Wall clock time and date at job start Wed Apr 1 2020 05:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36902 * 120.00585 * 2 1 4 4 H 1.07996 * 120.00150 * 138.50707 * 3 2 1 5 5 C 1.39022 * 119.99433 * 318.50522 * 3 2 1 6 6 N 1.31384 * 120.00263 * 46.30006 * 5 3 2 7 7 Si 1.86804 * 120.00202 * 226.29951 * 5 3 2 8 8 H 1.48501 * 109.46714 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.47306 * 120.00051 * 7 5 3 10 10 H 1.48504 * 109.47257 * 240.00269 * 7 5 3 11 11 C 1.34785 * 119.99597 * 179.97438 * 2 1 3 12 12 O 1.21630 * 119.99774 * 187.87953 * 11 2 1 13 13 C 1.47413 * 119.99981 * 7.88435 * 11 2 1 14 14 C 1.40042 * 120.59932 * 319.47996 * 13 11 2 15 15 C 1.38376 * 118.34124 * 179.97438 * 14 13 11 16 16 I 2.09493 * 120.27815 * 179.97438 * 15 14 13 17 17 C 1.38425 * 119.44760 * 0.02562 * 15 14 13 18 18 N 1.31895 * 121.18957 * 359.72116 * 17 15 14 19 19 C 1.32212 * 121.81376 * 0.56682 * 18 17 15 20 20 O 1.35443 * 119.79815 * 179.70915 * 19 18 17 21 21 H 1.09000 * 109.47411 * 278.66206 * 1 2 3 22 22 H 1.09002 * 109.46833 * 38.65594 * 1 2 3 23 23 H 1.08998 * 109.47783 * 158.65786 * 1 2 3 24 24 H 0.97004 * 120.00028 * 179.97438 * 6 5 3 25 25 H 1.07999 * 120.83234 * 359.96860 * 14 13 11 26 26 H 1.07997 * 119.40116 * 180.02562 * 17 15 14 27 27 H 0.96704 * 113.99737 * 269.72431 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1855 0.0000 4 1 3.0263 1.3028 0.6196 5 6 1.7161 2.2384 -0.7977 6 7 0.4440 2.5661 -0.8190 7 14 2.9425 3.1872 -1.8395 8 1 4.3020 2.6244 -1.6392 9 1 2.5668 3.0747 -3.2718 10 1 2.9334 4.6164 -1.4362 11 6 2.1388 -1.1673 0.0005 12 8 3.3465 -1.1723 0.1449 13 6 1.4121 -2.4379 -0.1740 14 6 0.1778 -2.6454 0.4543 15 6 -0.4641 -3.8554 0.2579 16 53 -2.3127 -4.2306 1.1694 17 6 0.1258 -4.8163 -0.5450 18 7 1.2870 -4.5976 -1.1312 19 6 1.9448 -3.4618 -0.9726 20 8 3.1373 -3.2829 -1.5893 21 1 -0.3634 0.1548 1.0159 22 1 -0.3633 0.8025 -0.6419 23 1 -0.3634 -0.9571 -0.3740 24 1 0.1417 3.3010 -1.3753 25 1 -0.2620 -1.8802 1.0767 26 1 -0.3760 -5.7603 -0.6981 27 1 3.8983 -3.5652 -1.0635 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190609156.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:09 Heat of formation + Delta-G solvation = 6.081997 kcal Electronic energy + Delta-G solvation = -16620.267267 eV Core-core repulsion = 13625.322179 eV Total energy + Delta-G solvation = -2994.945088 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 347.976 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.59925 -38.13683 -36.97730 -34.76966 -33.15670 -32.17885 -31.16904 -27.68933 -26.58868 -25.39701 -23.50577 -22.69215 -19.72874 -18.49817 -17.22485 -16.84786 -16.20440 -15.76282 -14.90309 -14.69366 -14.17978 -13.99847 -13.38117 -13.09547 -13.01797 -12.15098 -11.97480 -11.71093 -11.52977 -11.37707 -10.90568 -10.65037 -10.48831 -10.31427 -10.05169 -9.52467 -9.47734 -8.74802 -8.68297 -8.54140 -7.85287 -6.84512 -3.98371 0.76980 0.97786 1.09745 3.05226 3.22769 3.28161 3.39270 3.79955 3.93025 4.08603 4.46252 4.69516 4.74960 4.84832 5.10883 5.38857 5.68836 5.83063 5.95216 6.08884 6.38572 6.47875 7.01111 7.42091 7.69013 7.91081 8.12893 8.32503 8.96084 9.14211 9.80623 10.19557 Molecular weight = 347.98amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.004433 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.454192 B = 6314.542711 C = 7406.633314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.424 5.424 3 C -0.350 4.350 4 H 0.102 0.898 5 C 0.080 3.920 6 N -0.813 5.813 7 Si 0.884 3.116 8 H -0.259 1.259 9 H -0.276 1.276 10 H -0.281 1.281 11 C 0.489 3.511 12 O -0.572 6.572 13 C -0.155 4.155 14 C -0.016 4.016 15 C -0.177 4.177 16 I -0.028 7.028 17 C 0.155 3.845 18 N -0.500 5.500 19 C 0.362 3.638 20 O -0.464 6.464 21 H 0.042 0.958 22 H 0.116 0.884 23 H 0.042 0.958 24 H 0.276 0.724 25 H 0.155 0.845 26 H 0.162 0.838 27 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 -13.611 3.532 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.142 5.142 3 C -0.475 4.475 4 H 0.119 0.881 5 C -0.132 4.132 6 N -0.444 5.444 7 Si 0.708 3.292 8 H -0.183 1.183 9 H -0.201 1.201 10 H -0.207 1.207 11 C 0.277 3.723 12 O -0.457 6.457 13 C -0.164 4.164 14 C -0.045 4.045 15 C -0.320 4.320 16 I 0.119 6.881 17 C -0.006 4.006 18 N -0.220 5.220 19 C 0.182 3.818 20 O -0.272 6.272 21 H 0.060 0.940 22 H 0.134 0.866 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.172 0.828 26 H 0.179 0.821 27 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -10.417 -14.042 3.170 17.770 hybrid contribution 1.239 1.215 -0.233 1.751 sum -9.179 -12.827 2.937 16.044 Atomic orbital electron populations 1.22915 0.82621 1.02398 1.02065 1.43336 1.04919 1.04705 1.61205 1.19121 1.11848 0.89544 1.26940 0.88063 1.25551 0.95701 0.96661 0.95290 1.70090 1.16955 1.25049 1.32312 0.86630 0.83619 0.78357 0.80619 1.18272 1.20092 1.20688 1.17433 0.86986 0.82317 0.85544 1.90614 1.13569 1.86218 1.55263 1.21594 0.96749 0.98573 0.99481 1.22022 0.92101 0.94938 0.95410 1.25219 1.00472 0.98815 1.07450 1.96769 1.16304 1.95844 1.79200 1.22439 0.89862 0.97729 0.90527 1.67332 1.09398 1.22588 1.22664 1.19177 0.88095 0.87114 0.87394 1.84644 1.13109 1.85150 1.44300 0.93982 0.86594 0.93956 0.91374 0.82784 0.82090 0.73246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 8.57 59.84 0.51 1.44 15 2 N -0.42 -10.64 2.99 -123.43 -0.37 -11.01 15 3 C -0.35 -9.48 8.75 -15.00 -0.13 -9.61 15 4 H 0.10 2.89 7.92 -52.49 -0.42 2.47 15 5 C 0.08 2.03 5.28 -17.45 -0.09 1.94 15 6 N -0.81 -20.18 10.87 55.50 0.60 -19.58 15 7 Si 0.88 19.84 29.69 -169.99 -5.05 14.79 15 8 H -0.26 -6.05 7.11 56.52 0.40 -5.65 15 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 11 C 0.49 11.89 7.10 -12.52 -0.09 11.80 15 12 O -0.57 -15.38 16.08 -10.03 -0.16 -15.54 15 13 C -0.15 -3.08 5.33 -104.69 -0.56 -3.64 15 14 C -0.02 -0.27 7.20 -38.85 -0.28 -0.55 15 15 C -0.18 -2.50 6.21 -39.46 -0.25 -2.74 15 16 I -0.03 -0.32 40.29 -73.02 -2.94 -3.26 15 17 C 0.16 2.17 10.90 -17.46 -0.19 1.98 15 18 N -0.50 -8.35 10.37 -12.95 -0.13 -8.48 15 19 C 0.36 6.80 7.74 -16.59 -0.13 6.67 15 20 O -0.46 -8.66 12.37 -33.30 -0.41 -9.07 15 21 H 0.04 0.85 7.81 -51.93 -0.41 0.44 15 22 H 0.12 2.71 5.21 -51.93 -0.27 2.44 15 23 H 0.04 0.81 4.55 -51.93 -0.24 0.57 15 24 H 0.28 6.33 8.31 -40.82 -0.34 5.99 15 25 H 0.15 2.51 5.79 -52.49 -0.30 2.20 15 26 H 0.16 1.75 8.06 -52.49 -0.42 1.32 15 27 H 0.41 5.92 9.06 45.56 0.41 6.33 15 LS Contribution 267.79 15.07 4.04 4.04 Total: -1.00 -29.73 267.79 -6.40 -36.14 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -0.78 Total: 4.69 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.20 Total: 7.28 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.10 Total: -39.07 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.57 Total: -24.61 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.05 Total: 14.79 kcal Atomic # 53 Polarization: -0.32 SS G_CDS: -2.94 Total: -3.26 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.73 -6.40 -36.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190609156.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.219 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds