Wall clock time and date at job start Wed Apr 1 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35756 * 117.00125 * 2 1 4 4 C 1.39427 * 120.79941 * 359.97438 * 3 2 1 5 5 C 1.37960 * 119.24206 * 180.02562 * 4 3 2 6 6 Br 1.89104 * 119.55574 * 179.97438 * 5 4 3 7 7 N 1.32100 * 120.89044 * 359.97438 * 5 4 3 8 8 C 1.32497 * 121.75221 * 0.02562 * 7 5 4 9 9 N 1.39175 * 119.66926 * 180.02562 * 8 7 5 10 10 C 1.38393 * 119.99808 * 186.18262 * 9 8 7 11 11 C 1.38961 * 120.00344 * 61.61139 * 10 9 8 12 12 H 1.08000 * 120.00260 * 202.14859 * 11 10 9 13 13 C 1.40851 * 119.99837 * 22.14825 * 11 10 9 14 14 N 1.30327 * 120.00249 * 9.96071 * 13 11 10 15 15 Si 1.86807 * 119.99911 * 189.96075 * 13 11 10 16 16 H 1.48500 * 109.46884 * 90.00266 * 15 13 11 17 17 H 1.48504 * 109.46877 * 209.99877 * 15 13 11 18 18 H 1.48494 * 109.47267 * 330.00174 * 15 13 11 19 19 C 1.41144 * 119.99587 * 241.61384 * 10 9 8 20 20 C 1.43198 * 119.99756 * 185.45854 * 19 10 9 21 21 N 7.32073 * 172.09721 * 144.54532 * 2 1 3 22 22 C 1.43201 * 119.99807 * 5.44732 * 19 10 9 23 23 N 6.92104 * 144.91397 * 51.51939 * 2 1 3 24 24 C 1.38868 * 120.66012 * 359.72055 * 8 7 5 25 25 H 1.08999 * 109.47451 * 300.00569 * 1 2 3 26 26 H 1.09005 * 109.46728 * 59.99823 * 1 2 3 27 27 H 1.08995 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.37691 * 0.02562 * 4 3 2 29 29 H 0.96997 * 120.00236 * 6.17895 * 9 8 7 30 30 H 0.97001 * 120.00122 * 184.98469 * 14 13 11 31 31 H 1.08002 * 120.46705 * 180.30559 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3024 2.3894 -0.0005 5 6 1.9619 3.6011 -0.0011 6 35 0.9630 5.2068 -0.0025 7 7 3.2818 3.6549 -0.0005 8 6 4.0243 2.5575 0.0000 9 7 5.4119 2.6647 0.0010 10 6 6.1936 1.5299 -0.1275 11 6 6.1060 0.7522 -1.2757 12 1 6.4138 -0.2828 -1.2518 13 6 5.6158 1.3136 -2.4709 14 7 5.4278 2.6003 -2.5573 15 14 5.2350 0.2138 -3.9321 16 1 3.8225 -0.2380 -3.8566 17 1 5.4453 0.9729 -5.1910 18 1 6.1345 -0.9675 -3.9102 19 6 7.0798 1.1625 0.9078 20 6 7.9723 0.0572 0.7277 21 7 8.6802 -0.8199 0.5839 22 6 7.0866 1.8953 2.1381 23 7 7.0924 2.4755 3.1143 24 6 3.4318 1.3016 0.0058 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2229 2.3551 -0.0005 29 1 5.8312 3.5346 0.0918 30 1 5.0229 2.9790 -3.3533 31 1 4.0401 0.4092 0.0112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:56 Heat of formation + Delta-G solvation = 50.764113 kcal Electronic energy + Delta-G solvation = -21514.265594 eV Core-core repulsion = 18035.143301 eV Total energy + Delta-G solvation = -3479.122293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 347.996 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.68616 -39.78305 -38.56562 -37.00402 -36.54673 -35.18079 -33.22854 -32.68603 -31.46317 -29.92374 -28.84404 -28.07494 -24.56108 -23.70887 -22.67693 -20.71586 -19.46729 -18.99760 -18.42859 -17.75558 -16.82300 -16.77345 -16.68060 -16.21867 -15.50115 -15.16701 -15.02293 -14.78296 -14.52269 -14.37576 -13.90678 -13.53855 -13.42693 -13.36238 -13.25458 -13.07638 -12.78713 -12.73169 -12.56725 -12.31733 -12.21239 -11.96767 -11.53575 -11.43556 -10.91829 -10.64506 -9.90977 -9.83467 -9.29880 -8.52399 -7.17785 0.02447 0.28056 0.36529 0.70831 1.35464 1.49574 1.53152 2.00448 2.05663 2.10300 2.22896 2.32093 2.54501 2.69052 2.82395 3.38049 3.76697 3.86843 4.03096 4.13728 4.25639 4.44765 4.45494 4.54064 4.65456 4.65616 4.80507 5.06231 5.18268 5.38112 5.62088 5.98990 6.09422 6.29277 6.46307 6.65520 7.10983 7.22717 7.33620 7.68343 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.004721 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.126128 B = 5930.112712 C = 6656.428357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.206 3.794 4 C -0.282 4.282 5 C 0.191 3.809 6 Br 0.002 6.998 7 N -0.559 5.559 8 C 0.466 3.534 9 N -0.636 5.636 10 C 0.376 3.624 11 C -0.367 4.367 12 H 0.112 0.888 13 C 0.047 3.953 14 N -0.718 5.718 15 Si 0.972 3.028 16 H -0.252 1.252 17 H -0.259 1.259 18 H -0.252 1.252 19 C -0.317 4.317 20 C 0.331 3.669 21 N -0.551 5.551 22 C 0.316 3.684 23 N -0.555 5.555 24 C -0.264 4.264 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.171 0.829 29 H 0.407 0.593 30 H 0.312 0.688 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.141 2.230 -6.129 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.230 6.230 3 C 0.151 3.849 4 C -0.309 4.309 5 C -0.027 4.027 6 Br 0.086 6.914 7 N -0.281 5.281 8 C 0.230 3.770 9 N -0.259 5.259 10 C 0.272 3.728 11 C -0.394 4.394 12 H 0.130 0.870 13 C -0.184 4.184 14 N -0.336 5.336 15 Si 0.790 3.210 16 H -0.176 1.176 17 H -0.183 1.183 18 H -0.175 1.175 19 C -0.336 4.336 20 C 0.024 3.976 21 N -0.234 5.234 22 C 0.010 3.990 23 N -0.238 5.238 24 C -0.290 4.290 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.143 0.857 28 H 0.188 0.812 29 H 0.245 0.755 30 H 0.125 0.875 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.850 3.063 -5.003 17.842 hybrid contribution -0.247 -0.605 -0.744 0.990 sum -17.097 2.458 -5.747 18.204 Atomic orbital electron populations 1.23509 0.75554 1.06173 1.02877 1.86088 1.24218 1.25268 1.87441 1.18822 0.91141 0.84926 0.89991 1.21784 1.02325 0.90059 1.16746 1.22243 0.90268 0.92305 0.97933 1.96701 1.67009 1.30390 1.97322 1.66755 1.06113 1.31455 1.23765 1.17528 0.84429 0.87561 0.87490 1.41192 1.01011 1.08847 1.74847 1.16651 0.84700 0.82071 0.89373 1.20536 1.27139 0.99833 0.91881 0.87024 1.27035 0.91948 0.96582 1.02879 1.69483 1.20066 1.13156 1.30918 0.85241 0.80725 0.79207 0.75806 1.17559 1.18281 1.17487 1.12954 1.17731 1.08688 0.94182 1.24755 0.90581 0.90870 0.91369 1.81069 1.15919 1.15681 1.10760 1.25297 0.90853 0.91364 0.91515 1.81041 1.14592 1.14951 1.13249 1.20901 0.93305 0.98612 1.16203 0.91125 0.91122 0.85652 0.81181 0.75518 0.87542 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.84 113.37 1.12 1.31 16 2 O -0.32 -8.43 10.51 -90.81 -0.95 -9.39 16 3 C 0.21 6.32 6.73 22.73 0.15 6.47 16 4 C -0.28 -7.70 8.82 22.49 0.20 -7.50 16 5 C 0.19 5.95 7.16 84.59 0.61 6.56 16 6 Br 0.00 0.05 33.86 -20.37 -0.69 -0.64 16 7 N -0.56 -20.56 10.35 -188.30 -1.95 -22.50 16 8 C 0.47 17.72 6.36 132.91 0.85 18.57 16 9 N -0.64 -25.06 3.27 -184.82 -0.60 -25.67 16 10 C 0.38 15.29 4.87 38.99 0.19 15.48 16 11 C -0.37 -14.29 6.85 23.08 0.16 -14.13 16 12 H 0.11 4.37 7.16 -2.91 -0.02 4.35 16 13 C 0.05 1.68 4.92 85.56 0.42 2.10 16 14 N -0.72 -26.44 11.22 21.98 0.25 -26.19 16 15 Si 0.97 28.30 29.58 68.60 2.03 30.33 16 16 H -0.25 -7.23 7.11 99.48 0.71 -6.52 16 17 H -0.26 -7.22 7.11 99.48 0.71 -6.51 16 18 H -0.25 -7.52 7.11 99.48 0.71 -6.81 16 19 C -0.32 -13.72 5.88 -20.07 -0.12 -13.84 16 20 C 0.33 14.92 13.98 88.33 1.23 16.16 16 21 N -0.55 -25.77 18.54 19.01 0.35 -25.42 16 22 C 0.32 14.43 14.82 88.34 1.31 15.73 16 23 N -0.56 -26.57 18.53 19.00 0.35 -26.22 16 24 C -0.26 -9.56 8.69 22.59 0.20 -9.37 16 25 H 0.07 0.91 7.71 -2.39 -0.02 0.89 16 26 H 0.07 0.90 7.71 -2.38 -0.02 0.88 16 27 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.17 3.38 6.46 -2.91 -0.02 3.36 16 29 H 0.41 16.21 8.94 -92.71 -0.83 15.38 16 30 H 0.31 10.49 8.29 -92.71 -0.77 9.72 16 31 H 0.14 5.47 6.24 -2.91 -0.02 5.45 16 Total: -1.00 -52.20 316.74 5.50 -46.70 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.41 Total: 21.46 kcal Atomic # 6 Polarization: 31.23 SS G_CDS: 6.31 Total: 37.54 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -1.60 Total: -125.99 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.95 Total: -9.39 kcal Atomic # 14 Polarization: 28.30 SS G_CDS: 2.03 Total: 30.33 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.64 kcal Total: -52.20 5.50 -46.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.465 kcal (2) G-P(sol) polarization free energy of solvation -52.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds