Wall clock time and date at job start Wed Apr 1 2020 05:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99936 * 2 1 4 4 H 1.48501 * 109.47109 * 270.00436 * 3 2 1 5 5 H 1.48496 * 109.47161 * 30.00439 * 3 2 1 6 6 H 1.48501 * 109.47394 * 150.00571 * 3 2 1 7 7 C 1.37878 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99958 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00013 * 179.97438 * 7 2 1 10 10 O 1.42098 * 106.40496 * 293.53880 * 9 7 2 11 11 O 1.42099 * 106.40200 * 66.45964 * 9 7 2 12 12 N 1.65605 * 107.22024 * 179.97438 * 9 7 2 13 13 C 1.38910 * 119.99839 * 68.08442 * 12 9 7 14 14 C 1.38951 * 120.16592 * 324.41007 * 13 12 9 15 15 C 1.37954 * 120.07724 * 179.74467 * 14 13 12 16 16 C 1.38694 * 120.40849 * 0.55915 * 15 14 13 17 17 Br 1.89101 * 119.83243 * 179.71584 * 16 15 14 18 18 C 1.37825 * 120.33228 * 359.70267 * 16 15 14 19 19 C 1.39739 * 119.91858 * 0.02562 * 18 16 15 20 20 C 1.47426 * 120.20736 * 179.97438 * 19 18 16 21 21 N 1.34781 * 119.99832 * 0.02562 * 20 19 18 22 22 O 1.21601 * 120.00510 * 180.02562 * 20 19 18 23 23 H 0.96998 * 119.99629 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00033 * 248.08734 * 12 9 7 25 25 H 1.08001 * 119.96336 * 0.02634 * 14 13 12 26 26 H 1.07995 * 119.79913 * 180.25877 * 15 14 13 27 27 H 1.07994 * 120.04147 * 180.02562 * 18 16 15 28 28 H 0.97002 * 119.99811 * 0.02562 * 21 20 19 29 29 H 0.97003 * 120.00383 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1940 -0.0012 10 8 4.1674 -0.6494 -1.2510 11 8 4.1683 -0.6499 1.2485 12 7 4.2568 -2.7758 -0.0011 13 6 4.0331 -3.5724 -1.1169 14 6 2.8765 -3.4107 -1.8696 15 6 2.6586 -4.1992 -2.9805 16 6 3.5836 -5.1651 -3.3481 17 35 3.2647 -6.2424 -4.8692 18 6 4.7341 -5.3436 -2.6104 19 6 4.9713 -4.5486 -1.4859 20 6 6.1996 -4.7345 -0.6920 21 7 7.0980 -5.6730 -1.0503 22 8 6.4021 -4.0410 0.2862 23 1 -0.4849 0.8401 0.0004 24 1 4.7002 -3.1461 0.7782 25 1 2.1492 -2.6638 -1.5874 26 1 1.7601 -4.0669 -3.5647 27 1 5.4513 -6.0968 -2.9011 28 1 6.9367 -6.2260 -1.8308 29 1 7.9064 -5.7951 -0.5282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972359.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:35 Heat of formation + Delta-G solvation = -82.201578 kcal Electronic energy + Delta-G solvation = -20574.361781 eV Core-core repulsion = 17056.791769 eV Total energy + Delta-G solvation = -3517.570013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.35930 -38.26407 -35.84342 -35.16287 -34.61376 -33.72511 -33.21725 -31.25044 -31.04956 -28.03037 -26.63556 -24.21572 -22.43251 -20.77444 -19.14101 -18.45753 -17.66463 -17.12829 -16.90818 -16.74735 -15.39457 -15.12000 -14.86879 -14.63142 -14.50868 -13.88516 -13.56447 -13.47822 -13.11494 -12.91799 -12.28973 -12.00703 -11.62837 -11.48523 -11.09971 -10.94619 -10.78421 -10.61477 -10.40000 -10.19974 -10.03214 -9.82644 -9.78077 -9.31129 -9.12691 -9.05819 -7.99059 -6.94168 -5.52670 0.80752 1.18258 1.59364 1.79103 2.82284 3.00670 3.10894 3.20407 3.40717 3.74778 3.86037 4.00185 4.45093 4.62618 4.69634 5.04784 5.15050 5.26852 5.36414 5.59882 5.82789 5.97495 6.13242 6.26576 6.52151 6.65349 6.80554 7.20058 7.31932 7.56438 7.99625 8.19003 8.53511 10.16247 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.004584 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.040205 B = 6107.371863 C = 7644.540164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.157 3.843 3 Si 0.799 3.201 4 H -0.243 1.243 5 H -0.252 1.252 6 H -0.221 1.221 7 C -1.022 5.022 8 H 0.132 0.868 9 S 2.659 3.341 10 O -0.994 6.994 11 O -0.992 6.992 12 N -1.041 6.041 13 C 0.277 3.723 14 C -0.174 4.174 15 C -0.025 4.025 16 C -0.135 4.135 17 Br -0.057 7.057 18 C -0.031 4.031 19 C -0.189 4.189 20 C 0.573 3.427 21 N -0.852 5.852 22 O -0.536 6.536 23 H 0.284 0.716 24 H 0.431 0.569 25 H 0.182 0.818 26 H 0.143 0.857 27 H 0.134 0.866 28 H 0.400 0.600 29 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -15.224 -9.171 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.064 4.064 3 Si 0.619 3.381 4 H -0.167 1.167 5 H -0.176 1.176 6 H -0.143 1.143 7 C -1.156 5.156 8 H 0.149 0.851 9 S 2.761 3.239 10 O -0.983 6.983 11 O -0.982 6.982 12 N -0.786 5.786 13 C 0.173 3.827 14 C -0.195 4.195 15 C -0.045 4.045 16 C -0.215 4.215 17 Br 0.028 6.972 18 C -0.053 4.053 19 C -0.198 4.198 20 C 0.360 3.640 21 N -0.416 5.416 22 O -0.413 6.413 23 H 0.094 0.906 24 H 0.273 0.727 25 H 0.199 0.801 26 H 0.161 0.839 27 H 0.152 0.848 28 H 0.229 0.771 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.114 -14.137 -9.150 18.280 hybrid contribution 0.120 0.124 0.466 0.497 sum 7.234 -14.012 -8.684 18.002 Atomic orbital electron populations 1.69964 1.06467 1.29414 1.38210 1.24369 0.94811 0.98736 0.88475 0.87879 0.83648 0.84468 0.82124 1.16673 1.17601 1.14277 1.30442 1.14770 1.02610 1.67763 0.85077 1.02162 0.77860 0.70113 0.73772 1.93459 1.85034 1.74866 1.44989 1.93506 1.85505 1.74494 1.44711 1.53977 1.71894 1.31223 1.21542 1.17488 0.90555 0.88441 0.86191 1.22196 0.97112 1.03478 0.96747 1.21133 0.97721 0.91211 0.94481 1.21465 0.99860 1.02297 0.97885 1.96659 1.96379 1.67285 1.36885 1.20898 0.95288 0.96888 0.92196 1.19572 0.96592 1.03945 0.99731 1.17975 0.82873 0.79368 0.83739 1.43683 1.24668 1.39437 1.33852 1.90716 1.77132 1.45725 1.27748 0.90561 0.72730 0.80139 0.83889 0.84799 0.77066 0.76440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.08 13.96 55.43 0.77 -21.30 15 2 C 0.16 4.29 5.47 -17.82 -0.10 4.19 15 3 Si 0.80 19.91 26.54 -169.99 -4.51 15.40 15 4 H -0.24 -5.89 7.11 56.52 0.40 -5.49 15 5 H -0.25 -5.76 7.11 56.52 0.40 -5.36 15 6 H -0.22 -5.71 5.61 56.52 0.32 -5.39 15 7 C -1.02 -26.86 8.19 30.60 0.25 -26.61 15 8 H 0.13 3.35 7.01 -52.49 -0.37 2.99 15 9 S 2.66 66.96 3.87 -107.50 -0.42 66.54 15 10 O -0.99 -26.37 16.30 -57.17 -0.93 -27.30 15 11 O -0.99 -27.14 16.02 -57.17 -0.92 -28.05 15 12 N -1.04 -21.84 5.07 32.55 0.16 -21.67 15 13 C 0.28 5.18 6.15 -83.60 -0.51 4.66 15 14 C -0.17 -3.13 9.03 -39.42 -0.36 -3.49 15 15 C -0.02 -0.36 9.76 -39.52 -0.39 -0.75 15 16 C -0.13 -1.73 6.22 -39.56 -0.25 -1.98 15 17 Br -0.06 -0.60 33.69 -68.01 -2.29 -2.90 15 18 C -0.03 -0.38 9.26 -39.17 -0.36 -0.74 15 19 C -0.19 -2.90 5.89 -104.81 -0.62 -3.51 15 20 C 0.57 8.40 8.03 -12.52 -0.10 8.29 15 21 N -0.85 -7.71 8.82 30.43 0.27 -7.44 15 22 O -0.54 -9.85 14.75 5.28 0.08 -9.77 15 23 H 0.28 7.02 8.31 -40.82 -0.34 6.68 15 24 H 0.43 8.60 6.56 -34.47 -0.23 8.37 15 25 H 0.18 3.63 4.42 -52.49 -0.23 3.40 15 26 H 0.14 1.79 8.06 -52.49 -0.42 1.37 15 27 H 0.13 1.08 6.40 -52.49 -0.34 0.75 15 28 H 0.40 2.38 6.86 -40.82 -0.28 2.10 15 29 H 0.40 2.99 8.93 -40.82 -0.36 2.63 15 LS Contribution 283.38 15.07 4.27 4.27 Total: -1.00 -32.72 283.38 -7.39 -40.11 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -1.45 Total: 12.04 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -2.43 Total: -19.93 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 1.21 Total: -50.41 kcal Atomic # 8 Polarization: -63.36 SS G_CDS: -1.77 Total: -65.13 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.51 Total: 15.40 kcal Atomic # 16 Polarization: 66.96 SS G_CDS: -0.42 Total: 66.54 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.72 -7.39 -40.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972359.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.092 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds