Wall clock time and date at job start Wed Apr 1 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35679 * 116.99729 * 2 1 4 4 C 1.38775 * 119.63236 * 179.97438 * 3 2 1 5 5 C 1.38679 * 119.25911 * 180.26742 * 4 3 2 6 6 Br 1.89097 * 120.72994 * 179.72172 * 5 4 3 7 7 C 1.38635 * 118.54267 * 359.51390 * 5 4 3 8 8 C 1.38917 * 119.20967 * 0.48686 * 7 5 4 9 9 N 1.39155 * 119.66055 * 179.73045 * 8 7 5 10 10 C 1.38385 * 120.00032 * 353.71110 * 9 8 7 11 11 C 1.38964 * 119.99905 * 299.73784 * 10 9 8 12 12 H 1.08006 * 119.99669 * 158.78216 * 11 10 9 13 13 C 1.40846 * 120.00294 * 338.78338 * 11 10 9 14 14 N 1.30333 * 120.00049 * 350.90090 * 13 11 10 15 15 Si 1.86802 * 119.99840 * 170.89909 * 13 11 10 16 16 H 1.48498 * 109.46988 * 90.00296 * 15 13 11 17 17 H 1.48499 * 109.46976 * 209.99935 * 15 13 11 18 18 H 1.48492 * 109.47495 * 329.99932 * 15 13 11 19 19 C 1.41143 * 119.99942 * 119.74251 * 10 9 8 20 20 C 1.43196 * 120.00054 * 185.26175 * 19 10 9 21 21 N 9.23472 * 97.98742 * 355.37205 * 2 1 3 22 22 C 1.43202 * 119.99845 * 5.25900 * 19 10 9 23 23 N 7.14180 * 78.14995 * 335.54752 * 2 1 3 24 24 N 1.32312 * 119.63725 * 0.02562 * 3 2 1 25 25 H 1.08997 * 109.47690 * 300.00555 * 1 2 3 26 26 H 1.09004 * 109.46987 * 60.00582 * 1 2 3 27 27 H 1.09002 * 109.46877 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.36825 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.39936 * 180.21681 * 7 5 4 30 30 H 0.97000 * 119.99845 * 173.71575 * 9 8 7 31 31 H 0.96998 * 119.99692 * 185.05354 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4312 1.2727 0.0005 5 6 4.0527 2.5125 0.0062 6 35 5.9388 2.6478 0.0150 7 6 3.2608 3.6504 0.0008 8 6 1.8783 3.5143 0.0003 9 7 1.0746 4.6503 0.0005 10 6 1.6473 5.9031 0.1326 11 6 2.3818 6.2149 1.2703 12 1 3.0992 7.0219 1.2456 13 6 2.1909 5.4784 2.4556 14 7 1.2078 4.6271 2.5427 15 14 3.3466 5.7219 3.9029 16 1 2.8206 6.7979 4.7808 17 1 3.4460 4.4574 4.6751 18 1 4.6918 6.1039 3.4034 19 6 1.4852 6.8643 -0.8882 20 6 2.1695 8.1194 -0.8049 21 7 2.7122 9.1153 -0.7379 22 6 0.6366 6.5843 -2.0071 23 7 -0.0376 6.3627 -2.8933 24 7 1.3172 2.3140 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 4.0194 0.3670 0.0014 29 1 3.7133 4.6311 0.0014 30 1 0.1128 4.5639 -0.0918 31 1 1.0315 4.1742 3.3821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083889.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:52 Heat of formation + Delta-G solvation = 53.497278 kcal Electronic energy + Delta-G solvation = -21567.239888 eV Core-core repulsion = 18088.236114 eV Total energy + Delta-G solvation = -3479.003774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 347.996 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.69678 -39.74909 -38.28738 -36.95028 -36.54715 -35.22289 -34.11851 -32.31568 -30.95141 -30.27505 -28.84799 -27.87062 -24.64683 -23.54838 -22.80446 -20.78859 -19.22873 -18.97791 -18.57396 -17.78161 -16.95439 -16.93877 -16.63780 -16.44739 -15.40137 -14.98661 -14.75847 -14.59822 -14.36174 -14.21223 -13.89710 -13.54436 -13.40284 -13.32677 -13.28427 -13.08568 -12.82303 -12.75070 -12.62382 -12.58613 -12.36064 -12.00844 -11.56719 -11.34945 -10.86840 -10.72201 -10.24324 -9.74181 -9.25199 -8.45547 -7.16525 0.10318 0.21908 0.41434 0.72922 1.35760 1.49314 1.52411 1.98162 2.05648 2.09347 2.23816 2.29206 2.55374 2.62502 2.84902 3.39459 3.74293 3.83557 4.07328 4.17478 4.31462 4.48679 4.49430 4.58110 4.65717 4.74208 4.84574 5.09613 5.13870 5.36012 5.60920 5.93733 6.09600 6.17689 6.49534 6.66954 7.11671 7.22450 7.34596 7.66781 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.008413 B = 0.005815 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.501070 B = 4813.768305 C = 5599.522064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.359 3.641 4 C -0.234 4.234 5 C 0.017 3.983 6 Br -0.016 7.016 7 C -0.242 4.242 8 C 0.477 3.523 9 N -0.633 5.633 10 C 0.375 3.625 11 C -0.365 4.365 12 H 0.113 0.887 13 C 0.049 3.951 14 N -0.718 5.718 15 Si 0.964 3.036 16 H -0.253 1.253 17 H -0.260 1.260 18 H -0.245 1.245 19 C -0.320 4.320 20 C 0.331 3.669 21 N -0.551 5.551 22 C 0.316 3.684 23 N -0.556 5.556 24 N -0.592 5.592 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.127 0.873 28 H 0.161 0.839 29 H 0.147 0.853 30 H 0.406 0.594 31 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 -13.001 6.123 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.178 3.822 4 C -0.259 4.259 5 C -0.070 4.070 6 Br 0.070 6.930 7 C -0.268 4.268 8 C 0.240 3.760 9 N -0.256 5.256 10 C 0.270 3.730 11 C -0.392 4.392 12 H 0.131 0.869 13 C -0.182 4.182 14 N -0.336 5.336 15 Si 0.783 3.217 16 H -0.177 1.177 17 H -0.184 1.184 18 H -0.167 1.167 19 C -0.339 4.339 20 C 0.024 3.976 21 N -0.234 5.234 22 C 0.010 3.990 23 N -0.239 5.239 24 N -0.325 5.325 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.178 0.822 29 H 0.164 0.836 30 H 0.243 0.757 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.542 -12.215 4.975 14.306 hybrid contribution -0.172 0.079 0.784 0.807 sum 5.370 -12.136 5.760 14.467 Atomic orbital electron populations 1.23015 0.75940 1.04517 1.02042 1.86219 1.24215 1.23569 1.87700 1.19367 0.88806 0.83962 0.90047 1.20651 0.91834 0.98034 1.15392 1.21573 0.91712 0.94411 0.99328 1.96698 1.00214 1.98813 1.97310 1.21415 0.92407 0.99907 1.13113 1.17381 0.87175 0.84497 0.86904 1.41130 1.08668 1.01222 1.74545 1.16651 0.86460 0.80858 0.89014 1.20541 1.15643 1.10693 0.92341 0.86891 1.26990 0.96497 0.91637 1.03106 1.69491 1.21259 1.13026 1.29820 0.85330 0.79745 0.79974 0.76652 1.17738 1.18388 1.16733 1.12880 1.24437 0.95047 1.01502 1.24747 0.90690 0.90990 0.91202 1.81071 1.17180 1.13350 1.11839 1.25267 0.90916 0.91641 0.91207 1.81036 1.18069 1.10961 1.13859 1.66521 1.41223 0.97681 1.27088 0.92835 0.93043 0.85519 0.82159 0.83557 0.75717 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.38 113.37 1.18 2.05 16 2 O -0.31 -8.62 10.47 -89.97 -0.94 -9.56 16 3 C 0.36 11.42 7.48 84.75 0.63 12.06 16 4 C -0.23 -6.87 9.82 22.50 0.22 -6.65 16 5 C 0.02 0.52 6.26 22.47 0.14 0.66 16 6 Br -0.02 -0.41 33.76 -20.37 -0.69 -1.10 16 7 C -0.24 -8.43 8.37 22.53 0.19 -8.24 16 8 C 0.48 17.42 6.16 132.93 0.82 18.24 16 9 N -0.63 -23.84 3.33 -184.79 -0.62 -24.46 16 10 C 0.37 14.69 4.95 39.00 0.19 14.89 16 11 C -0.37 -13.74 6.87 23.08 0.16 -13.58 16 12 H 0.11 4.29 7.01 -2.91 -0.02 4.27 16 13 C 0.05 1.70 4.79 85.55 0.41 2.11 16 14 N -0.72 -25.33 11.01 21.98 0.24 -25.09 16 15 Si 0.96 27.59 29.58 68.60 2.03 29.62 16 16 H -0.25 -7.18 7.11 99.48 0.71 -6.47 16 17 H -0.26 -7.24 7.11 99.48 0.71 -6.54 16 18 H -0.24 -7.05 7.11 99.48 0.71 -6.34 16 19 C -0.32 -13.46 5.88 -20.07 -0.12 -13.57 16 20 C 0.33 14.53 13.91 88.33 1.23 15.76 16 21 N -0.55 -25.23 18.54 19.00 0.35 -24.87 16 22 C 0.32 14.01 14.80 88.34 1.31 15.32 16 23 N -0.56 -25.87 18.53 19.00 0.35 -25.52 16 24 N -0.59 -20.71 9.24 -306.25 -2.83 -23.54 16 25 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 26 H 0.05 1.22 8.10 -2.38 -0.02 1.20 16 27 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 29 H 0.15 5.29 6.16 -2.91 -0.02 5.27 16 30 H 0.41 15.36 8.92 -92.71 -0.83 14.54 16 31 H 0.31 10.03 8.29 -92.71 -0.77 9.26 16 Total: -1.00 -47.97 318.24 4.66 -43.31 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.40 Total: 22.17 kcal Atomic # 6 Polarization: 32.68 SS G_CDS: 6.36 Total: 39.04 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -2.50 Total: -123.48 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.94 Total: -9.56 kcal Atomic # 14 Polarization: 27.59 SS G_CDS: 2.03 Total: 29.62 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -0.69 Total: -1.10 kcal Total: -47.97 4.66 -43.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083889.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.805 kcal (2) G-P(sol) polarization free energy of solvation -47.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds