Wall clock time and date at job start Wed Apr 1 2020 05:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00150 * 2 1 4 4 H 1.48502 * 109.47432 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47458 * 300.00470 * 3 2 1 6 6 H 1.48507 * 109.47079 * 60.00309 * 3 2 1 7 7 C 1.37878 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99958 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00013 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.40496 * 293.53880 * 9 7 2 11 11 O 1.42099 * 106.40200 * 66.45964 * 9 7 2 12 12 N 1.65605 * 107.22024 * 179.97438 * 9 7 2 13 13 C 1.38872 * 119.99829 * 68.08465 * 12 9 7 14 14 C 1.38911 * 120.16922 * 324.41169 * 13 12 9 15 15 C 1.38079 * 120.05250 * 179.76833 * 14 13 12 16 16 Br 1.89098 * 119.80051 * 180.25452 * 15 14 13 17 17 C 1.38728 * 120.39814 * 0.51432 * 15 14 13 18 18 C 1.37702 * 120.34585 * 359.74222 * 17 15 14 19 19 C 1.39760 * 119.93325 * 359.97438 * 18 17 15 20 20 C 1.47396 * 120.19638 * 179.97438 * 19 18 17 21 21 N 1.34781 * 119.99884 * 0.02562 * 20 19 18 22 22 O 1.21606 * 119.99735 * 180.02562 * 20 19 18 23 23 H 0.97002 * 119.99920 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00033 * 248.08734 * 12 9 7 25 25 H 1.07999 * 119.97215 * 0.02562 * 14 13 12 26 26 H 1.08006 * 119.82542 * 179.71894 * 17 15 14 27 27 H 1.07994 * 120.03523 * 179.97438 * 18 17 15 28 28 H 0.96994 * 119.99513 * 359.97438 * 21 20 19 29 29 H 0.96992 * 119.99848 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0019 10 8 0.4509 -2.7961 1.2475 11 8 0.4519 -2.7944 -1.2519 12 7 2.2482 -3.9355 -0.0030 13 6 3.0493 -4.1412 1.1126 14 6 3.4872 -3.0599 1.8666 15 6 4.2796 -3.2675 2.9782 16 35 4.8658 -1.7908 4.0036 17 6 4.6528 -4.5526 3.3440 18 6 4.2324 -5.6360 2.6054 19 6 3.4250 -5.4426 1.4811 20 6 2.9722 -6.5981 0.6859 21 7 3.3362 -7.8458 1.0426 22 8 2.2702 -6.4255 -0.2920 23 1 -0.4850 0.8401 0.0004 24 1 2.3475 -4.5037 -0.7828 25 1 3.2042 -2.0562 1.5856 26 1 5.2766 -4.7041 4.2126 27 1 4.5262 -6.6342 2.8945 28 1 3.8964 -7.9832 1.8223 29 1 3.0378 -8.6062 0.5195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192982255.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:41 Heat of formation + Delta-G solvation = -95.418691 kcal Electronic energy + Delta-G solvation = -20642.903553 eV Core-core repulsion = 17124.760404 eV Total energy + Delta-G solvation = -3518.143150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.28993 -38.21166 -35.42550 -34.95402 -34.10861 -33.71409 -33.20715 -31.91288 -29.57174 -28.81993 -26.35309 -23.68886 -22.55222 -20.77265 -19.00465 -18.42570 -17.61059 -16.94985 -16.71046 -16.36043 -15.22323 -15.13372 -14.82790 -14.43798 -14.39774 -14.04470 -13.52846 -13.36559 -13.04516 -12.21303 -12.14593 -11.85260 -11.31303 -11.27727 -10.98453 -10.66108 -10.60322 -10.44296 -10.34789 -10.30645 -10.16346 -9.78648 -9.77957 -9.33166 -8.92377 -8.73353 -7.99247 -6.80397 -5.46113 0.71337 1.40235 1.67044 2.07871 2.82913 3.02663 3.11396 3.18453 3.45363 3.79960 3.98418 4.41051 4.54207 4.69176 4.80224 5.12745 5.33159 5.39292 5.61278 5.72265 6.01366 6.09297 6.22841 6.34782 6.64767 6.70291 6.83325 7.20768 7.26665 7.73718 7.80959 8.25274 8.76365 10.13900 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.007449 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.403808 B = 3757.753203 C = 6425.515845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.137 3.863 3 Si 0.919 3.081 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.268 1.268 7 C -1.025 5.025 8 H 0.111 0.889 9 S 2.694 3.306 10 O -0.988 6.988 11 O -0.990 6.990 12 N -1.052 6.052 13 C 0.273 3.727 14 C -0.156 4.156 15 C -0.026 4.026 16 Br -0.044 7.044 17 C -0.139 4.139 18 C -0.055 4.055 19 C -0.184 4.184 20 C 0.570 3.430 21 N -0.853 5.853 22 O -0.534 6.534 23 H 0.293 0.707 24 H 0.428 0.572 25 H 0.179 0.821 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.399 0.601 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.607 -9.376 8.841 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.083 4.083 3 Si 0.742 3.258 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.193 1.193 7 C -1.158 5.158 8 H 0.129 0.871 9 S 2.795 3.205 10 O -0.978 6.978 11 O -0.980 6.980 12 N -0.795 5.795 13 C 0.168 3.832 14 C -0.178 4.178 15 C -0.107 4.107 16 Br 0.042 6.958 17 C -0.161 4.161 18 C -0.075 4.075 19 C -0.192 4.192 20 C 0.357 3.643 21 N -0.417 5.417 22 O -0.411 6.411 23 H 0.104 0.896 24 H 0.269 0.731 25 H 0.196 0.804 26 H 0.154 0.846 27 H 0.151 0.849 28 H 0.229 0.771 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 12.141 -8.487 8.643 17.150 hybrid contribution 0.971 0.157 -0.358 1.046 sum 13.112 -8.330 8.285 17.605 Atomic orbital electron populations 1.69895 1.06860 1.31002 1.38871 1.24733 0.94480 1.00828 0.88243 0.86129 0.80699 0.80146 0.78786 1.18135 1.19465 1.19314 1.30576 1.06133 1.11280 1.67794 0.87095 1.01339 0.72395 0.73401 0.73373 1.93412 1.71962 1.87096 1.45326 1.93402 1.72216 1.87149 1.45234 1.54473 1.51878 1.52132 1.21066 1.17228 0.87955 0.91287 0.86731 1.22040 0.98343 1.01755 0.95710 1.21685 1.00208 0.92708 0.96118 1.96713 1.88273 1.41209 1.69622 1.20826 1.03282 0.90340 1.01618 1.20964 0.95095 0.98701 0.92779 1.19758 1.07303 0.92375 0.99772 1.18045 0.79154 0.83228 0.83852 1.43677 1.56202 1.07947 1.33888 1.90729 1.37447 1.85171 1.27770 0.89624 0.73107 0.80385 0.84554 0.84869 0.77112 0.76525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.10 13.19 55.43 0.73 -23.36 15 2 C 0.14 3.70 5.46 -17.82 -0.10 3.60 15 3 Si 0.92 19.97 29.54 -169.99 -5.02 14.94 15 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 6 H -0.27 -5.62 7.11 56.52 0.40 -5.21 15 7 C -1.02 -27.32 7.65 30.60 0.23 -27.08 15 8 H 0.11 2.66 6.76 -52.49 -0.36 2.30 15 9 S 2.69 73.38 4.65 -107.50 -0.50 72.88 15 10 O -0.99 -29.19 17.49 -57.17 -1.00 -30.19 15 11 O -0.99 -29.86 18.02 -57.17 -1.03 -30.89 15 12 N -1.05 -23.27 5.06 32.54 0.16 -23.10 15 13 C 0.27 5.32 6.15 -83.62 -0.51 4.81 15 14 C -0.16 -2.98 8.76 -39.39 -0.34 -3.32 15 15 C -0.03 -0.41 6.22 -39.46 -0.25 -0.66 15 16 Br -0.04 -0.63 33.68 -68.01 -2.29 -2.92 15 17 C -0.14 -1.69 9.76 -39.60 -0.39 -2.08 15 18 C -0.06 -0.63 9.53 -39.21 -0.37 -1.00 15 19 C -0.18 -2.85 5.89 -104.80 -0.62 -3.47 15 20 C 0.57 8.53 8.03 -12.53 -0.10 8.43 15 21 N -0.85 -7.72 8.82 30.43 0.27 -7.45 15 22 O -0.53 -10.18 14.75 5.27 0.08 -10.10 15 23 H 0.29 7.53 8.31 -40.82 -0.34 7.20 15 24 H 0.43 8.99 6.56 -34.47 -0.23 8.77 15 25 H 0.18 3.78 4.42 -52.49 -0.23 3.55 15 26 H 0.14 1.22 8.06 -52.48 -0.42 0.80 15 27 H 0.13 0.86 6.40 -52.49 -0.34 0.53 15 28 H 0.40 2.23 6.86 -40.82 -0.28 1.95 15 29 H 0.40 3.04 8.93 -40.82 -0.36 2.68 15 LS Contribution 290.28 15.07 4.37 4.37 Total: -1.00 -36.24 290.28 -8.02 -44.27 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -1.35 Total: 12.31 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -2.45 Total: -20.77 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 1.16 Total: -53.91 kcal Atomic # 8 Polarization: -69.23 SS G_CDS: -1.95 Total: -71.19 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 73.38 SS G_CDS: -0.50 Total: 72.88 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.24 -8.02 -44.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982255.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.152 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds