Wall clock time and date at job start Wed Apr 1 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99777 * 2 1 4 4 N 1.46506 * 109.46989 * 124.72651 * 3 2 1 5 5 C 1.46496 * 119.99899 * 94.48633 * 4 3 2 6 6 C 1.50706 * 109.46961 * 91.11630 * 5 4 3 7 7 H 1.08000 * 119.99864 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99795 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00082 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99660 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47388 * 59.99923 * 10 8 6 12 12 H 1.48496 * 109.46807 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47025 * 299.99672 * 10 8 6 14 14 C 1.34774 * 119.99879 * 274.48618 * 4 3 2 15 15 O 1.21637 * 120.00227 * 5.89990 * 14 4 3 16 16 C 1.47209 * 119.99943 * 185.89036 * 14 4 3 17 17 C 1.47078 * 127.20730 * 7.05701 * 16 14 4 18 18 C 1.34123 * 105.97258 * 179.97438 * 17 16 14 19 19 S 1.76202 * 125.40696 * 180.02562 * 18 17 16 20 20 N 1.65596 * 107.22089 * 90.00016 * 19 18 17 21 21 O 1.42107 * 106.40019 * 203.54202 * 19 18 17 22 22 O 1.42103 * 106.40089 * 336.45897 * 19 18 17 23 23 O 1.34280 * 109.18103 * 359.97438 * 18 17 16 24 24 C 1.33687 * 110.91513 * 359.76470 * 23 18 17 25 25 Cl 1.73601 * 125.82936 * 180.24254 * 24 23 18 26 26 H 1.07995 * 119.99949 * 5.04658 * 1 2 3 27 27 H 1.07999 * 119.99713 * 185.04938 * 1 2 3 28 28 H 1.08001 * 120.00084 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47153 * 4.72850 * 3 2 1 30 30 H 1.09002 * 109.47186 * 244.72077 * 3 2 1 31 31 H 1.09010 * 109.47223 * 211.10940 * 5 4 3 32 32 H 1.09001 * 109.47712 * 331.11351 * 5 4 3 33 33 H 0.97001 * 119.99766 * 180.02562 * 9 8 6 34 34 H 1.08000 * 127.01222 * 359.93595 * 17 16 14 35 35 H 0.97000 * 119.99785 * 0.02562 * 20 19 18 36 36 H 0.96996 * 120.00350 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3346 1.1352 5 6 4.3826 0.9201 0.9551 6 6 5.2210 2.1197 0.5954 7 1 4.7616 3.0933 0.5092 8 6 6.5745 1.9741 0.3764 9 7 7.1339 0.7885 0.4819 10 14 7.6135 3.4608 -0.0701 11 1 7.5325 4.4667 1.0193 12 1 9.0261 3.0407 -0.2526 13 1 7.1079 4.0569 -1.3328 14 6 2.5585 1.7431 2.3453 15 8 1.3795 1.9846 2.5217 16 6 3.5152 1.8969 3.4535 17 6 4.9804 1.7900 3.3849 18 6 5.4249 2.0040 4.6321 19 16 7.1153 1.9933 5.1294 20 7 7.6839 3.5400 4.9668 21 8 7.1222 1.7074 6.5214 22 8 7.8105 1.2073 4.1711 23 8 4.3772 2.2288 5.4414 24 6 3.2281 2.1755 4.7603 25 17 1.6417 2.4145 5.4236 26 1 -0.5400 0.9316 -0.0823 27 1 -0.5399 -0.9317 0.0823 28 1 1.8500 -0.9353 -0.0004 29 1 1.3582 2.1318 0.0847 30 1 2.6252 1.4004 -0.9293 31 1 4.7540 0.4819 1.8816 32 1 4.4417 0.1823 0.1549 33 1 8.0862 0.6862 0.3282 34 1 5.5768 1.5810 2.5091 35 1 7.0961 4.2416 4.6457 36 1 8.6048 3.7445 5.1925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159447449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:17 Heat of formation + Delta-G solvation = -67.886969 kcal Electronic energy + Delta-G solvation = -27131.344210 eV Core-core repulsion = 22964.655706 eV Total energy + Delta-G solvation = -4166.688504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.94754 -40.70392 -38.40639 -38.39636 -37.21779 -37.13140 -35.67085 -34.28210 -34.19981 -33.61185 -31.27280 -29.48848 -27.61902 -25.23008 -24.04729 -23.62549 -21.87750 -20.72980 -20.37032 -19.07862 -18.74924 -18.49260 -18.34159 -17.97596 -17.64062 -17.21924 -16.72258 -16.69220 -16.28714 -15.97187 -15.36073 -15.05294 -14.71930 -14.59073 -14.28330 -14.19683 -13.48885 -13.39616 -13.37442 -13.25666 -13.24099 -13.08621 -12.80520 -12.71150 -12.43781 -12.27079 -12.23848 -11.93871 -11.73418 -11.47717 -11.26300 -11.09889 -10.57823 -10.37082 -10.26702 -9.54448 -8.20429 -6.36682 -0.99258 -0.41336 -0.30151 0.31886 1.27758 1.44886 1.48807 1.56727 1.75528 2.12322 2.22366 2.30906 2.42656 2.45823 3.08757 3.43926 3.52664 3.71934 3.93811 4.04326 4.16274 4.29270 4.55436 4.76918 4.79984 4.97456 5.03307 5.16262 5.18121 5.22656 5.62230 5.69327 5.73177 5.86730 5.98755 6.26092 6.43771 6.75404 7.14712 7.33505 8.82282 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.008688 B = 0.006404 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.212069 B = 4371.297440 C = 6848.597955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.148 3.852 4 N -0.583 5.583 5 C 0.228 3.772 6 C -0.557 4.557 7 H 0.062 0.938 8 C 0.032 3.968 9 N -0.895 5.895 10 Si 0.934 3.066 11 H -0.251 1.251 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.580 3.420 15 O -0.561 6.561 16 C -0.233 4.233 17 C -0.041 4.041 18 C -0.591 4.591 19 S 2.758 3.242 20 N -1.227 6.227 21 O -0.969 6.969 22 O -0.952 6.952 23 O -0.116 6.116 24 C 0.130 3.870 25 Cl 0.087 6.913 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.036 0.964 32 H 0.030 0.970 33 H 0.273 0.727 34 H 0.228 0.772 35 H 0.431 0.569 36 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 4.905 5.941 8.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.204 4.204 3 C 0.026 3.974 4 N -0.312 5.312 5 C 0.107 3.893 6 C -0.596 4.596 7 H 0.081 0.919 8 C -0.172 4.172 9 N -0.531 5.531 10 Si 0.758 3.242 11 H -0.175 1.175 12 H -0.208 1.208 13 H -0.199 1.199 14 C 0.369 3.631 15 O -0.443 6.443 16 C -0.239 4.239 17 C -0.061 4.061 18 C -0.717 4.717 19 S 2.836 3.164 20 N -0.911 5.911 21 O -0.958 6.958 22 O -0.942 6.942 23 O -0.012 6.012 24 C 0.047 3.953 25 Cl 0.116 6.884 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.244 0.756 35 H 0.261 0.739 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.438 4.062 6.653 8.520 hybrid contribution 0.055 1.012 -0.842 1.318 sum -3.384 5.074 5.811 8.424 Atomic orbital electron populations 1.23940 0.95163 1.02711 0.98038 1.23231 0.96815 0.98232 1.02162 1.20519 0.91990 0.96085 0.88816 1.47967 1.12542 1.62631 1.08056 1.19796 0.76140 0.95550 0.97782 1.21514 0.93199 0.94970 1.49872 0.91930 1.25603 0.98665 0.98403 0.94545 1.69954 1.12995 1.23550 1.46592 0.85943 0.77975 0.80397 0.79855 1.17512 1.20787 1.19857 1.17049 0.86211 0.77522 0.82316 1.90718 1.16605 1.53632 1.83361 1.21428 0.94663 1.14373 0.93478 1.25211 0.94066 0.88106 0.98718 1.35500 1.11705 1.26005 0.98489 1.00468 0.69725 0.73219 0.72948 1.52545 1.24700 1.27753 1.86119 1.93574 1.85212 1.83939 1.33083 1.93729 1.68255 1.68610 1.63556 1.83806 1.11377 1.69820 1.36229 1.23386 0.84646 0.98280 0.89028 1.98476 1.09588 1.94189 1.86118 0.88077 0.86812 0.87784 0.90394 0.89144 0.94696 0.95196 0.91735 0.75630 0.73918 0.72794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 14.31 67.78 0.97 -3.28 16 2 C -0.19 -5.76 9.81 25.65 0.25 -5.51 16 3 C 0.15 5.16 5.75 85.63 0.49 5.66 16 4 N -0.58 -23.91 2.45 -834.61 -2.05 -25.95 16 5 C 0.23 10.35 4.62 85.64 0.40 10.74 16 6 C -0.56 -26.28 7.17 25.60 0.18 -26.10 16 7 H 0.06 2.96 7.81 -2.91 -0.02 2.94 16 8 C 0.03 1.54 4.73 84.65 0.40 1.94 16 9 N -0.89 -46.02 13.27 21.45 0.28 -45.73 16 10 Si 0.93 37.59 29.54 68.60 2.03 39.62 16 11 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 12 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 13 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 14 C 0.58 24.25 7.60 86.60 0.66 24.91 16 15 O -0.56 -23.68 15.40 -4.15 -0.06 -23.75 16 16 C -0.23 -9.39 6.07 -18.97 -0.12 -9.50 16 17 C -0.04 -1.67 7.99 23.65 0.19 -1.48 16 18 C -0.59 -20.79 7.29 66.88 0.49 -20.30 16 19 S 2.76 84.25 6.43 -56.49 -0.36 83.88 16 20 N -1.23 -25.03 9.55 37.02 0.35 -24.68 16 21 O -0.97 -32.50 18.02 -127.90 -2.30 -34.80 16 22 O -0.95 -36.39 17.81 -128.00 -2.28 -38.67 16 23 O -0.12 -3.99 10.53 3.52 0.04 -3.95 16 24 C 0.13 4.64 7.99 67.45 0.54 5.17 16 25 Cl 0.09 2.62 27.94 -2.72 -0.08 2.54 16 26 H 0.10 2.56 7.86 -2.91 -0.02 2.53 16 27 H 0.11 2.52 8.06 -2.91 -0.02 2.49 16 28 H 0.10 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.08 2.66 7.31 -2.39 -0.02 2.64 16 30 H 0.09 3.08 8.04 -2.39 -0.02 3.06 16 31 H 0.04 1.69 4.82 -2.38 -0.01 1.68 16 32 H 0.03 1.43 8.06 -2.39 -0.02 1.41 16 33 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 34 H 0.23 10.27 3.11 -2.91 -0.01 10.26 16 35 H 0.43 7.18 8.92 -96.75 -0.86 6.32 16 36 H 0.44 6.31 8.96 -96.75 -0.87 5.44 16 Total: -1.00 -63.27 344.92 -0.53 -63.80 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.55 Total: 25.43 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 4.45 Total: -17.75 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -1.41 Total: -96.36 kcal Atomic # 8 Polarization: -96.55 SS G_CDS: -4.61 Total: -101.17 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Atomic # 16 Polarization: 84.25 SS G_CDS: -0.36 Total: 83.88 kcal Atomic # 17 Polarization: 2.62 SS G_CDS: -0.08 Total: 2.54 kcal Total: -63.27 -0.53 -63.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159447449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.085 kcal (2) G-P(sol) polarization free energy of solvation -63.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds