Wall clock time and date at job start Wed Apr 1 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46679 * 234.07527 * 3 2 1 5 5 C 1.36887 * 120.00337 * 263.29164 * 4 3 2 6 6 H 1.07993 * 119.99987 * 214.62380 * 5 4 3 7 7 C 1.39047 * 119.99368 * 34.62564 * 5 4 3 8 8 N 1.31368 * 120.00097 * 5.49011 * 7 5 4 9 9 Si 1.86796 * 119.99507 * 185.48825 * 7 5 4 10 10 H 1.48504 * 109.47231 * 59.99921 * 9 7 5 11 11 H 1.48499 * 109.47101 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47142 * 299.99919 * 9 7 5 13 13 C 1.34777 * 119.99455 * 83.30355 * 4 3 2 14 14 O 1.21588 * 120.00368 * 5.34791 * 13 4 3 15 15 C 1.47767 * 119.99656 * 185.35402 * 13 4 3 16 16 C 1.39944 * 125.70365 * 175.25560 * 15 13 4 17 17 C 1.38584 * 107.59192 * 180.02562 * 16 15 13 18 18 N 1.34113 * 132.31321 * 179.97438 * 17 16 15 19 19 C 1.31130 * 120.86172 * 179.97438 * 18 17 16 20 20 C 1.40413 * 120.28203 * 0.04126 * 19 18 17 21 21 Br 1.89099 * 120.27662 * 180.02562 * 20 19 18 22 22 C 1.35539 * 119.44532 * 359.97438 * 20 19 18 23 23 N 1.36675 * 119.13768 * 0.02562 * 22 20 19 24 24 N 1.32441 * 125.70124 * 355.30485 * 15 13 4 25 25 H 4.40637 * 5.51534 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46558 * 114.08026 * 3 2 1 27 27 H 1.08998 * 109.46721 * 354.07717 * 3 2 1 28 28 H 0.96995 * 119.99280 * 179.97438 * 8 7 5 29 29 H 1.08005 * 126.20631 * 0.07885 * 16 15 13 30 30 H 1.07999 * 119.85894 * 180.02562 * 19 18 17 31 31 H 1.07995 * 120.43356 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8113 1.1185 5 6 3.4920 2.1164 0.9130 6 1 4.3106 2.5460 1.4712 7 6 2.8016 2.8888 -0.0144 8 7 1.7394 2.4015 -0.6145 9 14 3.3846 4.6195 -0.4070 10 1 4.7682 4.5660 -0.9436 11 1 2.4846 5.2272 -1.4199 12 1 3.3647 5.4410 0.8299 13 6 3.2303 0.2719 2.3498 14 8 3.0059 -0.9118 2.5144 15 6 3.6086 1.1190 3.4999 16 6 3.6533 0.7084 4.8370 17 6 4.0523 1.7969 5.5963 18 7 4.2545 1.9539 6.9128 19 6 4.6402 3.1081 7.4012 20 6 4.8478 4.2040 6.5483 21 35 5.4047 5.8682 7.2526 22 6 4.6467 4.0588 5.2158 23 7 4.2448 2.8454 4.7318 24 7 3.9613 2.3941 3.4377 25 1 -1.0502 0.0000 -0.0003 26 1 3.0091 0.4201 -0.9383 27 1 3.0097 -1.0214 0.1060 28 1 1.2577 2.9405 -1.2612 29 1 3.4200 -0.2781 5.2096 30 1 4.7986 3.2163 8.4640 31 1 4.8020 4.8909 4.5452 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128396282.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:40 Heat of formation + Delta-G solvation = 154.409924 kcal Electronic energy + Delta-G solvation = -21524.077708 eV Core-core repulsion = 18049.449834 eV Total energy + Delta-G solvation = -3474.627873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 347.996 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.41637 -40.68768 -38.89832 -37.11378 -35.34413 -33.89569 -33.64148 -33.07907 -31.05215 -29.86310 -28.57482 -27.02475 -25.88346 -24.62928 -23.29167 -21.16395 -20.00478 -19.24029 -18.95039 -18.35723 -17.58734 -17.27372 -16.68796 -16.43334 -15.98526 -15.89667 -15.51118 -14.96197 -14.51206 -14.45883 -14.11367 -13.89979 -13.77570 -13.45189 -13.00608 -12.94381 -12.81947 -12.20051 -12.12626 -11.68466 -11.64772 -11.27912 -11.22261 -10.98014 -10.68962 -10.57629 -10.38342 -9.82009 -9.11827 -8.30414 -6.08775 -0.73979 -0.43358 0.03842 0.72952 1.04737 1.43512 1.47538 1.53601 1.91710 2.12446 2.30006 2.41318 2.45877 2.60746 2.84612 3.09771 3.15161 3.22382 3.71128 3.91171 4.02228 4.14142 4.30373 4.51629 4.74235 4.82291 4.83134 5.09775 5.16840 5.37713 5.51100 5.70589 6.15656 6.36207 6.41178 7.00422 7.16704 7.31966 7.73194 8.64176 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.003650 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.341027 B = 7670.241886 C = 9171.153473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.144 4.144 3 C 0.243 3.757 4 N -0.417 5.417 5 C -0.341 4.341 6 H 0.119 0.881 7 C 0.006 3.994 8 N -0.866 5.866 9 Si 0.988 3.012 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.509 3.491 14 O -0.614 6.614 15 C 0.091 3.909 16 C -0.227 4.227 17 C 0.240 3.760 18 N -0.467 5.467 19 C 0.215 3.785 20 C -0.202 4.202 21 Br 0.033 6.967 22 C 0.194 3.806 23 N -0.325 5.325 24 N -0.255 5.255 25 H 0.232 0.768 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.274 0.726 29 H 0.167 0.833 30 H 0.229 0.771 31 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 11.354 14.418 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.145 4.145 3 C 0.121 3.879 4 N -0.132 5.132 5 C -0.470 4.470 6 H 0.136 0.864 7 C -0.200 4.200 8 N -0.501 5.501 9 Si 0.811 3.189 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.298 3.702 14 O -0.501 6.501 15 C -0.069 4.069 16 C -0.258 4.258 17 C 0.015 3.985 18 N -0.179 5.179 19 C 0.029 3.971 20 C -0.288 4.288 21 Br 0.116 6.884 22 C 0.057 3.943 23 N -0.098 5.098 24 N -0.083 5.083 25 H 0.249 0.751 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.185 0.815 30 H 0.245 0.755 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 7.294 11.451 14.036 19.528 hybrid contribution -0.416 0.322 -0.727 0.897 sum 6.879 11.772 13.309 19.054 Atomic orbital electron populations 1.25021 0.96262 1.04709 1.00947 1.23220 0.94895 0.96719 0.99708 1.18087 0.84926 0.94202 0.90650 1.43769 1.52653 1.11947 1.04832 1.20282 1.16582 0.85708 1.24467 0.86378 1.26376 0.94207 1.03194 0.96209 1.70076 1.16100 1.38558 1.25347 0.85070 0.78530 0.77177 0.78155 1.18592 1.20686 1.19168 1.17466 0.84218 0.86585 0.81977 1.90619 1.58771 1.16257 1.84441 1.22104 0.97922 0.91777 0.95105 1.20976 1.15178 0.99949 0.89735 1.20525 1.01423 0.89157 0.87350 1.68383 1.16358 1.25416 1.07696 1.24141 0.86437 0.84172 1.02392 1.22401 1.14251 0.98384 0.93805 1.96842 1.88847 1.18774 1.83959 1.22515 0.89596 0.86901 0.95283 1.47983 1.43673 1.09483 1.08625 1.79021 1.25696 1.11902 0.91635 0.75111 0.88368 0.90557 0.91592 0.81536 0.75493 0.77830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.28 19.16 74.32 1.42 -9.86 16 2 C -0.14 -7.16 11.05 31.13 0.34 -6.81 16 3 C 0.24 11.98 5.10 84.58 0.43 12.41 16 4 N -0.42 -21.79 2.56 -648.78 -1.66 -23.45 16 5 C -0.34 -17.37 8.11 84.10 0.68 -16.68 16 6 H 0.12 5.92 5.67 -2.91 -0.02 5.90 16 7 C 0.01 0.30 5.16 84.96 0.44 0.74 16 8 N -0.87 -44.17 9.32 21.68 0.20 -43.97 16 9 Si 0.99 38.78 29.56 68.60 2.03 40.81 16 10 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 11 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 12 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 13 C 0.51 26.91 7.56 86.76 0.66 27.57 16 14 O -0.61 -34.32 16.55 -3.99 -0.07 -34.39 16 15 C 0.09 4.30 6.81 41.99 0.29 4.59 16 16 C -0.23 -9.54 10.66 22.77 0.24 -9.30 16 17 C 0.24 8.66 7.90 133.00 1.05 9.72 16 18 N -0.47 -13.46 10.48 -192.52 -2.02 -15.48 16 19 C 0.22 4.16 11.05 85.33 0.94 5.10 16 20 C -0.20 -3.84 6.21 22.18 0.14 -3.70 16 21 Br 0.03 0.43 33.72 -20.37 -0.69 -0.26 16 22 C 0.19 4.85 11.03 83.31 0.92 5.77 16 23 N -0.33 -11.55 3.90 -192.44 -0.75 -12.30 16 24 N -0.25 -11.23 9.33 -48.81 -0.46 -11.69 16 25 H 0.23 8.21 7.80 -4.41 -0.03 8.18 16 26 H 0.10 4.76 7.17 -2.39 -0.02 4.74 16 27 H 0.08 3.60 7.56 -2.39 -0.02 3.58 16 28 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 29 H 0.17 6.73 8.06 -2.91 -0.02 6.70 16 30 H 0.23 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.20 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -67.45 307.20 5.34 -62.11 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.19 Total: 19.08 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 7.55 Total: 19.53 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -4.68 Total: -106.89 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.07 Total: -34.39 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 35 Polarization: 0.43 SS G_CDS: -0.69 Total: -0.26 kcal Total: -67.45 5.34 -62.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128396282.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.522 kcal (2) G-P(sol) polarization free energy of solvation -67.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds