Wall clock time and date at job start Wed Apr 1 2020 05:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 117.00096 * 2 1 4 4 O 1.20829 * 119.99614 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00051 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47063 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47395 * 179.97438 * 6 5 3 8 8 C 1.36937 * 119.99793 * 89.99683 * 7 6 5 9 9 H 1.08000 * 120.00427 * 325.77187 * 8 7 6 10 10 C 1.38817 * 119.99528 * 145.77040 * 8 7 6 11 11 N 1.31613 * 120.00401 * 340.17715 * 10 8 7 12 12 Si 1.86803 * 119.99613 * 160.17906 * 10 8 7 13 13 H 1.48499 * 109.47230 * 89.99811 * 12 10 8 14 14 H 1.48501 * 109.46866 * 209.99809 * 12 10 8 15 15 H 1.48496 * 109.47205 * 329.99834 * 12 10 8 16 16 C 1.46499 * 120.00076 * 270.00811 * 7 6 5 17 17 C 1.50695 * 109.47284 * 95.36141 * 16 7 6 18 18 N 1.29045 * 124.90939 * 90.00207 * 17 16 7 19 19 C 1.31817 * 117.11788 * 179.97438 * 18 17 16 20 20 Br 1.89100 * 122.75574 * 179.97438 * 19 18 17 21 21 C 1.33701 * 114.48221 * 0.02562 * 19 18 17 22 22 S 1.70978 * 124.91081 * 269.69011 * 17 16 7 23 23 H 1.08993 * 109.46896 * 300.00143 * 1 2 3 24 24 H 1.08997 * 109.47167 * 59.99892 * 1 2 3 25 25 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47006 * 60.00018 * 5 3 2 27 27 H 1.09001 * 109.47034 * 300.00327 * 5 3 2 28 28 H 1.09004 * 109.47052 * 60.00221 * 6 5 3 29 29 H 1.08996 * 109.47185 * 300.00366 * 6 5 3 30 30 H 0.96997 * 120.00468 * 179.97438 * 11 10 8 31 31 H 1.09004 * 109.46618 * 215.36118 * 16 7 6 32 32 H 1.09004 * 109.46902 * 335.35664 * 16 7 6 33 33 H 1.07996 * 126.03595 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4631 2.8188 -0.0011 8 6 6.1469 2.8542 -1.1870 9 1 5.7754 2.3075 -2.0411 10 6 7.3177 3.5928 -1.2913 11 7 7.5717 4.5495 -0.4239 12 14 8.5325 3.2287 -2.6628 13 1 8.1992 4.0543 -3.8514 14 1 9.9075 3.5526 -2.2050 15 1 8.4565 1.7900 -3.0225 16 6 6.1946 2.8575 1.2677 17 6 6.6343 1.4642 1.6367 18 7 7.7559 0.9278 1.2907 19 6 7.9842 -0.3043 1.6999 20 35 9.5729 -1.2423 1.2852 21 6 6.9997 -0.8366 2.4314 22 16 5.7227 0.3681 2.5806 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.9557 0.7809 -0.8909 27 1 3.9564 0.7805 0.8891 28 1 3.6108 3.2364 0.8890 29 1 3.6101 3.2360 -0.8910 30 1 8.3900 5.0653 -0.4965 31 1 7.0697 3.4990 1.1631 32 1 5.5457 3.2527 2.0493 33 1 6.9907 -1.8282 2.8590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183410196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:25 Heat of formation + Delta-G solvation = -15.732130 kcal Electronic energy + Delta-G solvation = -20467.038865 eV Core-core repulsion = 17088.184279 eV Total energy + Delta-G solvation = -3378.854586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19429 -39.16026 -36.63220 -35.88891 -32.29248 -31.79443 -30.34162 -29.14238 -27.61404 -26.87641 -24.65612 -23.20160 -21.34158 -20.10423 -19.25761 -17.79537 -17.42149 -16.77207 -16.31955 -16.25902 -15.21802 -14.77888 -14.50906 -14.06546 -13.76511 -13.35503 -13.29724 -13.18382 -12.77285 -12.27177 -12.13946 -11.57906 -11.40925 -11.21049 -10.90779 -10.78129 -10.74391 -10.67888 -10.36952 -10.19966 -10.17329 -10.12540 -10.04364 -9.07999 -8.98164 -8.71077 -8.27872 -6.94548 -5.96561 -3.55237 1.04945 1.27124 1.93912 2.43755 2.50882 2.93514 3.15369 3.35680 3.44112 3.48418 4.39690 4.91446 5.03695 5.11705 5.17886 5.24349 5.40981 5.46469 5.51192 5.56941 5.61636 5.80570 6.06503 6.25623 6.40906 6.46569 6.57038 6.81730 7.37441 7.66304 7.99119 8.15872 8.31222 8.91945 9.56953 10.04657 11.03995 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.009522 B = 0.005089 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.907539 B = 5500.354568 C = 7466.455483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.465 3.535 4 O -0.511 6.511 5 C -0.144 4.144 6 C 0.157 3.843 7 N -0.558 5.558 8 C -0.267 4.267 9 H 0.066 0.934 10 C 0.029 3.971 11 N -0.878 5.878 12 Si 0.905 3.095 13 H -0.286 1.286 14 H -0.285 1.285 15 H -0.276 1.276 16 C 0.189 3.811 17 C 0.101 3.899 18 N -0.452 5.452 19 C 0.081 3.919 20 Br -0.006 7.006 21 C -0.254 4.254 22 S 0.082 5.918 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.261 0.739 31 H 0.144 0.856 32 H 0.057 0.943 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 -11.540 6.441 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.308 3.692 4 O -0.398 6.398 5 C -0.184 4.184 6 C 0.030 3.970 7 N -0.276 5.276 8 C -0.396 4.396 9 H 0.084 0.916 10 C -0.172 4.172 11 N -0.519 5.519 12 Si 0.733 3.267 13 H -0.213 1.213 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.058 3.942 17 C -0.182 4.182 18 N -0.166 5.166 19 C -0.131 4.131 20 Br 0.077 6.923 21 C -0.397 4.397 22 S 0.336 5.664 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.076 0.924 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.264 -11.049 6.447 13.484 hybrid contribution 0.924 -0.865 -0.818 1.507 sum -3.340 -11.914 5.629 13.594 Atomic orbital electron populations 1.23182 0.77313 1.03149 1.02319 1.86570 1.22796 1.34445 1.84422 1.24269 0.92523 0.80889 0.71525 1.90634 1.67389 1.36280 1.45545 1.22510 0.85344 1.05082 1.05494 1.20820 0.84674 0.89830 1.01715 1.43827 0.99182 1.82433 1.02136 1.19002 1.06415 1.24769 0.89427 0.91598 1.25032 0.99895 0.94330 0.97972 1.69713 1.25908 1.18924 1.37379 0.86272 0.80756 0.78520 0.81105 1.21290 1.21080 1.20102 1.20317 1.01105 0.85881 0.86899 1.29717 0.90255 1.03781 0.94437 1.66116 1.19918 1.08133 1.22421 1.21663 0.95467 0.93548 1.02469 1.96652 1.30268 1.71073 1.94334 1.26609 0.97440 1.05545 1.10086 1.83922 1.23727 1.07662 1.51101 0.92149 0.92132 0.88588 0.87885 0.88507 0.93064 0.91242 0.92877 0.83958 0.92426 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -5.24 10.57 -39.27 -0.41 -5.66 16 3 C 0.46 7.59 7.96 36.00 0.29 7.87 16 4 O -0.51 -9.37 15.73 -18.75 -0.29 -9.67 16 5 C -0.14 -2.43 6.13 -27.89 -0.17 -2.60 16 6 C 0.16 3.06 5.00 -4.04 -0.02 3.04 16 7 N -0.56 -12.60 2.45 -174.61 -0.43 -13.03 16 8 C -0.27 -6.79 9.47 -15.06 -0.14 -6.93 16 9 H 0.07 1.68 7.90 -52.49 -0.41 1.27 16 10 C 0.03 0.77 5.07 -17.43 -0.09 0.68 16 11 N -0.88 -23.64 11.08 55.49 0.61 -23.03 16 12 Si 0.90 21.56 29.60 -169.99 -5.03 16.52 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.19 4.07 5.95 -5.20 -0.03 4.04 16 17 C 0.10 2.02 6.90 -13.45 -0.09 1.93 16 18 N -0.45 -9.67 10.55 -10.26 -0.11 -9.78 16 19 C 0.08 1.48 7.18 -19.15 -0.14 1.34 16 20 Br -0.01 -0.09 33.99 -68.01 -2.31 -2.40 16 21 C -0.25 -3.93 11.20 29.14 0.33 -3.60 16 22 S 0.08 1.28 20.96 -107.50 -2.25 -0.97 16 23 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 24 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 27 H 0.10 1.58 5.68 -51.93 -0.30 1.29 16 28 H 0.05 0.96 7.81 -51.93 -0.41 0.55 16 29 H 0.07 1.43 8.00 -51.93 -0.42 1.02 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.14 3.56 5.19 -51.93 -0.27 3.29 16 32 H 0.06 1.10 7.83 -51.93 -0.41 0.69 16 33 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -28.79 323.00 -7.82 -36.61 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -3.45 Total: -0.66 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 1.00 Total: 7.19 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.08 Total: -45.84 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.71 Total: -15.32 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.25 Total: -0.97 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.31 Total: -2.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.79 -7.82 -36.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183410196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.880 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds