Wall clock time and date at job start Wed Apr 1 2020 04:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.46881 * 2 1 4 4 C 1.53005 * 109.47110 * 240.00367 * 2 1 3 5 5 C 1.52997 * 109.46883 * 176.68897 * 4 2 1 6 6 C 1.50700 * 109.46747 * 175.36020 * 5 4 2 7 7 H 1.08003 * 120.00388 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00031 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99426 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99941 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46841 * 179.97438 * 10 8 6 12 12 H 1.48495 * 109.47080 * 60.00231 * 10 8 6 13 13 H 1.48502 * 109.47204 * 299.99774 * 10 8 6 14 14 N 1.46900 * 109.47129 * 120.00537 * 2 1 3 15 15 C 1.47160 * 110.99821 * 296.45055 * 14 2 1 16 16 C 1.50791 * 108.92823 * 188.14067 * 15 14 2 17 17 C 1.53150 * 111.64450 * 299.66457 * 16 15 14 18 18 H 1.09001 * 111.57917 * 285.49938 * 17 16 15 19 19 C 1.54063 * 110.43472 * 50.29111 * 17 16 15 20 20 H 1.09007 * 109.73107 * 191.51645 * 19 17 16 21 21 C 1.54314 * 102.25420 * 75.22210 * 19 17 16 22 22 C 1.54632 * 102.34447 * 37.14955 * 21 19 17 23 23 H 1.08999 * 109.89588 * 97.69500 * 22 21 19 24 24 C 1.52999 * 110.03134 * 218.82342 * 22 21 19 25 25 N 1.46500 * 109.46798 * 293.43636 * 24 22 21 26 26 C 1.34429 * 126.82208 * 124.34729 * 25 24 22 27 27 N 1.30834 * 108.07727 * 179.97438 * 26 25 24 28 28 C 1.33241 * 109.82662 * 359.97438 * 27 26 25 29 29 N 1.30708 * 108.94597 * 359.75786 * 28 27 26 30 30 N 1.47589 * 107.21416 * 338.29849 * 22 21 19 31 31 C 1.46903 * 110.99969 * 234.94779 * 30 22 21 32 32 C 1.46662 * 111.00432 * 58.92383 * 14 2 1 33 33 H 1.08993 * 109.47107 * 299.99201 * 1 2 3 34 34 H 1.09003 * 109.47540 * 59.99915 * 1 2 3 35 35 H 1.09004 * 109.46938 * 179.97438 * 1 2 3 36 36 H 1.09002 * 109.46995 * 56.68666 * 4 2 1 37 37 H 1.09005 * 109.47091 * 296.69433 * 4 2 1 38 38 H 1.09007 * 109.46839 * 55.36628 * 5 4 2 39 39 H 1.08989 * 109.47405 * 295.36377 * 5 4 2 40 40 H 0.96993 * 120.00491 * 359.97438 * 9 8 6 41 41 H 1.09003 * 109.62886 * 308.42535 * 15 14 2 42 42 H 1.09007 * 109.63096 * 69.00081 * 15 14 2 43 43 H 1.09001 * 109.73530 * 178.38885 * 16 15 14 44 44 H 1.08998 * 107.70506 * 59.60103 * 16 15 14 45 45 H 1.09002 * 110.83092 * 155.35935 * 21 19 17 46 46 H 1.08993 * 110.83082 * 278.93506 * 21 19 17 47 47 H 1.09003 * 109.47230 * 53.43020 * 24 22 21 48 48 H 1.09004 * 109.47663 * 173.43351 * 24 22 21 49 49 H 1.07998 * 125.96463 * 0.02562 * 26 25 24 50 50 H 1.08000 * 125.52120 * 179.97438 * 28 27 26 51 51 H 1.09003 * 109.46617 * 174.67672 * 31 30 22 52 52 H 1.08993 * 109.46970 * 294.67951 * 31 30 22 53 53 H 1.08995 * 109.46992 * 54.67751 * 31 30 22 54 54 H 1.09004 * 109.04799 * 296.60473 * 32 14 2 55 55 H 1.08993 * 109.05073 * 55.50143 * 32 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5678 -0.6494 -1.2916 6 6 4.0763 -1.4556 -2.4589 7 1 3.3796 -1.9676 -3.1061 8 6 5.4312 -1.5396 -2.7006 9 7 6.2796 -0.9166 -1.9122 10 14 6.0615 -2.5384 -4.1479 11 1 7.5443 -2.4688 -4.1889 12 1 5.5055 -1.9868 -5.4096 13 1 5.6358 -3.9530 -3.9961 14 7 2.0197 -0.6926 1.1994 15 6 1.6185 0.0220 2.4217 16 6 2.3076 -0.6087 3.6054 17 6 1.9264 -2.0839 3.7610 18 1 0.9168 -2.1976 4.1557 19 6 2.1007 -2.8284 2.4235 20 1 1.6394 -3.8139 2.4880 21 6 3.6337 -2.9788 2.3298 22 6 4.0308 -3.2398 3.8013 23 1 4.1507 -4.3101 3.9689 24 6 5.3363 -2.5123 4.1287 25 7 6.4327 -3.1073 3.3606 26 6 7.2716 -2.4687 2.5266 27 7 8.1070 -3.3492 2.0383 28 6 7.8345 -4.5550 2.5354 29 7 6.8206 -4.4571 3.3545 30 7 2.9396 -2.7184 4.6472 31 6 3.4514 -1.7578 5.6338 32 6 1.5286 -2.0738 1.2461 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 1.6290 -0.2427 -2.1383 37 1 1.7259 -1.7646 -1.2203 38 1 3.9762 -1.0537 -0.3654 39 1 3.8798 0.3888 -1.4037 40 1 5.9523 -0.3977 -1.1610 41 1 1.9031 1.0712 2.3425 42 1 0.5397 -0.0586 2.5556 43 1 2.0417 -0.0710 4.5155 44 1 3.3826 -0.5305 3.4436 45 1 3.9021 -3.8268 1.6997 46 1 4.0915 -2.0607 1.9617 47 1 5.2402 -1.4583 3.8678 48 1 5.5467 -2.6051 5.1942 49 1 7.2587 -1.4129 2.2998 50 1 8.3674 -5.4649 2.3022 51 1 2.6167 -1.3187 6.1803 52 1 4.1127 -2.2713 6.3316 53 1 4.0045 -0.9707 5.1214 54 1 0.4415 -2.0623 1.3252 55 1 1.8117 -2.5834 0.3252 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500077.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:07 Heat of formation + Delta-G solvation = 90.537724 kcal Electronic energy + Delta-G solvation = -33641.472402 eV Core-core repulsion = 29714.677478 eV Total energy + Delta-G solvation = -3926.794924 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.07103 -41.93029 -39.38071 -36.26219 -35.29887 -34.23545 -33.69652 -32.17505 -31.58732 -30.32696 -30.03232 -27.78384 -26.68993 -26.41896 -24.68855 -23.84657 -23.16986 -22.96450 -22.91441 -21.07291 -20.59082 -19.69176 -18.78727 -18.44479 -17.58884 -17.03963 -16.81859 -16.30817 -16.06267 -15.68126 -15.67307 -15.47374 -15.22624 -15.09016 -15.02931 -14.66041 -14.53931 -14.28665 -14.04061 -13.85108 -13.62981 -13.48453 -13.44734 -13.12319 -12.89482 -12.71237 -12.69472 -12.56404 -12.37794 -12.28363 -12.07490 -12.01628 -11.91496 -11.79448 -11.54845 -11.48235 -11.31010 -11.06615 -11.00307 -10.77675 -10.58608 -10.51978 -10.44776 -9.30515 -9.05039 -8.57915 -6.27374 0.64062 1.34286 1.48499 1.56429 1.75657 2.01656 2.57427 2.83901 2.99751 3.24263 3.26882 3.45414 3.50059 3.52326 3.80552 3.82484 3.91727 4.01540 4.05753 4.13419 4.19966 4.23027 4.31257 4.33319 4.38687 4.46358 4.47722 4.51279 4.60541 4.62884 4.65173 4.69235 4.79227 4.82756 4.91851 4.92539 4.94190 5.00181 5.02641 5.10181 5.17303 5.18992 5.22587 5.27750 5.32791 5.39929 5.46886 5.53538 5.71181 5.76715 5.88506 6.02615 6.11491 6.23602 6.27136 6.34794 6.71272 7.11981 7.51497 8.82053 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.007192 B = 0.005585 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3892.240739 B = 5012.249527 C = 8169.136470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.087 3.913 3 H 0.071 0.929 4 C -0.087 4.087 5 C 0.032 3.968 6 C -0.621 4.621 7 H 0.037 0.963 8 C -0.032 4.032 9 N -0.929 5.929 10 Si 1.104 2.896 11 H -0.283 1.283 12 H -0.269 1.269 13 H -0.278 1.278 14 N -0.529 5.529 15 C 0.054 3.946 16 C -0.132 4.132 17 C 0.088 3.912 18 H 0.110 0.890 19 C -0.083 4.083 20 H 0.079 0.921 21 C -0.111 4.111 22 C 0.076 3.924 23 H 0.079 0.921 24 C 0.115 3.885 25 N -0.371 5.371 26 C 0.257 3.743 27 N -0.578 5.578 28 C 0.188 3.812 29 N -0.338 5.338 30 N -0.518 5.518 31 C -0.001 4.001 32 C 0.067 3.933 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.006 0.994 39 H -0.027 1.027 40 H 0.257 0.743 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.032 0.968 46 H 0.062 0.938 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.230 0.770 50 H 0.240 0.760 51 H 0.088 0.912 52 H 0.077 0.923 53 H 0.045 0.955 54 H 0.049 0.951 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 0.544 17.949 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 H 0.089 0.911 4 C -0.125 4.125 5 C -0.005 4.005 6 C -0.659 4.659 7 H 0.055 0.945 8 C -0.230 4.230 9 N -0.566 5.566 10 Si 0.927 3.073 11 H -0.209 1.209 12 H -0.194 1.194 13 H -0.203 1.203 14 N -0.253 5.253 15 C -0.074 4.074 16 C -0.171 4.171 17 C -0.020 4.020 18 H 0.128 0.872 19 C -0.102 4.102 20 H 0.097 0.903 21 C -0.150 4.150 22 C -0.033 4.033 23 H 0.097 0.903 24 C -0.007 4.007 25 N -0.161 5.161 26 C -0.039 4.039 27 N -0.306 5.306 28 C -0.114 4.114 29 N -0.167 5.167 30 N -0.241 5.241 31 C -0.148 4.148 32 C -0.061 4.061 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.024 0.976 39 H -0.009 1.009 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.114 0.886 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.131 0.869 48 H 0.131 0.869 49 H 0.247 0.753 50 H 0.256 0.744 51 H 0.107 0.893 52 H 0.095 0.905 53 H 0.063 0.937 54 H 0.067 0.933 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.399 -0.846 17.682 19.594 hybrid contribution -1.555 1.270 -0.284 2.028 sum -9.955 0.423 17.398 20.049 Atomic orbital electron populations 1.22359 0.95870 1.02165 1.02795 1.21646 0.93396 0.97325 0.89722 0.91114 1.21454 0.96375 0.98836 0.95867 1.18893 0.93106 0.93322 0.95176 1.22521 0.94503 1.34125 1.14730 0.94465 1.27066 0.94289 0.98104 1.03589 1.70905 1.37451 1.31425 1.16805 0.83103 0.75792 0.75210 0.73216 1.20893 1.19434 1.20333 1.62448 1.59211 1.01740 1.01942 1.21771 0.98400 0.97987 0.89255 1.21829 1.00879 0.95982 0.98382 1.22711 0.96896 0.91926 0.90436 0.87202 1.21534 0.94920 0.99175 0.94581 0.90251 1.22486 0.96735 1.00481 0.95274 1.22563 0.88912 0.99731 0.92083 0.90334 1.22813 0.83568 0.97628 0.96646 1.50564 1.25720 1.05523 1.34341 1.26407 0.87301 1.01130 0.89101 1.70560 1.29799 1.01205 1.28990 1.26540 0.94143 0.97765 0.92994 1.77868 1.17817 0.95595 1.25381 1.64319 1.10288 1.35403 1.14116 1.22819 1.01651 0.94985 0.95352 1.21435 0.97272 0.89739 0.97643 0.90972 0.91927 0.92572 0.93628 0.93740 0.97587 1.00857 0.93386 0.90639 0.93389 0.88564 0.92589 0.94930 0.91884 0.86945 0.86860 0.75341 0.74371 0.89324 0.90455 0.93654 0.93347 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.46 71.98 0.61 -3.49 16 2 C 0.09 2.71 2.38 44.92 0.11 2.82 16 3 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 4 C -0.09 -3.57 4.41 30.59 0.13 -3.44 16 5 C 0.03 1.67 4.22 29.85 0.13 1.80 16 6 C -0.62 -36.53 9.11 25.60 0.23 -36.30 16 7 H 0.04 2.17 7.74 -2.91 -0.02 2.15 16 8 C -0.03 -1.89 5.46 84.66 0.46 -1.43 16 9 N -0.93 -58.49 13.65 21.45 0.29 -58.20 16 10 Si 1.10 53.15 29.90 68.60 2.05 55.20 16 11 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 N -0.53 -15.14 3.56 -879.06 -3.13 -18.27 16 15 C 0.05 1.12 4.83 85.54 0.41 1.53 16 16 C -0.13 -2.32 3.64 29.93 0.11 -2.21 16 17 C 0.09 1.66 3.71 44.95 0.17 1.83 16 18 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 19 C -0.08 -2.10 3.01 -10.61 -0.03 -2.13 16 20 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 21 C -0.11 -3.37 5.21 31.60 0.16 -3.21 16 22 C 0.08 1.83 3.35 45.34 0.15 1.98 16 23 H 0.08 2.21 8.12 -2.39 -0.02 2.19 16 24 C 0.12 2.49 4.56 86.38 0.39 2.88 16 25 N -0.37 -10.69 3.48 -352.05 -1.22 -11.91 16 26 C 0.26 8.25 12.63 180.36 2.28 10.53 16 27 N -0.58 -21.06 11.19 -204.00 -2.28 -23.34 16 28 C 0.19 5.95 13.03 180.77 2.36 8.31 16 29 N -0.34 -10.72 12.57 -61.25 -0.77 -11.49 16 30 N -0.52 -9.83 5.44 -859.55 -4.68 -14.50 16 31 C 0.00 -0.01 7.19 127.69 0.92 0.91 16 32 C 0.07 1.90 4.09 85.73 0.35 2.25 16 33 H 0.07 1.40 6.69 -2.39 -0.02 1.39 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.33 6.46 -2.39 -0.02 1.32 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.86 6.16 -2.38 -0.01 1.84 16 38 H 0.01 0.32 7.44 -2.38 -0.02 0.30 16 39 H -0.03 -1.52 8.01 -2.39 -0.02 -1.54 16 40 H 0.26 16.23 7.22 -92.71 -0.67 15.56 16 41 H 0.08 1.55 8.06 -2.39 -0.02 1.54 16 42 H 0.05 0.87 6.83 -2.38 -0.02 0.85 16 43 H 0.10 1.19 7.28 -2.39 -0.02 1.18 16 44 H 0.06 1.17 5.13 -2.39 -0.01 1.16 16 45 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.06 2.24 6.93 -2.39 -0.02 2.22 16 47 H 0.11 2.15 5.94 -2.39 -0.01 2.13 16 48 H 0.11 1.98 6.44 -2.38 -0.02 1.96 16 49 H 0.23 6.25 8.06 -2.91 -0.02 6.23 16 50 H 0.24 5.65 8.06 -2.91 -0.02 5.63 16 51 H 0.09 0.90 7.74 -2.39 -0.02 0.89 16 52 H 0.08 0.92 7.03 -2.39 -0.02 0.90 16 53 H 0.05 0.57 4.52 -2.39 -0.01 0.56 16 54 H 0.05 1.18 6.41 -2.39 -0.02 1.17 16 55 H 0.05 1.78 6.00 -2.39 -0.01 1.76 16 Total: -1.00 -74.44 401.43 0.18 -74.26 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.98 Total: 25.63 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 8.94 Total: -17.37 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -11.79 Total: -137.71 kcal Atomic # 14 Polarization: 53.15 SS G_CDS: 2.05 Total: 55.20 kcal Total: -74.44 0.18 -74.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500077.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.798 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds