Wall clock time and date at job start Wed Apr 1 2020 05:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36902 * 120.00585 * 2 1 4 4 H 1.07996 * 120.00150 * 138.50707 * 3 2 1 5 5 C 1.39022 * 119.99433 * 318.50522 * 3 2 1 6 6 N 1.31384 * 120.00263 * 46.30006 * 5 3 2 7 7 Si 1.86804 * 120.00202 * 226.29951 * 5 3 2 8 8 H 1.48501 * 109.46714 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.47306 * 120.00051 * 7 5 3 10 10 H 1.48504 * 109.47257 * 240.00269 * 7 5 3 11 11 C 1.34785 * 119.99597 * 179.97438 * 2 1 3 12 12 O 1.21630 * 119.99774 * 187.87953 * 11 2 1 13 13 C 1.47413 * 119.99981 * 7.88435 * 11 2 1 14 14 C 1.40042 * 120.59932 * 319.47996 * 13 11 2 15 15 C 1.38376 * 118.34124 * 179.97438 * 14 13 11 16 16 I 2.09493 * 120.27815 * 179.97438 * 15 14 13 17 17 C 1.38425 * 119.44760 * 0.02562 * 15 14 13 18 18 N 1.31895 * 121.18957 * 359.72116 * 17 15 14 19 19 C 1.32212 * 121.81376 * 0.56682 * 18 17 15 20 20 O 1.35443 * 119.79815 * 179.70915 * 19 18 17 21 21 H 1.09000 * 109.47411 * 278.66206 * 1 2 3 22 22 H 1.09002 * 109.46833 * 38.65594 * 1 2 3 23 23 H 1.08998 * 109.47783 * 158.65786 * 1 2 3 24 24 H 0.97004 * 120.00028 * 179.97438 * 6 5 3 25 25 H 1.07999 * 120.83234 * 359.96860 * 14 13 11 26 26 H 1.07997 * 119.40116 * 180.02562 * 17 15 14 27 27 H 0.96704 * 113.99737 * 269.72431 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1855 0.0000 4 1 3.0263 1.3028 0.6196 5 6 1.7161 2.2384 -0.7977 6 7 0.4440 2.5661 -0.8190 7 14 2.9425 3.1872 -1.8395 8 1 4.3020 2.6244 -1.6392 9 1 2.5668 3.0747 -3.2718 10 1 2.9334 4.6164 -1.4362 11 6 2.1388 -1.1673 0.0005 12 8 3.3465 -1.1723 0.1449 13 6 1.4121 -2.4379 -0.1740 14 6 0.1778 -2.6454 0.4543 15 6 -0.4641 -3.8554 0.2579 16 53 -2.3127 -4.2306 1.1694 17 6 0.1258 -4.8163 -0.5450 18 7 1.2870 -4.5976 -1.1312 19 6 1.9448 -3.4618 -0.9726 20 8 3.1373 -3.2829 -1.5893 21 1 -0.3634 0.1548 1.0159 22 1 -0.3633 0.8025 -0.6419 23 1 -0.3634 -0.9571 -0.3740 24 1 0.1417 3.3010 -1.3753 25 1 -0.2620 -1.8802 1.0767 26 1 -0.3760 -5.7603 -0.6981 27 1 3.8983 -3.5652 -1.0635 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190609156.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:09 Heat of formation + Delta-G solvation = -15.827633 kcal Electronic energy + Delta-G solvation = -16621.217340 eV Core-core repulsion = 13625.322179 eV Total energy + Delta-G solvation = -2995.895161 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 347.976 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.02449 -39.89340 -38.37641 -36.67479 -34.66003 -33.79274 -32.66658 -28.92059 -28.37987 -27.10319 -25.03877 -24.12087 -21.40885 -19.91083 -19.11807 -18.29903 -17.84913 -17.18789 -16.76507 -16.29296 -15.95713 -15.61397 -14.79077 -14.67560 -14.42466 -13.90746 -13.71508 -13.38978 -13.23522 -12.75375 -12.61735 -12.39991 -12.16611 -11.72924 -11.10148 -11.00366 -10.81711 -10.59652 -10.38750 -9.95126 -9.75236 -8.75797 -5.99397 -0.55259 -0.24431 -0.16401 1.25392 1.39317 1.51285 1.86284 2.13364 2.35350 2.49996 2.62071 2.99035 3.46130 3.54610 3.63860 4.01396 4.22353 4.41917 4.50707 4.63428 4.77171 5.09758 5.18079 5.53445 6.11564 6.36713 6.44888 6.61864 7.02685 7.26320 7.91667 8.29420 Molecular weight = 347.98amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.004433 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.454192 B = 6314.542711 C = 7406.633314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.440 5.440 3 C -0.397 4.397 4 H 0.069 0.931 5 C 0.057 3.943 6 N -0.820 5.820 7 Si 0.940 3.060 8 H -0.281 1.281 9 H -0.267 1.267 10 H -0.263 1.263 11 C 0.485 3.515 12 O -0.611 6.611 13 C -0.184 4.184 14 C -0.007 4.007 15 C -0.179 4.179 16 I 0.018 6.982 17 C 0.175 3.825 18 N -0.506 5.506 19 C 0.359 3.641 20 O -0.481 6.481 21 H 0.051 0.949 22 H 0.100 0.900 23 H 0.066 0.934 24 H 0.286 0.714 25 H 0.157 0.843 26 H 0.202 0.798 27 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.785 -15.121 3.165 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.158 5.158 3 C -0.522 4.522 4 H 0.087 0.913 5 C -0.154 4.154 6 N -0.451 5.451 7 Si 0.763 3.237 8 H -0.206 1.206 9 H -0.192 1.192 10 H -0.188 1.188 11 C 0.274 3.726 12 O -0.498 6.498 13 C -0.193 4.193 14 C -0.036 4.036 15 C -0.320 4.320 16 I 0.164 6.836 17 C 0.014 3.986 18 N -0.225 5.225 19 C 0.179 3.821 20 O -0.292 6.292 21 H 0.069 0.931 22 H 0.118 0.882 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.175 0.825 26 H 0.218 0.782 27 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -12.543 -15.543 2.804 20.169 hybrid contribution 1.742 1.482 -0.042 2.287 sum -10.801 -14.061 2.761 17.944 Atomic orbital electron populations 1.22858 0.80817 1.03068 1.02368 1.43470 1.06122 1.04387 1.61799 1.18898 1.12288 0.91453 1.29584 0.91309 1.26002 0.97186 0.97119 0.95133 1.70067 1.17463 1.25449 1.32170 0.85798 0.80499 0.78056 0.79372 1.20563 1.19236 1.18766 1.18072 0.86900 0.83599 0.83991 1.90557 1.15475 1.87244 1.56541 1.21231 0.98394 0.97161 1.02473 1.22015 0.90917 0.96079 0.94540 1.25517 1.02042 0.97532 1.06893 1.96830 1.12786 1.95482 1.78533 1.23163 0.88489 0.98718 0.88183 1.67457 1.10435 1.21374 1.23259 1.19240 0.88188 0.87419 0.87209 1.84582 1.13933 1.85570 1.45076 0.93106 0.88199 0.91573 0.90322 0.82543 0.78162 0.71695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.21 8.57 127.77 1.10 3.30 15 2 N -0.44 -22.77 2.99 -662.67 -1.98 -24.75 15 3 C -0.40 -22.49 8.75 84.09 0.74 -21.76 15 4 H 0.07 4.21 7.92 -2.91 -0.02 4.19 15 5 C 0.06 2.97 5.28 84.95 0.45 3.42 15 6 N -0.82 -40.74 10.87 21.68 0.24 -40.50 15 7 Si 0.94 41.44 29.69 68.60 2.04 43.47 15 8 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 9 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 10 H -0.26 -10.74 7.11 99.48 0.71 -10.04 15 11 C 0.48 24.38 7.10 86.66 0.62 24.99 15 12 O -0.61 -34.48 16.08 10.48 0.17 -34.31 15 13 C -0.18 -7.29 5.33 -19.91 -0.11 -7.40 15 14 C -0.01 -0.23 7.20 22.74 0.16 -0.07 15 15 C -0.18 -4.51 6.21 22.35 0.14 -4.37 15 16 I 0.02 0.33 40.29 -18.82 -0.76 -0.42 15 17 C 0.18 4.28 10.90 84.73 0.92 5.21 15 18 N -0.51 -15.77 10.37 -307.89 -3.19 -18.96 15 19 C 0.36 13.27 7.74 85.15 0.66 13.92 15 20 O -0.48 -18.18 12.37 -72.78 -0.90 -19.08 15 21 H 0.05 2.05 7.81 -2.39 -0.02 2.03 15 22 H 0.10 4.68 5.21 -2.39 -0.01 4.66 15 23 H 0.07 2.47 4.55 -2.39 -0.01 2.46 15 24 H 0.29 12.90 8.31 -92.71 -0.77 12.13 15 25 H 0.16 4.87 5.79 -2.91 -0.02 4.85 15 26 H 0.20 3.32 8.06 -2.91 -0.02 3.30 15 27 H 0.42 12.59 9.06 -74.05 -0.67 11.92 15 Total: -1.00 -65.86 267.79 0.85 -65.00 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.57 Total: 12.29 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 4.67 Total: 17.25 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -4.94 Total: -84.21 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -0.73 Total: -53.39 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.04 Total: 43.47 kcal Atomic # 53 Polarization: 0.33 SS G_CDS: -0.76 Total: -0.42 kcal Total: -65.86 0.85 -65.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190609156.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.177 kcal (2) G-P(sol) polarization free energy of solvation -65.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds