 120.00646 * 179.97438 * 11 10 8 39 39 H 1.08995 * 109.48941 * 296.77524 * 20 19 18 40 40 H 1.08992 * 109.49334 * 56.84637 * 20 19 18 41 41 H 1.09007 * 109.48630 * 298.43049 * 21 20 19 42 42 H 1.09001 * 109.50735 * 178.37905 * 21 20 19 43 43 H 1.08994 * 109.46630 * 60.00287 * 24 23 22 44 44 H 1.09003 * 109.46853 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.46832 * 300.00434 * 24 23 22 46 46 H 1.08999 * 109.46726 * 59.99342 * 25 23 22 47 47 H 1.08994 * 109.47508 * 180.02562 * 25 23 22 48 48 H 1.09006 * 109.46742 * 300.00311 * 25 23 22 49 49 H 1.09002 * 109.47117 * 60.00014 * 26 23 22 50 50 H 1.08994 * 109.46914 * 179.97438 * 26 23 22 51 51 H 1.09004 * 109.47042 * 299.99974 * 26 23 22 52 52 H 1.08997 * 109.48561 * 299.34752 * 27 22 21 53 53 H 1.09004 * 109.50207 * 179.29544 * 27 22 21 54 54 H 1.08996 * 109.48612 * 303.15000 * 28 19 18 55 55 H 1.08994 * 109.49255 * 63.19581 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 4.2984 0.9224 1.1373 6 6 5.0610 0.3525 -0.0309 7 6 5.7376 1.4882 -0.8011 8 6 6.4997 0.9183 -1.9696 9 1 6.5016 -0.1473 -2.1451 10 6 7.1945 1.7573 -2.8147 11 7 7.1927 3.0549 -2.6008 12 14 8.1398 1.0508 -4.2628 13 1 7.9841 -0.4258 -4.2825 14 1 7.6081 1.6212 -5.5266 15 1 9.5782 1.3957 -4.1308 16 7 4.7585 1.1117 2.3416 17 7 3.8432 1.6175 3.0887 18 6 2.7380 1.7704 2.3980 19 7 1.5378 2.2808 2.8664 20 6 1.6935 3.6752 3.3035 21 6 0.3330 4.2258 3.7378 22 7 -0.2056 3.3937 4.8227 23 6 -1.4778 3.9349 5.3193 24 6 -1.9587 3.0990 6.5072 25 6 -1.2764 5.3849 5.7641 26 6 -2.5236 3.8844 4.2036 27 6 -0.3612 1.9993 4.3855 28 6 0.9993 1.4488 3.9514 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4025 -0.9313 34 1 4.3729 -0.1751 -0.6914 35 1 5.8186 -0.3413 0.3335 36 1 6.4258 2.0157 -0.1406 37 1 4.9800 2.1820 -1.1655 38 1 7.6818 3.6452 -3.1951 39 1 2.3877 3.7179 4.1428 40 1 2.0816 4.2736 2.4794 41 1 -0.3533 4.2085 2.8912 42 1 0.4506 5.2507 4.0897 43 1 -1.2137 3.1351 7.3019 44 1 -2.9029 3.5004 6.8753 45 1 -2.1022 2.0661 6.1902 46 1 -0.9338 5.9802 4.9178 47 1 -2.2203 5.7863 6.1330 48 1 -0.5313 5.4208 6.5590 49 1 -2.6672 2.8514 3.8866 50 1 -3.4677 4.2855 4.5721 51 1 -2.1811 4.4799 3.3572 52 1 -1.0555 1.9567 3.5464 53 1 -0.7496 1.4007 5.2096 54 1 0.8813 0.4240 3.5994 55 1 1.6857 1.4658 4.7978 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121622926.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:54 Heat of formation + Delta-G solvation = 92.727900 kcal Electronic energy + Delta-G solvation = -31914.689989 eV Core-core repulsion = 27987.990039 eV Total energy + Delta-G solvation = -3926.699951 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.05442 -40.96245 -38.17442 -37.23202 -35.99675 -34.04602 -33.80815 -32.91182 -32.30756 -30.17601 -28.27435 -28.19377 -28.01574 -27.25478 -26.65565 -24.31119 -23.84888 -22.77296 -21.88077 -21.15688 -20.85055 -19.66164 -18.68564 -18.43427 -17.52249 -17.33592 -16.54283 -16.50803 -16.10711 -15.94587 -15.86772 -15.63463 -15.34427 -15.00350 -14.90177 -14.61574 -14.56627 -14.48328 -14.20589 -13.55574 -13.46986 -13.30538 -13.05278 -12.90589 -12.78604 -12.73347 -12.69566 -12.68858 -12.54787 -12.49781 -12.43614 -12.13135 -11.92235 -11.90968 -11.81085 -11.73660 -11.58100 -11.33558 -11.29306 -11.07856 -10.59329 -10.53248 -9.98185 -9.97133 -9.19888 -8.21354 -6.33647 0.66885 0.92086 1.42094 1.43584 1.55607 1.56707 1.73141 2.41295 2.65319 2.82307 3.13070 3.45617 3.60915 3.70416 3.81399 3.82603 4.01325 4.04801 4.05678 4.15801 4.19348 4.24173 4.25766 4.27961 4.35965 4.49953 4.55233 4.62612 4.66634 4.69784 4.75373 4.76375 4.80441 4.84702 4.87980 4.90488 4.95526 4.98836 5.01670 5.04791 5.07261 5.10078 5.29085 5.38680 5.42291 5.48555 5.50632 5.56867 5.57829 5.58959 5.69483 5.77319 6.10979 6.13026 6.16561 6.24906 6.82287 7.36471 7.66928 8.91069 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.002311 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.343536 B =12113.322800 C =12437.468056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.196 4.196 3 C 0.137 3.863 4 N -0.455 5.455 5 C 0.203 3.797 6 C -0.015 4.015 7 C 0.044 3.956 8 C -0.537 4.537 9 H 0.073 0.927 10 C 0.000 4.000 11 N -0.935 5.935 12 Si 0.968 3.032 13 H -0.256 1.256 14 H -0.277 1.277 15 H -0.283 1.283 16 N -0.334 5.334 17 N -0.346 5.346 18 C 0.341 3.659 19 N -0.447 5.447 20 C 0.068 3.932 21 C 0.067 3.933 22 N -0.538 5.538 23 C 0.101 3.899 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.176 4.176 27 C 0.066 3.934 28 C 0.074 3.926 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.089 0.911 36 H -0.017 1.017 37 H -0.006 1.006 38 H 0.263 0.737 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.053 0.947 52 H 0.056 0.944 53 H 0.101 0.899 54 H 0.078 0.922 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.764 -0.455 12.689 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.215 4.215 3 C 0.016 3.984 4 N -0.147 5.147 5 C -0.065 4.065 6 C -0.055 4.055 7 C 0.005 3.995 8 C -0.575 4.575 9 H 0.091 0.909 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.793 3.207 13 H -0.180 1.180 14 H -0.203 1.203 15 H -0.209 1.209 16 N -0.174 5.174 17 N -0.190 5.190 18 C -0.016 4.016 19 N -0.174 5.174 20 C -0.059 4.059 21 C -0.061 4.061 22 N -0.263 5.263 23 C 0.012 3.988 24 C -0.195 4.195 25 C -0.198 4.198 26 C -0.235 4.235 27 C -0.062 4.062 28 C -0.054 4.054 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.001 0.999 37 H 0.013 0.987 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.090 0.910 51 H 0.072 0.928 52 H 0.074 0.926 53 H 0.119 0.881 54 H 0.097 0.903 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -25.769 -0.268 13.802 29.234 hybrid contribution 0.376 0.094 -1.848 1.888 sum -25.393 -0.174 11.954 28.066 Atomic orbital electron populations 1.24105 0.94479 1.03699 0.94660 1.22894 0.97018 0.96576 1.04998 1.21142 0.91483 0.99155 0.86591 1.46511 1.10886 1.46503 1.10801 1.25388 0.82856 1.00812 0.97474 1.20155 0.97456 0.98541 0.89329 1.18830 0.94101 0.92795 0.93726 1.21606 1.30737 0.94338 1.10815 0.90922 1.26001 0.97542 0.95052 1.01176 1.70124 1.43487 1.04287 1.39576 0.85346 0.77830 0.79244 0.78314 1.17955 1.20313 1.20920 1.73951 1.23906 1.18205 1.01299 1.74416 0.98455 1.19070 1.27022 1.22507 0.93298 1.02031 0.83768 1.59061 1.17431 1.03785 1.37151 1.22248 0.98897 0.85711 0.99068 1.22155 0.93007 0.97717 0.93240 1.62388 1.27471 1.01942 1.34489 1.21148 0.86967 0.95669 0.94980 1.21880 1.01227 0.99559 0.96824 1.21920 1.02417 0.93998 1.01481 1.22444 0.99881 1.02213 0.98965 1.22188 0.94032 0.89820 1.00177 1.22218 0.96579 0.96030 0.90529 0.85983 0.86931 0.87460 0.86837 0.88503 0.88691 0.89270 0.99904 0.98742 0.92779 0.94189 0.91122 0.92814 0.88331 0.92623 0.90954 0.92203 0.92457 0.90898 0.92584 0.92259 0.91036 0.92757 0.92605 0.88061 0.90328 0.94295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 14.32 67.78 0.97 -1.06 16 2 C -0.20 -4.23 9.85 25.65 0.25 -3.98 16 3 C 0.14 3.68 6.34 85.63 0.54 4.22 16 4 N -0.46 -15.80 2.79 -518.91 -1.45 -17.25 16 5 C 0.20 8.46 7.32 137.64 1.01 9.46 16 6 C -0.02 -0.63 5.35 29.85 0.16 -0.47 16 7 C 0.04 2.32 4.95 29.85 0.15 2.46 16 8 C -0.54 -29.64 9.11 25.60 0.23 -29.40 16 9 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 10 C 0.00 0.01 5.46 84.66 0.46 0.47 16 11 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 12 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 13 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 N -0.33 -15.38 12.18 -49.53 -0.60 -15.98 16 17 N -0.35 -14.60 12.19 -58.01 -0.71 -15.31 16 18 C 0.34 11.82 6.45 260.11 1.68 13.50 16 19 N -0.45 -11.70 4.73 -705.56 -3.33 -15.03 16 20 C 0.07 1.70 5.53 86.31 0.48 2.17 16 21 C 0.07 1.17 4.83 86.31 0.42 1.58 16 22 N -0.54 -8.70 4.53 -846.16 -3.83 -12.53 16 23 C 0.10 1.21 0.71 3.53 0.00 1.21 16 24 C -0.14 -1.43 8.25 71.98 0.59 -0.84 16 25 C -0.14 -1.58 8.13 71.98 0.58 -1.00 16 26 C -0.18 -1.80 7.78 71.98 0.56 -1.24 16 27 C 0.07 1.04 4.82 86.31 0.42 1.45 16 28 C 0.07 1.67 5.53 86.31 0.48 2.14 16 29 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.11 1.48 7.84 -2.91 -0.02 1.45 16 31 H 0.11 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.11 2.64 7.79 -2.38 -0.02 2.62 16 33 H 0.10 2.84 7.81 -2.39 -0.02 2.82 16 34 H 0.09 3.46 7.88 -2.39 -0.02 3.44 16 35 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 36 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 37 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 38 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 41 H 0.05 0.88 6.57 -2.38 -0.02 0.86 16 42 H 0.10 1.53 6.06 -2.39 -0.01 1.52 16 43 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.06 0.58 6.34 -2.39 -0.02 0.57 16 46 H 0.06 0.65 6.28 -2.39 -0.01 0.64 16 47 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 49 H 0.06 0.62 6.48 -2.39 -0.02 0.60 16 50 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.05 0.62 6.56 -2.39 -0.02 0.60 16 52 H 0.06 0.81 6.48 -2.39 -0.02 0.80 16 53 H 0.10 1.33 6.14 -2.38 -0.01 1.32 16 54 H 0.08 1.76 8.13 -2.39 -0.02 1.74 16 55 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -71.86 427.33 2.22 -69.64 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.85 Total: 16.91 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 8.98 Total: 0.69 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -9.64 Total: -132.73 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.86 2.22 -69.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121622926.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.372 kcal (2) G-P(sol) polarization free energy of solvation -71.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds