Wall clock time and date at job start Wed Apr 1 2020 05:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00150 * 2 1 4 4 H 1.48502 * 109.47432 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47458 * 300.00470 * 3 2 1 6 6 H 1.48507 * 109.47079 * 60.00309 * 3 2 1 7 7 C 1.37878 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99958 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00013 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.40496 * 293.53880 * 9 7 2 11 11 O 1.42099 * 106.40200 * 66.45964 * 9 7 2 12 12 N 1.65605 * 107.22024 * 179.97438 * 9 7 2 13 13 C 1.38872 * 119.99829 * 68.08465 * 12 9 7 14 14 C 1.38911 * 120.16922 * 324.41169 * 13 12 9 15 15 C 1.38079 * 120.05250 * 179.76833 * 14 13 12 16 16 Br 1.89098 * 119.80051 * 180.25452 * 15 14 13 17 17 C 1.38728 * 120.39814 * 0.51432 * 15 14 13 18 18 C 1.37702 * 120.34585 * 359.74222 * 17 15 14 19 19 C 1.39760 * 119.93325 * 359.97438 * 18 17 15 20 20 C 1.47396 * 120.19638 * 179.97438 * 19 18 17 21 21 N 1.34781 * 119.99884 * 0.02562 * 20 19 18 22 22 O 1.21606 * 119.99735 * 180.02562 * 20 19 18 23 23 H 0.97002 * 119.99920 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00033 * 248.08734 * 12 9 7 25 25 H 1.07999 * 119.97215 * 0.02562 * 14 13 12 26 26 H 1.08006 * 119.82542 * 179.71894 * 17 15 14 27 27 H 1.07994 * 120.03523 * 179.97438 * 18 17 15 28 28 H 0.96994 * 119.99513 * 359.97438 * 21 20 19 29 29 H 0.96992 * 119.99848 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0019 10 8 0.4509 -2.7961 1.2475 11 8 0.4519 -2.7944 -1.2519 12 7 2.2482 -3.9355 -0.0030 13 6 3.0493 -4.1412 1.1126 14 6 3.4872 -3.0599 1.8666 15 6 4.2796 -3.2675 2.9782 16 35 4.8658 -1.7908 4.0036 17 6 4.6528 -4.5526 3.3440 18 6 4.2324 -5.6360 2.6054 19 6 3.4250 -5.4426 1.4811 20 6 2.9722 -6.5981 0.6859 21 7 3.3362 -7.8458 1.0426 22 8 2.2702 -6.4255 -0.2920 23 1 -0.4850 0.8401 0.0004 24 1 2.3475 -4.5037 -0.7828 25 1 3.2042 -2.0562 1.5856 26 1 5.2766 -4.7041 4.2126 27 1 4.5262 -6.6342 2.8945 28 1 3.8964 -7.9832 1.8223 29 1 3.0378 -8.6062 0.5195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192982255.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:41 Heat of formation + Delta-G solvation = -127.602888 kcal Electronic energy + Delta-G solvation = -20644.299165 eV Core-core repulsion = 17124.760404 eV Total energy + Delta-G solvation = -3519.538761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49365 -39.41789 -37.59119 -36.41101 -36.31618 -35.28893 -34.82496 -33.02811 -30.83530 -30.06441 -28.42420 -24.85333 -23.85712 -21.99456 -20.91663 -19.92867 -19.08128 -18.40070 -18.24136 -17.86859 -17.07255 -16.32572 -16.21026 -15.97463 -15.84054 -15.71349 -15.21776 -14.59484 -14.33980 -14.06109 -13.64460 -13.22478 -13.07399 -12.92790 -12.79063 -12.67176 -12.59543 -12.29329 -12.12311 -11.57093 -11.30491 -11.29462 -11.13304 -10.90809 -10.74787 -9.92552 -9.36132 -8.82230 -7.58181 -0.48124 0.00719 0.28677 0.51420 1.32563 1.33729 1.52318 1.66821 2.16989 2.45767 2.52121 2.62273 2.68020 3.53366 3.66354 3.84489 3.94524 4.09314 4.14958 4.39462 4.48215 4.80876 4.97645 5.09372 5.20360 5.26099 5.57519 5.79339 5.82267 6.16877 6.40533 6.68562 7.28628 8.15290 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.007449 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.403808 B = 3757.753203 C = 6425.515845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.988 3.012 4 H -0.241 1.241 5 H -0.259 1.259 6 H -0.255 1.255 7 C -1.030 5.030 8 H 0.130 0.870 9 S 2.698 3.302 10 O -1.025 7.025 11 O -1.036 7.036 12 N -1.048 6.048 13 C 0.225 3.775 14 C -0.187 4.187 15 C -0.036 4.036 16 Br -0.035 7.035 17 C -0.118 4.118 18 C -0.030 4.030 19 C -0.184 4.184 20 C 0.563 3.437 21 N -0.818 5.818 22 O -0.586 6.586 23 H 0.302 0.698 24 H 0.429 0.571 25 H 0.149 0.851 26 H 0.182 0.818 27 H 0.197 0.803 28 H 0.421 0.579 29 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.884 -10.708 11.067 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.805 3.195 4 H -0.164 1.164 5 H -0.183 1.183 6 H -0.179 1.179 7 C -1.164 5.164 8 H 0.148 0.852 9 S 2.801 3.199 10 O -1.015 7.015 11 O -1.026 7.026 12 N -0.797 5.797 13 C 0.122 3.878 14 C -0.210 4.210 15 C -0.117 4.117 16 Br 0.051 6.949 17 C -0.139 4.139 18 C -0.049 4.049 19 C -0.193 4.193 20 C 0.350 3.650 21 N -0.383 5.383 22 O -0.467 6.467 23 H 0.112 0.888 24 H 0.271 0.729 25 H 0.166 0.834 26 H 0.200 0.800 27 H 0.214 0.786 28 H 0.254 0.746 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 15.450 -9.897 10.922 21.353 hybrid contribution 0.079 0.382 -0.911 0.991 sum 15.529 -9.515 10.011 20.782 Atomic orbital electron populations 1.69991 1.08883 1.32629 1.40397 1.26009 0.95340 1.05188 0.87211 0.85128 0.79900 0.74826 0.79629 1.16363 1.18302 1.17889 1.30776 1.07067 1.11070 1.67488 0.85207 1.00802 0.72883 0.74284 0.71937 1.93339 1.73860 1.87926 1.46394 1.93325 1.74409 1.88126 1.46759 1.53700 1.52243 1.51101 1.22648 1.17598 0.89836 0.93456 0.86886 1.21827 1.00825 1.00434 0.97957 1.21942 0.99727 0.94734 0.95297 1.96712 1.87839 1.41566 1.68772 1.21422 1.01717 0.88639 1.02078 1.21631 0.91962 1.01467 0.89889 1.20035 1.07350 0.90941 1.00934 1.18144 0.78906 0.84689 0.83281 1.43369 1.54719 1.06161 1.34061 1.90712 1.39960 1.85986 1.30030 0.88772 0.72913 0.83408 0.80027 0.78645 0.74554 0.75159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.17 13.19 21.45 0.28 -52.88 15 2 C 0.08 4.25 5.46 84.66 0.46 4.71 15 3 Si 0.99 40.91 29.54 68.60 2.03 42.94 15 4 H -0.24 -9.21 7.11 99.48 0.71 -8.50 15 5 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 6 H -0.25 -9.92 7.11 99.48 0.71 -9.21 15 7 C -1.03 -57.07 7.65 67.73 0.52 -56.55 15 8 H 0.13 6.44 6.76 -2.91 -0.02 6.42 15 9 S 2.70 155.88 4.65 -56.49 -0.26 155.62 15 10 O -1.03 -64.32 17.49 -128.00 -2.24 -66.56 15 11 O -1.04 -66.71 18.02 -128.00 -2.31 -69.02 15 12 N -1.05 -48.94 5.06 -50.95 -0.26 -49.19 15 13 C 0.22 8.88 6.15 38.71 0.24 9.12 15 14 C -0.19 -7.24 8.76 22.39 0.20 -7.04 15 15 C -0.04 -1.06 6.22 22.35 0.14 -0.92 15 16 Br -0.03 -0.93 33.68 -20.37 -0.69 -1.61 15 17 C -0.12 -2.30 9.76 22.26 0.22 -2.08 15 18 C -0.03 -0.53 9.53 22.51 0.21 -0.31 15 19 C -0.18 -5.36 5.89 -19.98 -0.12 -5.48 15 20 C 0.56 15.91 8.03 86.65 0.70 16.61 15 21 N -0.82 -11.65 8.82 -175.90 -1.55 -13.20 15 22 O -0.59 -22.70 14.75 -4.05 -0.06 -22.76 15 23 H 0.30 16.10 8.31 -92.71 -0.77 15.33 15 24 H 0.43 19.29 6.56 -96.74 -0.63 18.66 15 25 H 0.15 6.55 4.42 -2.91 -0.01 6.53 15 26 H 0.18 1.98 8.06 -2.91 -0.02 1.96 15 27 H 0.20 0.95 6.40 -2.91 -0.02 0.93 15 28 H 0.42 2.22 6.86 -92.71 -0.64 1.59 15 29 H 0.42 4.84 8.93 -92.71 -0.83 4.01 15 Total: -1.00 -87.05 290.28 -3.31 -90.37 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.82 Total: 28.24 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 2.56 Total: -41.94 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -1.53 Total: -115.28 kcal Atomic # 8 Polarization: -153.72 SS G_CDS: -4.60 Total: -158.33 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 155.88 SS G_CDS: -0.26 Total: 155.62 kcal Atomic # 35 Polarization: -0.93 SS G_CDS: -0.69 Total: -1.61 kcal Total: -87.05 -3.31 -90.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982255.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.236 kcal (2) G-P(sol) polarization free energy of solvation -87.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds