Wall clock time and date at job start Wed Apr 1 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39961 * 120.21937 * 229.29417 * 3 2 1 5 5 F 1.35107 * 120.07937 * 0.02730 * 4 3 2 6 6 C 1.38191 * 119.84504 * 180.25267 * 4 3 2 7 7 Br 1.89105 * 119.84859 * 179.77206 * 6 4 3 8 8 C 1.38519 * 120.29762 * 359.79838 * 6 4 3 9 9 C 1.38082 * 120.45409 * 359.97438 * 8 6 4 10 10 C 1.38824 * 120.14213 * 359.97438 * 9 8 6 11 11 N 1.39078 * 120.14877 * 179.97438 * 10 9 8 12 12 S 1.65597 * 119.99771 * 327.55379 * 11 10 9 13 13 O 1.42097 * 106.40398 * 314.13581 * 12 11 10 14 14 O 1.42103 * 106.40270 * 181.21077 * 12 11 10 15 15 C 1.76203 * 107.21784 * 67.67652 * 12 11 10 16 16 H 1.08001 * 119.99894 * 359.97438 * 15 12 11 17 17 C 1.37882 * 119.99871 * 179.72361 * 15 12 11 18 18 N 1.31511 * 119.99908 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99860 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46962 * 90.00068 * 19 17 15 21 21 H 1.48489 * 109.47019 * 209.99806 * 19 17 15 22 22 H 1.48497 * 109.47183 * 330.00155 * 19 17 15 23 23 H 1.08000 * 119.77061 * 179.97438 * 8 6 4 24 24 H 1.08000 * 119.93097 * 179.97438 * 9 8 6 25 25 H 0.96993 * 119.99729 * 147.55438 * 11 10 9 26 26 H 0.97004 * 119.99353 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2721 0.7897 0.9168 5 9 2.6023 1.5544 1.8068 6 6 4.6539 0.7884 0.9065 7 35 5.6053 1.8595 2.1410 8 6 5.3453 0.0066 -0.0043 9 6 4.6631 -0.7801 -0.9111 10 6 3.2750 -0.7938 -0.9165 11 7 2.5878 -1.5857 -1.8302 12 16 3.2270 -1.8608 -3.3328 13 8 3.6747 -0.6013 -3.8152 14 8 2.2871 -2.6695 -4.0269 15 6 4.6683 -2.8504 -3.1133 16 1 4.9693 -3.1534 -2.1214 17 6 5.4089 -3.2421 -4.2084 18 7 5.0399 -2.8767 -5.4166 19 14 6.9373 -4.2907 -3.9756 20 1 6.5643 -5.7272 -4.0256 21 1 7.9104 -3.9941 -5.0572 22 1 7.5519 -3.9843 -2.6590 23 1 6.4253 0.0124 -0.0051 24 1 5.2107 -1.3861 -1.6178 25 1 1.7341 -1.9769 -1.5873 26 1 5.5608 -3.1527 -6.1870 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192982109.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:40 Heat of formation + Delta-G solvation = -74.183083 kcal Electronic energy + Delta-G solvation = -19852.447366 eV Core-core repulsion = 16211.764756 eV Total energy + Delta-G solvation = -3640.682610 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 347.937 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.25201 -39.77361 -36.50365 -35.69198 -35.09237 -34.39669 -33.41349 -31.66641 -31.16356 -28.26550 -26.55400 -24.29702 -22.66503 -19.53857 -19.21717 -18.19297 -18.02286 -17.07500 -16.19986 -16.00445 -15.81129 -15.20856 -14.94232 -14.39104 -13.94841 -13.81630 -13.60786 -13.37752 -12.99041 -12.75833 -12.33999 -12.24955 -11.97017 -11.68908 -11.40561 -11.26416 -10.97459 -10.75898 -10.69796 -10.61005 -10.43939 -10.25476 -9.49236 -9.15266 -9.08733 -8.26485 -6.98790 -5.67084 0.48378 0.81571 1.35620 1.70143 2.57501 2.75610 2.92104 3.00196 3.04229 3.51323 3.61879 3.71553 3.87142 4.09706 4.36378 4.59543 4.90594 4.98475 5.25105 5.37298 5.64339 5.80294 5.88310 6.04085 6.27420 6.49059 7.02416 7.17780 7.39632 7.60281 8.57294 9.95809 Molecular weight = 347.94amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.004555 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.292094 B = 6144.952913 C = 7725.795104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.261 3.739 3 C -0.109 4.109 4 C 0.199 3.801 5 F -0.114 7.114 6 C -0.170 4.170 7 Br -0.029 7.029 8 C 0.004 3.996 9 C -0.177 4.177 10 C 0.295 3.705 11 N -1.061 6.061 12 S 2.687 3.313 13 O -0.978 6.978 14 O -0.984 6.984 15 C -1.023 5.023 16 H 0.115 0.885 17 C 0.135 3.865 18 N -0.835 5.835 19 Si 0.925 3.075 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.258 1.258 23 H 0.157 0.843 24 H 0.188 0.812 25 H 0.419 0.581 26 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 5.487 13.779 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.055 4.055 3 C -0.119 4.119 4 C 0.174 3.826 5 F -0.092 7.092 6 C -0.251 4.251 7 Br 0.056 6.944 8 C -0.017 4.017 9 C -0.199 4.199 10 C 0.189 3.811 11 N -0.797 5.797 12 S 2.788 3.212 13 O -0.968 6.968 14 O -0.974 6.974 15 C -1.157 5.157 16 H 0.133 0.867 17 C -0.085 4.085 18 N -0.464 5.464 19 Si 0.748 3.252 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.181 1.181 23 H 0.174 0.826 24 H 0.205 0.795 25 H 0.254 0.746 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.521 6.284 13.112 14.960 hybrid contribution 0.720 -1.118 0.354 1.376 sum 4.242 5.166 13.466 15.034 Atomic orbital electron populations 1.81225 1.11396 1.07652 1.07705 1.24990 0.91950 0.94393 0.94133 1.15620 0.85229 1.06392 1.04648 1.16858 0.88137 0.90069 0.87508 1.91580 1.80272 1.72360 1.65030 1.21562 0.91819 1.07543 1.04223 1.96724 1.73793 1.67125 1.56770 1.21037 1.01126 0.89808 0.89767 1.22091 0.91742 1.03306 1.02723 1.17221 0.91017 0.86369 0.86483 1.54704 1.32987 1.58593 1.33427 1.01712 0.75521 0.74889 0.69102 1.93445 1.82485 1.45072 1.75768 1.93430 1.65607 1.70118 1.68287 1.30429 1.31149 1.52365 1.01730 0.86710 1.24772 0.98096 0.92539 0.93136 1.69874 1.38699 1.38376 0.99406 0.86066 0.79620 0.80017 0.79460 1.19041 1.19770 1.18141 0.82570 0.79527 0.74637 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.94 18.54 41.84 0.78 -6.17 15 2 C 0.26 4.17 14.02 -22.47 -0.32 3.86 15 3 C -0.11 -1.62 5.76 -106.52 -0.61 -2.24 15 4 C 0.20 2.69 7.24 -38.95 -0.28 2.41 15 5 F -0.11 -1.54 16.26 2.25 0.04 -1.51 15 6 C -0.17 -2.09 6.22 -39.50 -0.25 -2.33 15 7 Br -0.03 -0.31 33.26 -68.01 -2.26 -2.57 15 8 C 0.00 0.04 9.76 -39.53 -0.39 -0.34 15 9 C -0.18 -2.65 8.89 -39.42 -0.35 -3.00 15 10 C 0.30 4.76 6.20 -83.55 -0.52 4.24 15 11 N -1.06 -19.13 5.50 32.57 0.18 -18.95 15 12 S 2.69 63.34 4.62 -107.50 -0.50 62.84 15 13 O -0.98 -25.34 17.41 -57.17 -1.00 -26.34 15 14 O -0.98 -26.40 18.02 -57.17 -1.03 -27.43 15 15 C -1.02 -23.72 7.56 30.60 0.23 -23.49 15 16 H 0.11 2.29 6.91 -52.49 -0.36 1.92 15 17 C 0.13 3.27 5.46 -17.82 -0.10 3.17 15 18 N -0.84 -21.95 13.19 55.43 0.73 -21.22 15 19 Si 0.93 17.80 29.54 -169.99 -5.02 12.78 15 20 H -0.27 -5.07 7.11 56.52 0.40 -4.66 15 21 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 22 H -0.26 -4.61 7.11 56.52 0.40 -4.21 15 23 H 0.16 1.42 8.06 -52.49 -0.42 1.00 15 24 H 0.19 3.02 4.47 -52.49 -0.23 2.79 15 25 H 0.42 6.68 8.24 -34.47 -0.28 6.39 15 26 H 0.30 6.98 8.31 -40.82 -0.34 6.64 15 LS Contribution 284.76 15.07 4.29 4.29 Total: -1.00 -30.03 284.76 -6.81 -36.83 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -0.44 Total: 5.15 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -2.58 Total: -17.72 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 1.69 Total: -46.34 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -2.03 Total: -53.77 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.02 Total: 12.78 kcal Atomic # 16 Polarization: 63.34 SS G_CDS: -0.50 Total: 62.84 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.26 Total: -2.57 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.03 -6.81 -36.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982109.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.349 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds