Wall clock time and date at job start Wed Apr 1 2020 04:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99956 * 2 1 4 4 N 1.46501 * 109.47088 * 125.00027 * 3 2 1 5 5 C 1.36731 * 127.13678 * 264.38551 * 4 3 2 6 6 C 1.50710 * 126.34766 * 359.96837 * 5 4 3 7 7 C 1.52994 * 109.47076 * 89.99716 * 6 5 4 8 8 C 1.50710 * 109.47076 * 179.97438 * 7 6 5 9 9 H 1.07996 * 119.99571 * 0.02562 * 8 7 6 10 10 C 1.37871 * 119.99814 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00594 * 0.02562 * 10 8 7 12 12 Si 1.86809 * 119.99570 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47120 * 90.00068 * 12 10 8 14 14 H 1.48498 * 109.46897 * 209.99957 * 12 10 8 15 15 H 1.48502 * 109.47164 * 330.00119 * 12 10 8 16 16 N 1.30295 * 107.30618 * 179.83644 * 5 4 3 17 17 N 1.28518 * 110.05339 * 0.43868 * 16 5 4 18 18 C 1.31221 * 109.86349 * 359.72242 * 17 16 5 19 19 N 1.38580 * 126.47705 * 179.97438 * 18 17 16 20 20 C 1.46954 * 110.99922 * 273.86680 * 19 18 17 21 21 C 1.53052 * 109.36540 * 183.18905 * 20 19 18 22 22 N 1.46955 * 109.36251 * 301.59892 * 21 20 19 23 23 C 1.46896 * 110.99983 * 183.18793 * 22 21 20 24 24 C 1.46954 * 110.88105 * 59.32029 * 22 21 20 25 25 H 1.08996 * 109.51120 * 60.65597 * 24 22 21 26 26 C 1.52998 * 109.49052 * 180.71364 * 24 22 21 27 27 C 1.53001 * 109.47396 * 59.63963 * 26 24 22 28 28 C 1.53000 * 109.47644 * 179.64016 * 26 24 22 29 29 C 1.46955 * 110.99947 * 37.66623 * 19 18 17 30 30 H 1.08000 * 119.99799 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99854 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.00302 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47109 * 5.00187 * 3 2 1 34 34 H 1.08999 * 109.46728 * 244.99781 * 3 2 1 35 35 H 1.08998 * 109.47133 * 210.00269 * 6 5 4 36 36 H 1.08997 * 109.46439 * 329.99665 * 6 5 4 37 37 H 1.08998 * 109.47591 * 300.00272 * 7 6 5 38 38 H 1.09003 * 109.47131 * 60.00546 * 7 6 5 39 39 H 0.97003 * 120.00335 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.48897 * 303.15666 * 20 19 18 41 41 H 1.09004 * 109.49086 * 63.21964 * 20 19 18 42 42 H 1.08997 * 109.49080 * 181.63156 * 21 20 19 43 43 H 1.09004 * 109.50590 * 61.57605 * 21 20 19 44 44 H 1.09003 * 109.47237 * 288.65273 * 23 22 21 45 45 H 1.09001 * 109.47070 * 48.65684 * 23 22 21 46 46 H 1.09000 * 109.47285 * 168.65310 * 23 22 21 47 47 H 1.09005 * 109.47060 * 299.64114 * 26 24 22 48 48 H 1.08998 * 109.46857 * 63.11329 * 27 26 24 49 49 H 1.08997 * 109.47677 * 183.11633 * 27 26 24 50 50 H 1.09002 * 109.46767 * 303.11514 * 27 26 24 51 51 H 1.09008 * 109.46914 * 59.99626 * 28 26 24 52 52 H 1.09000 * 109.47487 * 179.97438 * 28 26 24 53 53 H 1.09005 * 109.46972 * 300.00151 * 28 26 24 54 54 H 1.09004 * 109.48672 * 296.78172 * 29 19 18 55 55 H 1.08997 * 109.48911 * 56.84442 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7810 1.8886 2.3620 6 6 1.5323 2.5992 2.8171 7 6 0.5699 1.5884 3.4438 8 6 -0.6785 2.2991 3.8994 9 1 -0.7758 3.3651 3.7560 10 6 -1.6967 1.5883 4.4984 11 7 -1.5785 0.2901 4.6727 12 14 -3.2445 2.4692 5.0626 13 1 -4.2375 2.4813 3.9585 14 1 -3.8171 1.7614 6.2357 15 1 -2.9091 3.8652 5.4419 16 7 3.8568 1.6883 3.0693 17 7 4.7315 1.0560 2.3716 18 6 4.2545 0.8117 1.1738 19 7 4.9080 0.1508 0.1459 20 6 5.7364 1.0800 -0.6350 21 6 6.3766 0.3289 -1.8048 22 7 7.1844 -0.7836 -1.2859 23 6 7.8771 -1.4842 -2.3755 24 6 6.3560 -1.7128 -0.5051 25 1 5.5747 -2.1273 -1.1421 26 6 7.2304 -2.8468 0.0337 27 6 8.3313 -2.2640 0.9221 28 6 6.3692 -3.8093 0.8541 29 6 5.7159 -0.9617 0.6648 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 1.7942 3.3574 3.5552 36 1 1.0531 3.0753 1.9617 37 1 0.3080 0.8303 2.7057 38 1 1.0492 1.1124 4.2992 39 1 -2.2947 -0.2099 5.0944 40 1 5.1135 1.8879 -1.0188 41 1 6.5177 1.4942 0.0024 42 1 7.0145 1.0096 -2.3686 43 1 5.5957 -0.0620 -2.4573 44 1 7.1531 -2.0501 -2.9618 45 1 8.3748 -0.7567 -3.0167 46 1 8.6174 -2.1657 -1.9566 47 1 7.6826 -3.3844 -0.7997 48 1 7.8804 -1.7739 1.7850 49 1 8.9871 -3.0658 1.2613 50 1 8.9106 -1.5370 0.3529 51 1 5.5848 -4.2246 0.2212 52 1 6.9921 -4.6174 1.2376 53 1 5.9169 -3.2717 1.6876 54 1 6.4969 -0.5707 1.3169 55 1 5.0779 -1.6424 1.2285 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121625321.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:43 Heat of formation + Delta-G solvation = 89.657395 kcal Electronic energy + Delta-G solvation = -32324.293245 eV Core-core repulsion = 28397.460147 eV Total energy + Delta-G solvation = -3926.833098 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.04733 -40.94640 -37.43090 -37.24131 -35.91548 -35.59960 -33.90123 -33.41707 -31.08656 -30.48511 -28.82996 -28.00959 -27.67683 -27.04703 -25.41777 -24.86357 -23.75532 -22.79882 -21.82431 -21.50466 -20.80675 -19.76933 -18.70208 -18.24790 -17.63162 -17.41858 -16.57947 -16.39466 -16.30733 -16.18274 -15.76866 -15.60077 -15.34827 -15.02662 -14.91056 -14.61930 -14.56840 -14.25470 -14.15933 -13.68128 -13.55492 -13.49178 -13.10004 -12.96431 -12.85744 -12.83966 -12.71630 -12.55905 -12.53104 -12.47109 -12.36185 -12.11097 -12.01878 -11.82236 -11.78783 -11.56253 -11.55077 -11.28523 -11.24563 -11.08459 -10.58348 -10.44905 -10.31231 -9.61850 -9.27954 -8.17373 -6.29166 0.64686 0.96901 1.43117 1.45221 1.55368 1.56894 1.75867 2.43095 2.62405 2.85579 3.17014 3.44754 3.59357 3.67759 3.82353 3.86167 3.88674 3.97674 4.04066 4.11173 4.16773 4.23496 4.27952 4.34774 4.39340 4.47235 4.57571 4.63430 4.65879 4.68062 4.72757 4.74594 4.80844 4.81742 4.84699 4.88159 4.94544 4.98929 5.03640 5.07305 5.09437 5.17417 5.22051 5.40405 5.47523 5.49829 5.52454 5.56833 5.58796 5.63426 5.67971 5.81754 6.05556 6.08413 6.18189 6.21831 6.86372 7.40406 7.69787 8.94369 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.002567 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.816071 B =10904.850392 C =11089.634816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.190 4.190 3 C 0.144 3.856 4 N -0.459 5.459 5 C 0.204 3.796 6 C -0.017 4.017 7 C 0.045 3.955 8 C -0.536 4.536 9 H 0.071 0.929 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.963 3.037 13 H -0.268 1.268 14 H -0.289 1.289 15 H -0.262 1.262 16 N -0.334 5.334 17 N -0.349 5.349 18 C 0.343 3.657 19 N -0.453 5.453 20 C 0.063 3.937 21 C 0.067 3.933 22 N -0.547 5.547 23 C 0.025 3.975 24 C 0.104 3.896 25 H 0.049 0.951 26 C -0.081 4.081 27 C -0.138 4.138 28 C -0.151 4.151 29 C 0.080 3.920 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.004 0.996 38 H -0.024 1.024 39 H 0.262 0.738 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.108 0.892 43 H 0.050 0.950 44 H 0.030 0.970 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.035 0.965 49 H 0.059 0.941 50 H 0.066 0.934 51 H 0.058 0.942 52 H 0.069 0.931 53 H 0.039 0.961 54 H 0.051 0.949 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.334 -3.908 -20.843 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.209 4.209 3 C 0.023 3.977 4 N -0.151 5.151 5 C -0.065 4.065 6 C -0.056 4.056 7 C 0.007 3.993 8 C -0.573 4.573 9 H 0.089 0.911 10 C -0.194 4.194 11 N -0.572 5.572 12 Si 0.788 3.212 13 H -0.193 1.193 14 H -0.215 1.215 15 H -0.186 1.186 16 N -0.174 5.174 17 N -0.193 5.193 18 C -0.014 4.014 19 N -0.179 5.179 20 C -0.064 4.064 21 C -0.061 4.061 22 N -0.272 5.272 23 C -0.123 4.123 24 C -0.005 4.005 25 H 0.067 0.933 26 C -0.101 4.101 27 C -0.195 4.195 28 C -0.209 4.209 29 C -0.047 4.047 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.143 0.857 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.023 0.977 38 H -0.006 1.006 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.058 0.942 42 H 0.126 0.874 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.111 0.889 48 H 0.054 0.946 49 H 0.078 0.922 50 H 0.085 0.915 51 H 0.077 0.923 52 H 0.088 0.912 53 H 0.059 0.941 54 H 0.069 0.931 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 17.229 -4.002 -19.654 26.441 hybrid contribution -1.938 -0.137 -0.029 1.943 sum 15.291 -4.138 -19.682 25.265 Atomic orbital electron populations 1.24060 0.95601 1.03149 0.95355 1.22841 0.96102 0.97643 1.04284 1.21149 0.91537 0.97893 0.87113 1.46458 1.12635 1.42783 1.13241 1.25395 0.98988 0.99870 0.82198 1.20183 0.86828 0.97360 1.01257 1.18820 0.92678 0.93730 0.94076 1.21553 1.01440 0.95186 1.39170 0.91097 1.25916 1.02155 0.95437 0.95849 1.70125 1.34355 1.08208 1.44484 0.85477 0.79063 0.78829 0.77863 1.19348 1.21513 1.18605 1.73935 1.00313 1.16991 1.26146 1.74415 1.24434 1.17298 1.03103 1.22536 0.85576 0.99819 0.93448 1.59053 1.31212 1.09730 1.17856 1.22378 0.94770 0.94222 0.94989 1.22167 0.96137 0.93535 0.94233 1.62137 1.29735 1.10698 1.24595 1.22442 0.98399 0.99029 0.92391 1.21619 0.93656 0.92009 0.93222 0.93332 1.21132 0.95668 0.94288 0.98968 1.21752 0.98011 1.00823 0.98948 1.21912 1.00010 0.99247 0.99756 1.22234 0.94865 0.90525 0.97075 0.87679 0.87385 0.87770 0.87175 0.85716 0.89485 0.88477 0.97739 1.00559 0.92935 0.89278 0.94166 0.87373 0.93159 0.95093 0.90115 0.90383 0.88928 0.94618 0.92211 0.91521 0.92329 0.91216 0.94143 0.93097 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 14.09 67.78 0.95 -3.09 16 2 C -0.19 -5.31 9.85 25.65 0.25 -5.05 16 3 C 0.14 3.70 6.51 85.63 0.56 4.26 16 4 N -0.46 -15.60 2.79 -518.89 -1.45 -17.05 16 5 C 0.20 8.38 7.32 137.64 1.01 9.39 16 6 C -0.02 -0.68 5.51 29.85 0.16 -0.52 16 7 C 0.05 2.36 4.96 29.85 0.15 2.50 16 8 C -0.54 -29.08 9.11 25.60 0.23 -28.84 16 9 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 10 C 0.00 0.26 5.46 84.65 0.46 0.72 16 11 N -0.93 -56.08 13.29 21.44 0.28 -55.79 16 12 Si 0.96 43.01 29.54 68.60 2.03 45.03 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 14 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 15 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 16 N -0.33 -15.34 12.18 -49.53 -0.60 -15.94 16 17 N -0.35 -14.65 11.68 -58.00 -0.68 -15.32 16 18 C 0.34 11.84 6.73 260.11 1.75 13.59 16 19 N -0.45 -11.96 4.73 -705.53 -3.33 -15.30 16 20 C 0.06 1.33 5.55 86.31 0.48 1.81 16 21 C 0.07 0.99 5.60 86.31 0.48 1.48 16 22 N -0.55 -8.61 3.95 -896.57 -3.54 -12.15 16 23 C 0.02 0.26 8.95 127.69 1.14 1.40 16 24 C 0.10 1.93 1.76 44.92 0.08 2.01 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 C -0.08 -1.29 2.27 -10.79 -0.02 -1.32 16 27 C -0.14 -2.41 8.64 71.98 0.62 -1.78 16 28 C -0.15 -2.61 8.83 71.98 0.64 -1.97 16 29 C 0.08 2.08 3.86 86.31 0.33 2.41 16 30 H 0.10 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.11 2.93 7.84 -2.91 -0.02 2.91 16 32 H 0.10 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.11 2.60 6.75 -2.39 -0.02 2.58 16 34 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.10 3.39 7.18 -2.39 -0.02 3.37 16 37 H 0.00 0.23 7.91 -2.39 -0.02 0.21 16 38 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 39 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.09 1.66 8.13 -2.39 -0.02 1.65 16 41 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.11 1.14 8.06 -2.39 -0.02 1.13 16 43 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.03 0.31 8.11 -2.39 -0.02 0.29 16 45 H 0.08 0.65 8.00 -2.39 -0.02 0.64 16 46 H 0.08 0.75 6.71 -2.39 -0.02 0.74 16 47 H 0.09 1.15 6.55 -2.38 -0.02 1.14 16 48 H 0.03 0.78 6.57 -2.39 -0.02 0.76 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.07 1.17 7.50 -2.39 -0.02 1.15 16 51 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 53 H 0.04 0.86 6.46 -2.38 -0.02 0.85 16 54 H 0.05 1.52 6.27 -2.38 -0.01 1.50 16 55 H 0.06 1.90 6.51 -2.39 -0.02 1.88 16 Total: -1.00 -71.50 428.45 2.83 -68.66 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.84 Total: 20.87 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 9.28 Total: -3.02 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -9.32 Total: -131.55 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -71.50 2.83 -68.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121625321.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.321 kcal (2) G-P(sol) polarization free energy of solvation -71.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds