Wall clock time and date at job start Wed Apr 1 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35756 * 117.00125 * 2 1 4 4 C 1.39427 * 120.79941 * 359.97438 * 3 2 1 5 5 C 1.37960 * 119.24206 * 180.02562 * 4 3 2 6 6 Br 1.89104 * 119.55574 * 179.97438 * 5 4 3 7 7 N 1.32100 * 120.89044 * 359.97438 * 5 4 3 8 8 C 1.32497 * 121.75221 * 0.02562 * 7 5 4 9 9 N 1.39175 * 119.66926 * 180.02562 * 8 7 5 10 10 C 1.38393 * 119.99808 * 186.18262 * 9 8 7 11 11 C 1.38961 * 120.00344 * 61.61139 * 10 9 8 12 12 H 1.08000 * 120.00260 * 202.14859 * 11 10 9 13 13 C 1.40851 * 119.99837 * 22.14825 * 11 10 9 14 14 N 1.30327 * 120.00249 * 9.96071 * 13 11 10 15 15 Si 1.86807 * 119.99911 * 189.96075 * 13 11 10 16 16 H 1.48500 * 109.46884 * 90.00266 * 15 13 11 17 17 H 1.48504 * 109.46877 * 209.99877 * 15 13 11 18 18 H 1.48494 * 109.47267 * 330.00174 * 15 13 11 19 19 C 1.41144 * 119.99587 * 241.61384 * 10 9 8 20 20 C 1.43198 * 119.99756 * 185.45854 * 19 10 9 21 21 N 7.32073 * 172.09721 * 144.54532 * 2 1 3 22 22 C 1.43201 * 119.99807 * 5.44732 * 19 10 9 23 23 N 6.92104 * 144.91397 * 51.51939 * 2 1 3 24 24 C 1.38868 * 120.66012 * 359.72055 * 8 7 5 25 25 H 1.08999 * 109.47451 * 300.00569 * 1 2 3 26 26 H 1.09005 * 109.46728 * 59.99823 * 1 2 3 27 27 H 1.08995 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.37691 * 0.02562 * 4 3 2 29 29 H 0.96997 * 120.00236 * 6.17895 * 9 8 7 30 30 H 0.97001 * 120.00122 * 184.98469 * 14 13 11 31 31 H 1.08002 * 120.46705 * 180.30559 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3024 2.3894 -0.0005 5 6 1.9619 3.6011 -0.0011 6 35 0.9630 5.2068 -0.0025 7 7 3.2818 3.6549 -0.0005 8 6 4.0243 2.5575 0.0000 9 7 5.4119 2.6647 0.0010 10 6 6.1936 1.5299 -0.1275 11 6 6.1060 0.7522 -1.2757 12 1 6.4138 -0.2828 -1.2518 13 6 5.6158 1.3136 -2.4709 14 7 5.4278 2.6003 -2.5573 15 14 5.2350 0.2138 -3.9321 16 1 3.8225 -0.2380 -3.8566 17 1 5.4453 0.9729 -5.1910 18 1 6.1345 -0.9675 -3.9102 19 6 7.0798 1.1625 0.9078 20 6 7.9723 0.0572 0.7277 21 7 8.6802 -0.8199 0.5839 22 6 7.0866 1.8953 2.1381 23 7 7.0924 2.4755 3.1143 24 6 3.4318 1.3016 0.0058 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2229 2.3551 -0.0005 29 1 5.8312 3.5346 0.0918 30 1 5.0229 2.9790 -3.3533 31 1 4.0401 0.4092 0.0112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:57 Heat of formation + Delta-G solvation = 63.330846 kcal Electronic energy + Delta-G solvation = -21513.720660 eV Core-core repulsion = 18035.143301 eV Total energy + Delta-G solvation = -3478.577359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 347.996 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42170 -38.53647 -37.14399 -35.31754 -34.77004 -33.71689 -31.89083 -31.39532 -30.08420 -28.67810 -27.30187 -27.08108 -23.18698 -22.44969 -21.21157 -19.14858 -18.15986 -17.49898 -17.07852 -16.30080 -15.75751 -15.58229 -15.28147 -14.94149 -14.26685 -13.89014 -13.68432 -13.53750 -12.83318 -12.64089 -12.37611 -12.37323 -11.91569 -11.74170 -11.69356 -11.64375 -11.57029 -11.27769 -11.16392 -11.00542 -10.96112 -10.57520 -10.30184 -10.14459 -9.63791 -9.32027 -8.63438 -8.36323 -7.87328 -7.06424 -5.54442 1.33934 1.51020 1.68505 2.13594 2.66797 2.73269 2.81743 3.20055 3.35583 3.66638 3.84771 4.01941 4.10289 4.19753 4.30107 4.94537 5.08847 5.11192 5.14922 5.23805 5.38544 5.40956 5.51269 5.66471 5.88248 6.13453 6.26424 6.40542 6.44693 6.96448 7.12212 7.38901 7.54452 7.61548 7.92783 8.12966 8.60198 8.91173 9.07016 9.13169 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.004721 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.126128 B = 5930.112712 C = 6656.428357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.200 3.800 4 C -0.295 4.295 5 C 0.208 3.792 6 Br -0.025 7.025 7 N -0.538 5.538 8 C 0.479 3.521 9 N -0.631 5.631 10 C 0.378 3.622 11 C -0.374 4.374 12 H 0.114 0.886 13 C 0.070 3.930 14 N -0.712 5.712 15 Si 0.920 3.080 16 H -0.254 1.254 17 H -0.267 1.267 18 H -0.247 1.247 19 C -0.302 4.302 20 C 0.325 3.675 21 N -0.528 5.528 22 C 0.308 3.692 23 N -0.527 5.527 24 C -0.243 4.243 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.138 0.862 29 H 0.412 0.588 30 H 0.304 0.696 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.728 2.391 -4.738 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.147 3.853 4 C -0.323 4.323 5 C -0.011 4.011 6 Br 0.059 6.941 7 N -0.260 5.260 8 C 0.242 3.758 9 N -0.254 5.254 10 C 0.274 3.726 11 C -0.402 4.402 12 H 0.132 0.868 13 C -0.162 4.162 14 N -0.330 5.330 15 Si 0.741 3.259 16 H -0.178 1.178 17 H -0.191 1.191 18 H -0.170 1.170 19 C -0.320 4.320 20 C 0.017 3.983 21 N -0.210 5.210 22 C 0.000 4.000 23 N -0.209 5.209 24 C -0.269 4.269 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.155 0.845 29 H 0.250 0.750 30 H 0.116 0.884 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.399 3.212 -3.623 15.191 hybrid contribution -0.779 -0.688 -1.087 1.504 sum -15.178 2.524 -4.710 16.091 Atomic orbital electron populations 1.23090 0.78336 1.03908 1.01578 1.86088 1.21389 1.26169 1.87989 1.18776 0.91627 0.83749 0.91184 1.21476 1.00814 0.91182 1.18801 1.21742 0.90633 0.90502 0.98253 1.96689 1.68217 1.31790 1.97417 1.66741 1.04946 1.31354 1.22918 1.17452 0.84702 0.86996 0.86663 1.41283 1.00640 1.09425 1.74041 1.16686 0.84676 0.81656 0.89582 1.20357 1.28312 1.00015 0.91515 0.86769 1.26495 0.92283 0.95745 1.01672 1.69476 1.21052 1.12305 1.30203 0.85997 0.81084 0.80792 0.78076 1.17832 1.19108 1.16987 1.12923 1.16774 1.08369 0.93980 1.24636 0.90852 0.90987 0.91866 1.81084 1.15018 1.14839 1.10058 1.25155 0.91496 0.91758 0.91614 1.81060 1.13450 1.13893 1.12497 1.20913 0.92074 0.99337 1.14567 0.92445 0.92522 0.88178 0.84461 0.75029 0.88372 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.84 101.05 0.99 1.24 16 2 O -0.31 -4.37 10.51 -18.98 -0.20 -4.57 16 3 C 0.20 3.24 6.73 -38.87 -0.26 2.98 16 4 C -0.30 -4.39 8.82 -39.24 -0.35 -4.73 16 5 C 0.21 3.42 7.16 -17.54 -0.13 3.29 16 6 Br -0.03 -0.34 33.86 -68.01 -2.30 -2.64 16 7 N -0.54 -10.05 10.35 -10.87 -0.11 -10.16 16 8 C 0.48 9.11 6.36 -154.87 -0.99 8.13 16 9 N -0.63 -12.26 3.27 -9.77 -0.03 -12.29 16 10 C 0.38 7.57 4.87 -83.53 -0.41 7.16 16 11 C -0.37 -7.31 6.85 -38.33 -0.26 -7.57 16 12 H 0.11 2.24 7.16 -52.49 -0.38 1.86 16 13 C 0.07 1.29 4.92 -17.20 -0.08 1.21 16 14 N -0.71 -13.43 11.22 55.60 0.62 -12.80 16 15 Si 0.92 14.52 29.58 -169.99 -5.03 9.49 16 16 H -0.25 -4.04 7.11 56.52 0.40 -3.63 16 17 H -0.27 -4.16 7.11 56.52 0.40 -3.76 16 18 H -0.25 -3.98 7.11 56.52 0.40 -3.58 16 19 C -0.30 -6.41 5.88 -104.94 -0.62 -7.03 16 20 C 0.32 7.21 13.98 -22.46 -0.31 6.89 16 21 N -0.53 -12.22 18.54 41.85 0.78 -11.44 16 22 C 0.31 6.86 14.82 -22.49 -0.33 6.52 16 23 N -0.53 -12.36 18.53 41.82 0.78 -11.58 16 24 C -0.24 -4.43 8.69 -39.08 -0.34 -4.77 16 25 H 0.06 0.48 7.71 -51.93 -0.40 0.08 16 26 H 0.06 0.47 7.71 -51.93 -0.40 0.07 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.14 1.63 6.46 -52.49 -0.34 1.29 16 29 H 0.41 7.98 8.94 -40.82 -0.37 7.61 16 30 H 0.30 5.33 8.29 -40.82 -0.34 4.99 16 31 H 0.16 2.92 6.24 -52.49 -0.33 2.59 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -24.55 316.74 -5.57 -30.13 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -1.76 Total: 7.79 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: -3.08 Total: 13.31 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 2.03 Total: -58.28 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.20 Total: -4.57 kcal Atomic # 14 Polarization: 14.52 SS G_CDS: -5.03 Total: 9.49 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -2.30 Total: -2.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -24.55 -5.57 -30.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.460 kcal (2) G-P(sol) polarization free energy of solvation -24.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds