Wall clock time and date at job start Wed Apr 1 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46679 * 234.07527 * 3 2 1 5 5 C 1.36887 * 120.00337 * 263.29164 * 4 3 2 6 6 H 1.07993 * 119.99987 * 214.62380 * 5 4 3 7 7 C 1.39047 * 119.99368 * 34.62564 * 5 4 3 8 8 N 1.31368 * 120.00097 * 5.49011 * 7 5 4 9 9 Si 1.86796 * 119.99507 * 185.48825 * 7 5 4 10 10 H 1.48504 * 109.47231 * 59.99921 * 9 7 5 11 11 H 1.48499 * 109.47101 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47142 * 299.99919 * 9 7 5 13 13 C 1.34777 * 119.99455 * 83.30355 * 4 3 2 14 14 O 1.21588 * 120.00368 * 5.34791 * 13 4 3 15 15 C 1.47767 * 119.99656 * 185.35402 * 13 4 3 16 16 C 1.39944 * 125.70365 * 175.25560 * 15 13 4 17 17 C 1.38584 * 107.59192 * 180.02562 * 16 15 13 18 18 N 1.34113 * 132.31321 * 179.97438 * 17 16 15 19 19 C 1.31130 * 120.86172 * 179.97438 * 18 17 16 20 20 C 1.40413 * 120.28203 * 0.04126 * 19 18 17 21 21 Br 1.89099 * 120.27662 * 180.02562 * 20 19 18 22 22 C 1.35539 * 119.44532 * 359.97438 * 20 19 18 23 23 N 1.36675 * 119.13768 * 0.02562 * 22 20 19 24 24 N 1.32441 * 125.70124 * 355.30485 * 15 13 4 25 25 H 4.40637 * 5.51534 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46558 * 114.08026 * 3 2 1 27 27 H 1.08998 * 109.46721 * 354.07717 * 3 2 1 28 28 H 0.96995 * 119.99280 * 179.97438 * 8 7 5 29 29 H 1.08005 * 126.20631 * 0.07885 * 16 15 13 30 30 H 1.07999 * 119.85894 * 180.02562 * 19 18 17 31 31 H 1.07995 * 120.43356 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8113 1.1185 5 6 3.4920 2.1164 0.9130 6 1 4.3106 2.5460 1.4712 7 6 2.8016 2.8888 -0.0144 8 7 1.7394 2.4015 -0.6145 9 14 3.3846 4.6195 -0.4070 10 1 4.7682 4.5660 -0.9436 11 1 2.4846 5.2272 -1.4199 12 1 3.3647 5.4410 0.8299 13 6 3.2303 0.2719 2.3498 14 8 3.0059 -0.9118 2.5144 15 6 3.6086 1.1190 3.4999 16 6 3.6533 0.7084 4.8370 17 6 4.0523 1.7969 5.5963 18 7 4.2545 1.9539 6.9128 19 6 4.6402 3.1081 7.4012 20 6 4.8478 4.2040 6.5483 21 35 5.4047 5.8682 7.2526 22 6 4.6467 4.0588 5.2158 23 7 4.2448 2.8454 4.7318 24 7 3.9613 2.3941 3.4377 25 1 -1.0502 0.0000 -0.0003 26 1 3.0091 0.4201 -0.9383 27 1 3.0097 -1.0214 0.1060 28 1 1.2577 2.9405 -1.2612 29 1 3.4200 -0.2781 5.2096 30 1 4.7986 3.2163 8.4640 31 1 4.8020 4.8909 4.5452 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128396282.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:41 Heat of formation + Delta-G solvation = 171.402760 kcal Electronic energy + Delta-G solvation = -21523.340843 eV Core-core repulsion = 18049.449834 eV Total energy + Delta-G solvation = -3473.891009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 347.996 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.04249 -38.94776 -37.47985 -35.24139 -34.10513 -32.37600 -31.99077 -31.43359 -29.77062 -28.53887 -26.84545 -25.26591 -24.55315 -23.18812 -21.80719 -19.42830 -18.50838 -17.65064 -17.46056 -16.73092 -16.25107 -15.88809 -15.12387 -14.62800 -14.36134 -14.29716 -14.11739 -13.45622 -13.07892 -12.91606 -12.81116 -12.24754 -12.08325 -11.81629 -11.70151 -11.28666 -11.19348 -10.88660 -10.59834 -10.51104 -10.43111 -9.72256 -9.44748 -9.33445 -9.10506 -8.85107 -8.76565 -7.95939 -7.73008 -6.50276 -4.20071 0.45535 0.80440 1.06373 2.32926 2.35060 3.07311 3.10575 3.12052 3.37777 3.64240 3.92077 4.01823 4.18204 4.21486 4.22909 4.29742 4.73422 4.89717 4.95954 5.24241 5.46450 5.63524 5.72751 6.02225 6.16287 6.41940 6.51501 6.65226 6.73477 7.10431 7.33476 7.53975 7.61746 7.67115 8.23132 8.85004 8.96787 9.17484 9.59167 10.44561 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.003650 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.341027 B = 7670.241886 C = 9171.153473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.101 4.101 3 C 0.243 3.757 4 N -0.408 5.408 5 C -0.324 4.324 6 H 0.120 0.880 7 C 0.044 3.956 8 N -0.841 5.841 9 Si 0.927 3.073 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.520 3.480 14 O -0.586 6.586 15 C 0.113 3.887 16 C -0.196 4.196 17 C 0.224 3.776 18 N -0.446 5.446 19 C 0.194 3.806 20 C -0.226 4.226 21 Br -0.010 7.010 22 C 0.216 3.784 23 N -0.325 5.325 24 N -0.230 5.230 25 H 0.197 0.803 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.275 0.725 29 H 0.168 0.832 30 H 0.181 0.819 31 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.573 8.402 12.008 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.103 4.103 3 C 0.121 3.879 4 N -0.124 5.124 5 C -0.454 4.454 6 H 0.137 0.863 7 C -0.166 4.166 8 N -0.475 5.475 9 Si 0.752 3.248 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.307 3.693 14 O -0.471 6.471 15 C -0.048 4.048 16 C -0.226 4.226 17 C 0.003 3.997 18 N -0.157 5.157 19 C 0.005 3.995 20 C -0.312 4.312 21 Br 0.073 6.927 22 C 0.077 3.923 23 N -0.097 5.097 24 N -0.057 5.057 25 H 0.214 0.786 26 H 0.119 0.881 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.186 0.814 30 H 0.197 0.803 31 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.469 8.458 11.626 15.765 hybrid contribution -0.274 1.016 -0.347 1.108 sum 6.195 9.474 11.279 15.980 Atomic orbital electron populations 1.24139 0.95259 1.06266 1.02544 1.22827 0.94090 0.95226 0.98173 1.18109 0.84622 0.94224 0.90961 1.43592 1.52687 1.11554 1.04569 1.20117 1.15994 0.85522 1.23744 0.86324 1.25624 0.94265 0.99951 0.96711 1.69948 1.15173 1.37515 1.24889 0.85995 0.78735 0.81570 0.78470 1.19490 1.20781 1.19532 1.17084 0.84438 0.86515 0.81231 1.90680 1.57523 1.15134 1.83739 1.22457 0.96020 0.91169 0.95143 1.21017 1.12529 0.98946 0.90146 1.20509 1.03148 0.89773 0.86317 1.68235 1.14334 1.23508 1.09604 1.23206 0.90332 0.85622 1.00346 1.22042 1.17722 0.96742 0.94739 1.96745 1.89482 1.21644 1.84855 1.21883 0.88996 0.87627 0.93779 1.47994 1.43883 1.08157 1.09635 1.79244 1.24470 1.12354 0.89604 0.78576 0.88073 0.90782 0.91415 0.81406 0.80252 0.80005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.88 19.16 29.55 0.57 -5.32 16 2 C -0.10 -2.44 11.05 -37.12 -0.41 -2.85 16 3 C 0.24 5.68 5.10 -6.83 -0.03 5.64 16 4 N -0.41 -10.17 2.56 -119.04 -0.30 -10.48 16 5 C -0.32 -7.98 8.11 -14.99 -0.12 -8.10 16 6 H 0.12 2.89 5.67 -52.49 -0.30 2.59 16 7 C 0.04 1.05 5.16 -17.45 -0.09 0.96 16 8 N -0.84 -21.02 9.32 55.50 0.52 -20.50 16 9 Si 0.93 18.93 29.56 -169.99 -5.02 13.91 16 10 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.52 13.00 7.56 -12.36 -0.09 12.91 16 14 O -0.59 -15.46 16.55 5.29 0.09 -15.38 16 15 C 0.11 2.57 6.81 -83.07 -0.57 2.01 16 16 C -0.20 -3.96 10.66 -38.82 -0.41 -4.37 16 17 C 0.22 4.11 7.90 -155.42 -1.23 2.88 16 18 N -0.45 -6.96 10.48 -12.20 -0.13 -7.09 16 19 C 0.19 2.29 11.05 -17.03 -0.19 2.10 16 20 C -0.23 -2.60 6.21 -39.73 -0.25 -2.85 16 21 Br -0.01 -0.09 33.72 -68.01 -2.29 -2.38 16 22 C 0.22 2.99 11.03 -16.36 -0.18 2.81 16 23 N -0.33 -5.90 3.90 -12.18 -0.05 -5.94 16 24 N -0.23 -4.97 9.33 33.22 0.31 -4.66 16 25 H 0.20 3.61 7.80 -54.08 -0.42 3.19 16 26 H 0.10 2.32 7.17 -51.93 -0.37 1.94 16 27 H 0.07 1.63 7.56 -51.93 -0.39 1.24 16 28 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.17 3.18 8.06 -52.48 -0.42 2.76 16 30 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.18 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -29.73 307.20 -7.15 -36.88 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -1.89 Total: 5.19 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -3.01 Total: 5.82 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.35 Total: -48.67 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.09 Total: -15.38 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.29 Total: -2.38 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.73 -7.15 -36.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128396282.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.282 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds