Wall clock time and date at job start Wed Apr 1 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99936 * 2 1 4 4 H 1.48501 * 109.47109 * 270.00436 * 3 2 1 5 5 H 1.48496 * 109.47161 * 30.00439 * 3 2 1 6 6 H 1.48501 * 109.47394 * 150.00571 * 3 2 1 7 7 C 1.37878 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99958 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00013 * 179.97438 * 7 2 1 10 10 O 1.42098 * 106.40496 * 293.53880 * 9 7 2 11 11 O 1.42099 * 106.40200 * 66.45964 * 9 7 2 12 12 N 1.65605 * 107.22024 * 179.97438 * 9 7 2 13 13 C 1.38910 * 119.99839 * 68.08442 * 12 9 7 14 14 C 1.38951 * 120.16592 * 324.41007 * 13 12 9 15 15 C 1.37954 * 120.07724 * 179.74467 * 14 13 12 16 16 C 1.38694 * 120.40849 * 0.55915 * 15 14 13 17 17 Br 1.89101 * 119.83243 * 179.71584 * 16 15 14 18 18 C 1.37825 * 120.33228 * 359.70267 * 16 15 14 19 19 C 1.39739 * 119.91858 * 0.02562 * 18 16 15 20 20 C 1.47426 * 120.20736 * 179.97438 * 19 18 16 21 21 N 1.34781 * 119.99832 * 0.02562 * 20 19 18 22 22 O 1.21601 * 120.00510 * 180.02562 * 20 19 18 23 23 H 0.96998 * 119.99629 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00033 * 248.08734 * 12 9 7 25 25 H 1.08001 * 119.96336 * 0.02634 * 14 13 12 26 26 H 1.07995 * 119.79913 * 180.25877 * 15 14 13 27 27 H 1.07994 * 120.04147 * 180.02562 * 18 16 15 28 28 H 0.97002 * 119.99811 * 0.02562 * 21 20 19 29 29 H 0.97003 * 120.00383 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1940 -0.0012 10 8 4.1674 -0.6494 -1.2510 11 8 4.1683 -0.6499 1.2485 12 7 4.2568 -2.7758 -0.0011 13 6 4.0331 -3.5724 -1.1169 14 6 2.8765 -3.4107 -1.8696 15 6 2.6586 -4.1992 -2.9805 16 6 3.5836 -5.1651 -3.3481 17 35 3.2647 -6.2424 -4.8692 18 6 4.7341 -5.3436 -2.6104 19 6 4.9713 -4.5486 -1.4859 20 6 6.1996 -4.7345 -0.6920 21 7 7.0980 -5.6730 -1.0503 22 8 6.4021 -4.0410 0.2862 23 1 -0.4849 0.8401 0.0004 24 1 4.7002 -3.1461 0.7782 25 1 2.1492 -2.6638 -1.5874 26 1 1.7601 -4.0669 -3.5647 27 1 5.4513 -6.0968 -2.9011 28 1 6.9367 -6.2260 -1.8308 29 1 7.9064 -5.7951 -0.5282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972359.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:34 Heat of formation + Delta-G solvation = -110.229862 kcal Electronic energy + Delta-G solvation = -20575.577179 eV Core-core repulsion = 17056.791769 eV Total energy + Delta-G solvation = -3518.785410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55203 -39.45397 -37.86264 -36.68602 -36.53462 -35.28553 -34.80378 -32.38448 -32.19174 -29.29144 -28.63505 -25.38918 -23.74584 -21.94731 -20.94982 -20.02016 -19.17112 -18.76310 -18.37223 -17.93561 -17.23076 -16.36698 -16.27691 -16.05923 -15.81615 -15.56568 -15.34268 -15.06287 -14.51285 -14.36658 -13.91962 -13.49330 -13.27480 -13.01096 -12.96654 -12.86344 -12.66465 -12.38402 -11.87700 -11.44694 -11.38141 -11.35701 -11.14559 -10.93711 -10.78487 -10.23295 -9.28777 -9.01025 -7.59678 -0.41312 -0.16073 0.06286 0.55571 1.03215 1.11981 1.19641 1.66218 1.86528 2.23244 2.37553 2.43162 2.55297 3.15335 3.58553 3.65580 3.81265 3.93018 4.13175 4.23903 4.38367 4.75573 4.89565 5.00408 5.16613 5.31993 5.51675 5.78676 5.94267 6.07606 6.34310 6.45692 7.23817 8.14480 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.004584 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.040205 B = 6107.371863 C = 7644.540164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.121 3.879 3 Si 0.814 3.186 4 H -0.235 1.235 5 H -0.216 1.216 6 H -0.239 1.239 7 C -1.030 5.030 8 H 0.127 0.873 9 S 2.677 3.323 10 O -1.013 7.013 11 O -1.021 7.021 12 N -1.038 6.038 13 C 0.236 3.764 14 C -0.199 4.199 15 C -0.022 4.022 16 C -0.131 4.131 17 Br -0.023 7.023 18 C -0.012 4.012 19 C -0.188 4.188 20 C 0.568 3.432 21 N -0.820 5.820 22 O -0.581 6.581 23 H 0.295 0.705 24 H 0.433 0.567 25 H 0.153 0.847 26 H 0.160 0.840 27 H 0.183 0.817 28 H 0.419 0.581 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 -17.332 -11.061 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.098 4.098 3 Si 0.631 3.369 4 H -0.158 1.158 5 H -0.138 1.138 6 H -0.162 1.162 7 C -1.163 5.163 8 H 0.144 0.856 9 S 2.779 3.221 10 O -1.003 7.003 11 O -1.011 7.011 12 N -0.788 5.788 13 C 0.134 3.866 14 C -0.221 4.221 15 C -0.043 4.043 16 C -0.212 4.212 17 Br 0.062 6.938 18 C -0.033 4.033 19 C -0.197 4.197 20 C 0.354 3.646 21 N -0.385 5.385 22 O -0.462 6.462 23 H 0.106 0.894 24 H 0.276 0.724 25 H 0.170 0.830 26 H 0.178 0.822 27 H 0.200 0.800 28 H 0.252 0.748 29 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 8.171 -16.288 -11.086 21.330 hybrid contribution -0.190 0.524 0.886 1.046 sum 7.981 -15.763 -10.201 20.402 Atomic orbital electron populations 1.69965 1.06950 1.30703 1.38856 1.24939 0.95544 1.00713 0.88619 0.87643 0.82765 0.83598 0.82851 1.15793 1.13754 1.16162 1.30706 1.15823 1.02552 1.67260 0.85567 1.01362 0.77072 0.70922 0.72790 1.93414 1.85045 1.76289 1.45535 1.93457 1.85644 1.76247 1.45770 1.53391 1.72273 1.30154 1.22936 1.17816 0.92239 0.90226 0.86301 1.22003 0.96996 1.04450 0.98676 1.21324 0.98771 0.90795 0.93370 1.21697 0.99291 1.01576 0.98612 1.96714 1.96329 1.65908 1.34804 1.21364 0.95563 0.96276 0.90053 1.19745 0.96209 1.03169 1.00560 1.18008 0.83367 0.79985 0.83212 1.43399 1.23659 1.37440 1.33985 1.90698 1.78005 1.47790 1.29684 0.89449 0.72387 0.83012 0.82204 0.80007 0.74835 0.74976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.98 13.96 21.45 0.30 -45.68 15 2 C 0.12 6.72 5.47 84.65 0.46 7.18 15 3 Si 0.81 40.34 26.54 68.60 1.82 42.17 15 4 H -0.23 -11.22 7.11 99.48 0.71 -10.51 15 5 H -0.22 -9.36 7.11 99.48 0.71 -8.65 15 6 H -0.24 -12.54 5.61 99.48 0.56 -11.98 15 7 C -1.03 -56.18 8.19 67.73 0.56 -55.62 15 8 H 0.13 6.82 7.01 -2.91 -0.02 6.80 15 9 S 2.68 139.59 3.87 -56.49 -0.22 139.37 15 10 O -1.01 -55.31 16.30 -128.00 -2.09 -57.39 15 11 O -1.02 -57.79 16.02 -128.00 -2.05 -59.84 15 12 N -1.04 -45.13 5.07 -50.93 -0.26 -45.39 15 13 C 0.24 8.92 6.15 38.70 0.24 9.16 15 14 C -0.20 -7.34 9.03 22.37 0.20 -7.14 15 15 C -0.02 -0.62 9.76 22.31 0.22 -0.40 15 16 C -0.13 -2.98 6.22 22.28 0.14 -2.85 15 17 Br -0.02 -0.40 33.69 -20.37 -0.69 -1.08 15 18 C -0.01 -0.24 9.26 22.53 0.21 -0.04 15 19 C -0.19 -5.45 5.89 -19.98 -0.12 -5.57 15 20 C 0.57 15.65 8.03 86.66 0.70 16.35 15 21 N -0.82 -11.96 8.82 -175.88 -1.55 -13.52 15 22 O -0.58 -21.29 14.75 -4.03 -0.06 -21.35 15 23 H 0.29 14.60 8.31 -92.71 -0.77 13.83 15 24 H 0.43 18.06 6.56 -96.74 -0.63 17.42 15 25 H 0.15 6.47 4.42 -2.91 -0.01 6.45 15 26 H 0.16 3.81 8.06 -2.91 -0.02 3.78 15 27 H 0.18 1.89 6.40 -2.91 -0.02 1.87 15 28 H 0.42 2.92 6.86 -92.71 -0.64 2.28 15 29 H 0.42 4.77 8.93 -92.71 -0.83 3.95 15 Total: -1.00 -73.25 283.38 -3.16 -76.41 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.97 Total: 25.23 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 2.60 Total: -38.93 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -1.51 Total: -104.59 kcal Atomic # 8 Polarization: -134.39 SS G_CDS: -4.20 Total: -138.58 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.82 Total: 42.17 kcal Atomic # 16 Polarization: 139.59 SS G_CDS: -0.22 Total: 139.37 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -0.69 Total: -1.08 kcal Total: -73.25 -3.16 -76.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972359.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.818 kcal (2) G-P(sol) polarization free energy of solvation -73.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds