Wall clock time and date at job start Wed Apr 1 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39961 * 120.21937 * 229.29417 * 3 2 1 5 5 F 1.35107 * 120.07937 * 0.02730 * 4 3 2 6 6 C 1.38191 * 119.84504 * 180.25267 * 4 3 2 7 7 Br 1.89105 * 119.84859 * 179.77206 * 6 4 3 8 8 C 1.38519 * 120.29762 * 359.79838 * 6 4 3 9 9 C 1.38082 * 120.45409 * 359.97438 * 8 6 4 10 10 C 1.38824 * 120.14213 * 359.97438 * 9 8 6 11 11 N 1.39078 * 120.14877 * 179.97438 * 10 9 8 12 12 S 1.65597 * 119.99771 * 327.55379 * 11 10 9 13 13 O 1.42097 * 106.40398 * 314.13581 * 12 11 10 14 14 O 1.42103 * 106.40270 * 181.21077 * 12 11 10 15 15 C 1.76203 * 107.21784 * 67.67652 * 12 11 10 16 16 H 1.08001 * 119.99894 * 359.97438 * 15 12 11 17 17 C 1.37882 * 119.99871 * 179.72361 * 15 12 11 18 18 N 1.31511 * 119.99908 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99860 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46962 * 90.00068 * 19 17 15 21 21 H 1.48489 * 109.47019 * 209.99806 * 19 17 15 22 22 H 1.48497 * 109.47183 * 330.00155 * 19 17 15 23 23 H 1.08000 * 119.77061 * 179.97438 * 8 6 4 24 24 H 1.08000 * 119.93097 * 179.97438 * 9 8 6 25 25 H 0.96993 * 119.99729 * 147.55438 * 11 10 9 26 26 H 0.97004 * 119.99353 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2721 0.7897 0.9168 5 9 2.6023 1.5544 1.8068 6 6 4.6539 0.7884 0.9065 7 35 5.6053 1.8595 2.1410 8 6 5.3453 0.0066 -0.0043 9 6 4.6631 -0.7801 -0.9111 10 6 3.2750 -0.7938 -0.9165 11 7 2.5878 -1.5857 -1.8302 12 16 3.2270 -1.8608 -3.3328 13 8 3.6747 -0.6013 -3.8152 14 8 2.2871 -2.6695 -4.0269 15 6 4.6683 -2.8504 -3.1133 16 1 4.9693 -3.1534 -2.1214 17 6 5.4089 -3.2421 -4.2084 18 7 5.0399 -2.8767 -5.4166 19 14 6.9373 -4.2907 -3.9756 20 1 6.5643 -5.7272 -4.0256 21 1 7.9104 -3.9941 -5.0572 22 1 7.5519 -3.9843 -2.6590 23 1 6.4253 0.0124 -0.0051 24 1 5.2107 -1.3861 -1.6178 25 1 1.7341 -1.9769 -1.5873 26 1 5.5608 -3.1527 -6.1870 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192982109.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:40 Heat of formation + Delta-G solvation = -95.515219 kcal Electronic energy + Delta-G solvation = -19853.372397 eV Core-core repulsion = 16211.764756 eV Total energy + Delta-G solvation = -3641.607640 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 347.937 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.35312 -40.96984 -37.81995 -37.59502 -36.44744 -36.32689 -35.22021 -32.79898 -32.27271 -29.42988 -28.36229 -25.45916 -23.89985 -21.18860 -20.52647 -19.74027 -19.31131 -18.66583 -17.64954 -17.21652 -17.03753 -16.86632 -16.13845 -15.99687 -15.69822 -15.15271 -14.82699 -14.60120 -14.24497 -14.04653 -13.92466 -13.69123 -13.17069 -13.07196 -12.96401 -12.82995 -12.67338 -12.60472 -12.45400 -12.18810 -11.41479 -11.36270 -11.21251 -10.91192 -10.21724 -9.46647 -8.77058 -7.53550 -0.66705 -0.33632 -0.03580 0.35726 1.29625 1.44339 1.45927 1.55882 1.62390 2.19948 2.31399 2.42845 2.46361 2.60154 2.77596 3.45618 3.50312 3.75420 3.76780 4.07558 4.21816 4.61730 4.68223 4.81573 4.94056 5.25180 5.35315 5.77689 5.86964 6.11935 6.75376 8.19960 Molecular weight = 347.94amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.004555 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.292094 B = 6144.952913 C = 7725.795104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.270 3.730 3 C -0.109 4.109 4 C 0.203 3.797 5 F -0.113 7.113 6 C -0.163 4.163 7 Br -0.004 7.004 8 C 0.025 3.975 9 C -0.188 4.188 10 C 0.274 3.726 11 N -1.055 6.055 12 S 2.692 3.308 13 O -1.011 7.011 14 O -1.029 7.029 15 C -1.025 5.025 16 H 0.146 0.854 17 C 0.078 3.922 18 N -0.889 5.889 19 Si 0.992 3.008 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.228 1.228 23 H 0.193 0.807 24 H 0.178 0.822 25 H 0.427 0.573 26 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.688 5.541 15.969 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.045 4.045 3 C -0.120 4.120 4 C 0.178 3.822 5 F -0.091 7.091 6 C -0.245 4.245 7 Br 0.081 6.919 8 C 0.005 3.995 9 C -0.209 4.209 10 C 0.169 3.831 11 N -0.796 5.796 12 S 2.795 3.205 13 O -1.001 7.001 14 O -1.020 7.020 15 C -1.159 5.159 16 H 0.163 0.837 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.809 3.191 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.150 1.150 23 H 0.210 0.790 24 H 0.195 0.805 25 H 0.263 0.737 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.932 6.370 15.332 17.631 hybrid contribution -0.026 -1.017 -0.186 1.034 sum 5.906 5.353 15.146 17.116 Atomic orbital electron populations 1.81226 1.12140 1.08571 1.08607 1.25189 0.92196 0.93685 0.93410 1.15552 0.84530 1.06829 1.05046 1.16876 0.88617 0.89636 0.87085 1.91590 1.80406 1.72208 1.64866 1.21750 0.91433 1.07083 1.04225 1.96777 1.72959 1.66364 1.55761 1.21384 1.02694 0.87664 0.87774 1.22080 0.91152 1.04250 1.03464 1.17371 0.91610 0.87161 0.86908 1.53969 1.33474 1.59614 1.32572 1.01191 0.75438 0.74231 0.69617 1.93389 1.82911 1.46390 1.77429 1.93366 1.66973 1.70929 1.70686 1.30705 1.30290 1.51706 1.03234 0.83654 1.26004 1.01579 0.93556 0.92569 1.69987 1.40728 1.40504 1.00738 0.85087 0.75370 0.77748 0.80848 1.18858 1.19393 1.15047 0.78967 0.80532 0.73743 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.78 18.54 19.00 0.35 -14.42 15 2 C 0.27 8.57 14.02 88.33 1.24 9.81 15 3 C -0.11 -3.16 5.76 -21.09 -0.12 -3.28 15 4 C 0.20 5.06 7.24 22.68 0.16 5.23 15 5 F -0.11 -2.81 16.26 44.97 0.73 -2.08 15 6 C -0.16 -3.51 6.22 22.33 0.14 -3.37 15 7 Br 0.00 -0.07 33.26 -20.37 -0.68 -0.74 15 8 C 0.03 0.53 9.76 22.30 0.22 0.74 15 9 C -0.19 -5.26 8.89 22.37 0.20 -5.06 15 10 C 0.27 8.62 6.20 38.66 0.24 8.86 15 11 N -1.06 -38.46 5.50 -50.87 -0.28 -38.74 15 12 S 2.69 129.72 4.62 -56.49 -0.26 129.45 15 13 O -1.01 -53.83 17.41 -128.00 -2.23 -56.06 15 14 O -1.03 -57.34 18.02 -128.00 -2.31 -59.64 15 15 C -1.02 -46.94 7.56 67.74 0.51 -46.42 15 16 H 0.15 5.51 6.91 -2.91 -0.02 5.49 15 17 C 0.08 3.72 5.46 84.66 0.46 4.18 15 18 N -0.89 -47.57 13.19 21.45 0.28 -47.29 15 19 Si 0.99 34.83 29.54 68.60 2.03 36.85 15 20 H -0.26 -9.13 7.11 99.48 0.71 -8.43 15 21 H -0.27 -9.21 7.11 99.48 0.71 -8.50 15 22 H -0.23 -6.89 7.11 99.48 0.71 -6.18 15 23 H 0.19 2.57 8.06 -2.91 -0.02 2.55 15 24 H 0.18 5.42 4.47 -2.91 -0.01 5.40 15 25 H 0.43 13.94 8.24 -96.75 -0.80 13.14 15 26 H 0.30 14.53 8.31 -92.71 -0.77 13.76 15 Total: -1.00 -65.95 284.76 1.19 -64.76 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.50 Total: 17.23 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 3.05 Total: -29.32 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: 0.36 Total: -100.45 kcal Atomic # 8 Polarization: -111.17 SS G_CDS: -4.54 Total: -115.70 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.73 Total: -2.08 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 2.03 Total: 36.85 kcal Atomic # 16 Polarization: 129.72 SS G_CDS: -0.26 Total: 129.45 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -0.68 Total: -0.74 kcal Total: -65.95 1.19 -64.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982109.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.751 kcal (2) G-P(sol) polarization free energy of solvation -65.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds