Wall clock time and date at job start Wed Apr 1 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99777 * 2 1 4 4 N 1.46506 * 109.46989 * 124.72651 * 3 2 1 5 5 C 1.46496 * 119.99899 * 94.48633 * 4 3 2 6 6 C 1.50706 * 109.46961 * 91.11630 * 5 4 3 7 7 H 1.08000 * 119.99864 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99795 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00082 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99660 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47388 * 59.99923 * 10 8 6 12 12 H 1.48496 * 109.46807 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47025 * 299.99672 * 10 8 6 14 14 C 1.34774 * 119.99879 * 274.48618 * 4 3 2 15 15 O 1.21637 * 120.00227 * 5.89990 * 14 4 3 16 16 C 1.47209 * 119.99943 * 185.89036 * 14 4 3 17 17 C 1.47078 * 127.20730 * 7.05701 * 16 14 4 18 18 C 1.34123 * 105.97258 * 179.97438 * 17 16 14 19 19 S 1.76202 * 125.40696 * 180.02562 * 18 17 16 20 20 N 1.65596 * 107.22089 * 90.00016 * 19 18 17 21 21 O 1.42107 * 106.40019 * 203.54202 * 19 18 17 22 22 O 1.42103 * 106.40089 * 336.45897 * 19 18 17 23 23 O 1.34280 * 109.18103 * 359.97438 * 18 17 16 24 24 C 1.33687 * 110.91513 * 359.76470 * 23 18 17 25 25 Cl 1.73601 * 125.82936 * 180.24254 * 24 23 18 26 26 H 1.07995 * 119.99949 * 5.04658 * 1 2 3 27 27 H 1.07999 * 119.99713 * 185.04938 * 1 2 3 28 28 H 1.08001 * 120.00084 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47153 * 4.72850 * 3 2 1 30 30 H 1.09002 * 109.47186 * 244.72077 * 3 2 1 31 31 H 1.09010 * 109.47223 * 211.10940 * 5 4 3 32 32 H 1.09001 * 109.47712 * 331.11351 * 5 4 3 33 33 H 0.97001 * 119.99766 * 180.02562 * 9 8 6 34 34 H 1.08000 * 127.01222 * 359.93595 * 17 16 14 35 35 H 0.97000 * 119.99785 * 0.02562 * 20 19 18 36 36 H 0.96996 * 120.00350 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3346 1.1352 5 6 4.3826 0.9201 0.9551 6 6 5.2210 2.1197 0.5954 7 1 4.7616 3.0933 0.5092 8 6 6.5745 1.9741 0.3764 9 7 7.1339 0.7885 0.4819 10 14 7.6135 3.4608 -0.0701 11 1 7.5325 4.4667 1.0193 12 1 9.0261 3.0407 -0.2526 13 1 7.1079 4.0569 -1.3328 14 6 2.5585 1.7431 2.3453 15 8 1.3795 1.9846 2.5217 16 6 3.5152 1.8969 3.4535 17 6 4.9804 1.7900 3.3849 18 6 5.4249 2.0040 4.6321 19 16 7.1153 1.9933 5.1294 20 7 7.6839 3.5400 4.9668 21 8 7.1222 1.7074 6.5214 22 8 7.8105 1.2073 4.1711 23 8 4.3772 2.2288 5.4414 24 6 3.2281 2.1755 4.7603 25 17 1.6417 2.4145 5.4236 26 1 -0.5400 0.9316 -0.0823 27 1 -0.5399 -0.9317 0.0823 28 1 1.8500 -0.9353 -0.0004 29 1 1.3582 2.1318 0.0847 30 1 2.6252 1.4004 -0.9293 31 1 4.7540 0.4819 1.8816 32 1 4.4417 0.1823 0.1549 33 1 8.0862 0.6862 0.3282 34 1 5.5768 1.5810 2.5091 35 1 7.0961 4.2416 4.6457 36 1 8.6048 3.7445 5.1925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159447449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:17 Heat of formation + Delta-G solvation = -45.459091 kcal Electronic energy + Delta-G solvation = -27130.371664 eV Core-core repulsion = 22964.655706 eV Total energy + Delta-G solvation = -4165.715958 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.46045 -39.11119 -37.02630 -37.01113 -35.73847 -35.61183 -34.18151 -33.15426 -32.58457 -32.16066 -29.78316 -27.76938 -26.16182 -23.49693 -22.47859 -22.18474 -20.43744 -19.44644 -19.09189 -17.57584 -17.43377 -17.01478 -16.71769 -16.48131 -16.18217 -15.75025 -15.39917 -15.28105 -14.64398 -14.44041 -13.98942 -13.42692 -13.26923 -13.01968 -12.86094 -12.52199 -12.14865 -12.07652 -11.97122 -11.83663 -11.79983 -11.56363 -11.22735 -11.07976 -11.03946 -10.93321 -10.55569 -10.44494 -10.26797 -9.98436 -9.70510 -9.50890 -9.02406 -8.89742 -8.74165 -7.91701 -6.37872 -4.48557 0.32287 1.04638 1.12709 1.87090 2.51489 3.05988 3.10401 3.19565 3.21307 3.61311 3.68394 3.77881 3.83180 4.16294 4.91390 4.92485 5.04431 5.17705 5.29606 5.43464 5.49235 5.72231 5.93434 6.02094 6.10264 6.25611 6.47571 6.53169 6.77419 6.88920 6.96461 7.04888 7.06943 7.33449 7.56930 7.80088 8.10150 8.57587 8.79023 9.17392 10.65966 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.008688 B = 0.006404 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.212069 B = 4371.297440 C = 6848.597955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.150 3.850 4 N -0.581 5.581 5 C 0.216 3.784 6 C -0.560 4.560 7 H 0.067 0.933 8 C 0.067 3.933 9 N -0.865 5.865 10 Si 0.892 3.108 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.274 1.274 14 C 0.585 3.415 15 O -0.551 6.551 16 C -0.211 4.211 17 C -0.019 4.019 18 C -0.604 4.604 19 S 2.733 3.267 20 N -1.247 6.247 21 O -0.956 6.956 22 O -0.918 6.918 23 O -0.125 6.125 24 C 0.126 3.874 25 Cl 0.061 6.939 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.276 0.724 34 H 0.246 0.754 35 H 0.419 0.581 36 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 3.643 5.241 6.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.181 4.181 3 C 0.027 3.973 4 N -0.311 5.311 5 C 0.096 3.904 6 C -0.598 4.598 7 H 0.086 0.914 8 C -0.140 4.140 9 N -0.500 5.500 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.199 1.199 14 C 0.373 3.627 15 O -0.432 6.432 16 C -0.217 4.217 17 C -0.039 4.039 18 C -0.732 4.732 19 S 2.814 3.186 20 N -0.924 5.924 21 O -0.945 6.945 22 O -0.907 6.907 23 O -0.022 6.022 24 C 0.043 3.957 25 Cl 0.090 6.910 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.261 0.739 35 H 0.247 0.753 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -2.935 2.780 5.959 7.201 hybrid contribution -0.004 1.398 -0.677 1.553 sum -2.939 4.178 5.283 7.349 Atomic orbital electron populations 1.23708 0.95822 1.01386 1.01105 1.23362 0.96176 0.99238 0.99349 1.20398 0.92254 0.94911 0.89730 1.47936 1.12868 1.62917 1.07334 1.20074 0.75124 0.96199 0.98980 1.21463 0.92973 0.95050 1.50341 0.91445 1.25028 0.97795 0.96493 0.94718 1.69854 1.13045 1.21864 1.45215 0.86629 0.79540 0.82465 0.79544 1.19654 1.20557 1.19895 1.16910 0.86114 0.77619 0.82051 1.90747 1.16392 1.52934 1.83166 1.21390 0.94675 1.12869 0.92753 1.25488 0.93877 0.86294 0.98257 1.35247 1.11038 1.27625 0.99332 1.01245 0.70843 0.72619 0.73887 1.52997 1.23592 1.29396 1.86389 1.93591 1.85404 1.83043 1.32448 1.93762 1.67748 1.66575 1.62630 1.83784 1.11469 1.70370 1.36536 1.23247 0.83719 0.99439 0.89337 1.98467 1.11442 1.94480 1.86578 0.88693 0.88994 0.87539 0.90591 0.89185 0.93591 0.93742 0.91401 0.73866 0.75341 0.74807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 14.31 29.01 0.42 -2.17 16 2 C -0.16 -2.57 9.81 -36.03 -0.35 -2.92 16 3 C 0.15 2.62 5.75 -5.19 -0.03 2.59 16 4 N -0.58 -11.80 2.45 -177.78 -0.44 -12.24 16 5 C 0.22 4.78 4.62 -5.19 -0.02 4.76 16 6 C -0.56 -13.08 7.17 -34.44 -0.25 -13.33 16 7 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.07 1.60 4.73 -17.82 -0.08 1.51 16 9 N -0.87 -21.86 13.27 55.43 0.74 -21.13 16 10 Si 0.89 18.73 29.54 -169.99 -5.02 13.71 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 14 C 0.58 12.26 7.60 -12.62 -0.10 12.16 16 15 O -0.55 -11.85 15.40 5.24 0.08 -11.77 16 16 C -0.21 -4.26 6.07 -103.24 -0.63 -4.89 16 17 C -0.02 -0.39 7.99 -37.45 -0.30 -0.69 16 18 C -0.60 -10.87 7.29 29.28 0.21 -10.66 16 19 S 2.73 43.25 6.43 -107.50 -0.69 42.56 16 20 N -1.25 -14.12 9.55 60.35 0.58 -13.54 16 21 O -0.96 -16.72 18.02 -57.28 -1.03 -17.75 16 22 O -0.92 -17.63 17.81 -57.17 -1.02 -18.65 16 23 O -0.12 -2.22 10.53 7.39 0.08 -2.15 16 24 C 0.13 2.31 7.99 30.16 0.24 2.55 16 25 Cl 0.06 0.97 27.94 -51.86 -1.45 -0.48 16 26 H 0.09 1.30 7.86 -52.49 -0.41 0.89 16 27 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.08 1.31 7.31 -51.93 -0.38 0.93 16 30 H 0.09 1.51 8.04 -51.93 -0.42 1.09 16 31 H 0.05 1.07 4.82 -51.92 -0.25 0.82 16 32 H 0.04 1.02 8.06 -51.93 -0.42 0.60 16 33 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.25 5.45 3.11 -52.49 -0.16 5.29 16 35 H 0.42 4.04 8.92 -34.46 -0.31 3.74 16 36 H 0.42 3.59 8.96 -34.47 -0.31 3.28 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -30.08 344.92 -6.92 -36.99 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -3.05 Total: 10.32 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.89 Total: -11.07 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.88 Total: -46.91 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -1.89 Total: -50.32 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Atomic # 16 Polarization: 43.25 SS G_CDS: -0.69 Total: 42.56 kcal Atomic # 17 Polarization: 0.97 SS G_CDS: -1.45 Total: -0.48 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.08 -6.92 -36.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159447449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.465 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds