Wall clock time and date at job start Wed Apr 1 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 117.00096 * 2 1 4 4 O 1.20829 * 119.99614 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00051 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47063 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47395 * 179.97438 * 6 5 3 8 8 C 1.36937 * 119.99793 * 89.99683 * 7 6 5 9 9 H 1.08000 * 120.00427 * 325.77187 * 8 7 6 10 10 C 1.38817 * 119.99528 * 145.77040 * 8 7 6 11 11 N 1.31613 * 120.00401 * 340.17715 * 10 8 7 12 12 Si 1.86803 * 119.99613 * 160.17906 * 10 8 7 13 13 H 1.48499 * 109.47230 * 89.99811 * 12 10 8 14 14 H 1.48501 * 109.46866 * 209.99809 * 12 10 8 15 15 H 1.48496 * 109.47205 * 329.99834 * 12 10 8 16 16 C 1.46499 * 120.00076 * 270.00811 * 7 6 5 17 17 C 1.50695 * 109.47284 * 95.36141 * 16 7 6 18 18 N 1.29045 * 124.90939 * 90.00207 * 17 16 7 19 19 C 1.31817 * 117.11788 * 179.97438 * 18 17 16 20 20 Br 1.89100 * 122.75574 * 179.97438 * 19 18 17 21 21 C 1.33701 * 114.48221 * 0.02562 * 19 18 17 22 22 S 1.70978 * 124.91081 * 269.69011 * 17 16 7 23 23 H 1.08993 * 109.46896 * 300.00143 * 1 2 3 24 24 H 1.08997 * 109.47167 * 59.99892 * 1 2 3 25 25 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47006 * 60.00018 * 5 3 2 27 27 H 1.09001 * 109.47034 * 300.00327 * 5 3 2 28 28 H 1.09004 * 109.47052 * 60.00221 * 6 5 3 29 29 H 1.08996 * 109.47185 * 300.00366 * 6 5 3 30 30 H 0.96997 * 120.00468 * 179.97438 * 11 10 8 31 31 H 1.09004 * 109.46618 * 215.36118 * 16 7 6 32 32 H 1.09004 * 109.46902 * 335.35664 * 16 7 6 33 33 H 1.07996 * 126.03595 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4631 2.8188 -0.0011 8 6 6.1469 2.8542 -1.1870 9 1 5.7754 2.3075 -2.0411 10 6 7.3177 3.5928 -1.2913 11 7 7.5717 4.5495 -0.4239 12 14 8.5325 3.2287 -2.6628 13 1 8.1992 4.0543 -3.8514 14 1 9.9075 3.5526 -2.2050 15 1 8.4565 1.7900 -3.0225 16 6 6.1946 2.8575 1.2677 17 6 6.6343 1.4642 1.6367 18 7 7.7559 0.9278 1.2907 19 6 7.9842 -0.3043 1.6999 20 35 9.5729 -1.2423 1.2852 21 6 6.9997 -0.8366 2.4314 22 16 5.7227 0.3681 2.5806 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.9557 0.7809 -0.8909 27 1 3.9564 0.7805 0.8891 28 1 3.6108 3.2364 0.8890 29 1 3.6101 3.2360 -0.8910 30 1 8.3900 5.0653 -0.4965 31 1 7.0697 3.4990 1.1631 32 1 5.5457 3.2527 2.0493 33 1 6.9907 -1.8282 2.8590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183410196.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:24 Heat of formation + Delta-G solvation = -32.417724 kcal Electronic energy + Delta-G solvation = -20467.762407 eV Core-core repulsion = 17088.184279 eV Total energy + Delta-G solvation = -3379.578128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.44710 -40.59569 -38.07558 -37.32327 -34.02546 -33.21163 -31.84013 -30.54164 -28.74665 -28.37298 -26.29607 -24.63749 -22.88779 -21.49900 -20.67764 -19.33738 -18.74488 -18.33188 -17.56057 -17.51947 -16.75441 -16.39469 -16.03704 -15.61660 -15.24594 -14.76693 -14.69354 -14.56778 -14.14190 -13.65509 -13.33842 -13.10868 -12.82539 -12.77011 -12.65325 -12.55713 -12.20041 -12.07552 -11.99557 -11.77065 -11.61775 -11.52412 -11.39310 -10.61645 -10.51636 -10.34237 -9.60851 -8.76798 -7.88057 -5.50193 -0.29841 -0.00956 0.53811 1.12057 1.21140 1.43013 1.49662 1.55167 1.69345 1.81699 2.50280 3.25609 3.52651 3.65017 3.95718 4.12933 4.21797 4.26468 4.35462 4.37406 4.40415 4.61220 4.68660 4.74325 4.92120 4.96516 5.21367 5.40297 5.58244 5.70647 6.38257 6.75540 6.82084 7.06493 7.72808 8.19147 9.08570 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.009522 B = 0.005089 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.907539 B = 5500.354568 C = 7466.455483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.473 3.527 4 O -0.535 6.535 5 C -0.130 4.130 6 C 0.159 3.841 7 N -0.573 5.573 8 C -0.266 4.266 9 H 0.059 0.941 10 C -0.010 4.010 11 N -0.903 5.903 12 Si 0.945 3.055 13 H -0.281 1.281 14 H -0.293 1.293 15 H -0.280 1.280 16 C 0.193 3.807 17 C 0.064 3.936 18 N -0.488 5.488 19 C 0.044 3.956 20 Br 0.007 6.993 21 C -0.230 4.230 22 S 0.167 5.833 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.132 0.868 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.255 0.745 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 -14.110 7.673 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.317 3.683 4 O -0.424 6.424 5 C -0.171 4.171 6 C 0.033 3.967 7 N -0.292 5.292 8 C -0.396 4.396 9 H 0.076 0.924 10 C -0.209 4.209 11 N -0.547 5.547 12 Si 0.774 3.226 13 H -0.207 1.207 14 H -0.220 1.220 15 H -0.206 1.206 16 C 0.062 3.938 17 C -0.218 4.218 18 N -0.204 5.204 19 C -0.167 4.167 20 Br 0.090 6.910 21 C -0.372 4.372 22 S 0.421 5.579 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.150 0.850 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.712 -13.647 7.679 16.669 hybrid contribution 1.251 -0.238 -1.054 1.653 sum -4.461 -13.885 6.625 16.019 Atomic orbital electron populations 1.23557 0.74894 1.05668 1.02558 1.86532 1.25062 1.32884 1.83785 1.23943 0.92113 0.81186 0.71023 1.90633 1.67806 1.37209 1.46793 1.22198 0.86266 1.02910 1.05718 1.20754 0.83213 0.91579 1.01132 1.43844 1.00167 1.83472 1.01679 1.19075 1.06355 1.23678 0.90459 0.92350 1.25470 1.01216 0.94807 0.99411 1.69840 1.25968 1.20111 1.38733 0.85642 0.79178 0.77896 0.79898 1.20743 1.21973 1.20595 1.19969 0.99952 0.86900 0.86934 1.29007 0.91636 1.04179 0.97019 1.66062 1.21231 1.09874 1.23211 1.21909 0.97179 0.93314 1.04269 1.96641 1.29744 1.70206 1.94455 1.27194 0.96108 1.06693 1.07253 1.83520 1.21316 1.05064 1.48015 0.91717 0.92191 0.84968 0.88306 0.87593 0.92365 0.93112 0.93583 0.87626 0.90692 0.77014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.37 -9.52 10.57 -51.47 -0.54 -10.06 16 3 C 0.47 14.64 7.96 71.24 0.57 15.20 16 4 O -0.53 -18.99 15.73 21.96 0.35 -18.64 16 5 C -0.13 -4.25 6.13 29.85 0.18 -4.06 16 6 C 0.16 6.21 5.00 86.38 0.43 6.64 16 7 N -0.57 -26.13 2.45 -706.35 -1.73 -27.86 16 8 C -0.27 -13.81 9.47 84.03 0.80 -13.01 16 9 H 0.06 3.05 7.90 -2.91 -0.02 3.03 16 10 C -0.01 -0.55 5.07 84.86 0.43 -0.12 16 11 N -0.90 -50.42 11.08 21.65 0.24 -50.18 16 12 Si 0.94 45.34 29.60 68.60 2.03 47.37 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 15 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 16 C 0.19 8.37 5.95 85.63 0.51 8.88 16 17 C 0.06 2.49 6.90 88.52 0.61 3.10 16 18 N -0.49 -20.62 10.55 -186.39 -1.97 -22.59 16 19 C 0.04 1.54 7.18 83.66 0.60 2.14 16 20 Br 0.01 0.22 33.99 -20.37 -0.69 -0.47 16 21 C -0.23 -6.25 11.20 66.79 0.75 -5.51 16 22 S 0.17 4.67 20.96 -56.49 -1.18 3.49 16 23 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 24 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 25 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 27 H 0.11 3.21 5.68 -2.39 -0.01 3.19 16 28 H 0.06 2.15 7.81 -2.38 -0.02 2.14 16 29 H 0.05 2.13 8.00 -2.39 -0.02 2.11 16 30 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.11 5.48 5.19 -2.38 -0.01 5.47 16 32 H 0.07 2.85 7.83 -2.39 -0.02 2.83 16 33 H 0.21 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -63.57 323.00 3.72 -59.85 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.14 Total: 4.17 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 6.07 Total: 14.94 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -3.46 Total: -100.64 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.20 Total: -28.70 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.18 Total: 3.49 kcal Atomic # 35 Polarization: 0.22 SS G_CDS: -0.69 Total: -0.47 kcal Total: -63.57 3.72 -59.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183410196.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.433 kcal (2) G-P(sol) polarization free energy of solvation -63.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds