Wall clock time and date at job start Wed Apr 1 2020 05:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33391 * 125.20008 * 2 1 4 4 C 1.38423 * 114.91639 * 180.17504 * 3 2 1 5 5 S 1.76204 * 122.53511 * 179.80626 * 4 3 2 6 6 O 1.42100 * 106.40543 * 1.16817 * 5 4 3 7 7 O 1.42101 * 106.40118 * 228.24677 * 5 4 3 8 8 N 1.65608 * 107.21795 * 114.70784 * 5 4 3 9 9 C 1.47585 * 134.48972 * 89.99922 * 8 5 4 10 10 C 1.53946 * 86.11303 * 155.35854 * 9 8 5 11 11 O 1.42897 * 113.74194 * 269.15036 * 10 9 8 12 12 C 1.50705 * 113.74193 * 137.95267 * 10 9 8 13 13 H 1.08000 * 119.99753 * 17.18899 * 12 10 9 14 14 C 1.37873 * 119.99893 * 197.19270 * 12 10 9 15 15 N 1.31513 * 119.99896 * 194.35422 * 14 12 10 16 16 Si 1.86797 * 120.00211 * 14.35029 * 14 12 10 17 17 H 1.48498 * 109.46923 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47361 * 300.00177 * 16 14 12 19 19 H 1.48501 * 109.47273 * 60.00378 * 16 14 12 20 20 C 1.47807 * 134.45879 * 269.86725 * 8 5 4 21 21 C 1.33387 * 114.92409 * 359.53204 * 4 3 2 22 22 N 1.48037 * 125.20317 * 180.26722 * 21 4 3 23 23 O 1.21806 * 120.00233 * 0.02562 * 22 21 4 24 24 O 1.21801 * 119.99994 * 179.97438 * 22 21 4 25 25 S 1.75881 * 109.59398 * 0.25154 * 21 4 3 26 26 H 1.09002 * 109.46919 * 180.28043 * 1 2 3 27 27 H 1.08997 * 109.47441 * 300.27701 * 1 2 3 28 28 H 1.08997 * 109.47633 * 60.28297 * 1 2 3 29 29 H 1.07994 * 122.54400 * 359.97140 * 3 2 1 30 30 H 1.08992 * 113.77064 * 41.05655 * 9 8 5 31 31 H 1.09002 * 113.86851 * 269.67158 * 9 8 5 32 32 H 0.96694 * 114.00247 * 174.14979 * 11 10 9 33 33 H 0.97009 * 119.99986 * 354.85954 * 15 14 12 34 34 H 1.08994 * 113.77033 * 90.37447 * 20 8 5 35 35 H 1.09004 * 113.83092 * 318.91797 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6378 0.8429 -0.0038 5 16 4.8355 2.1354 -0.0096 6 8 4.1087 3.3561 0.0186 7 8 5.7709 1.8111 -1.0289 8 7 5.6581 2.0478 1.4251 9 6 6.8720 1.3423 1.8798 10 6 6.9874 2.4465 2.9463 11 8 7.7704 3.5675 2.5314 12 6 7.3713 1.9345 4.3107 13 1 7.8030 0.9502 4.4163 14 6 7.1713 2.7227 5.4241 15 7 7.7511 2.4114 6.5628 16 14 6.0770 4.2326 5.3153 17 1 6.0266 4.9038 6.6390 18 1 6.6279 5.1716 4.3054 19 1 4.7068 3.8232 4.9150 20 6 5.4721 2.6470 2.7633 21 6 3.9750 -0.4477 0.0029 22 7 5.3611 -0.9676 0.0064 23 8 6.3018 -0.1938 0.0034 24 8 5.5608 -2.1691 0.0131 25 16 2.5209 -1.4371 0.0076 26 1 -0.3633 -1.0277 0.0050 27 1 -0.3634 0.5181 0.8874 28 1 -0.3634 0.5094 -0.8925 29 1 1.8668 2.0895 -0.0005 30 1 7.6827 1.3487 1.1513 31 1 6.6784 0.3519 2.2919 32 1 7.7721 4.3009 3.1616 33 1 8.2584 1.5882 6.6397 34 1 4.8644 2.0412 3.4354 35 1 5.1671 3.6933 2.7389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211561786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:34 Heat of formation + Delta-G solvation = -28.508868 kcal Electronic energy + Delta-G solvation = -27552.344672 eV Core-core repulsion = 23389.407436 eV Total energy + Delta-G solvation = -4162.937235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.27753 -38.90526 -38.78715 -37.17041 -36.54619 -35.66733 -34.19949 -33.10908 -32.59790 -29.13357 -28.02838 -25.84091 -25.56205 -24.19935 -24.07291 -20.91257 -19.96815 -19.68069 -19.11095 -18.07306 -17.94398 -17.74713 -17.41192 -16.86042 -16.20093 -15.78575 -15.39300 -14.75071 -14.66375 -14.33105 -13.77845 -13.59689 -13.38537 -13.32025 -13.16717 -13.03039 -12.56517 -12.09771 -12.02165 -12.01137 -11.80835 -11.72924 -11.66066 -11.52042 -11.20909 -11.07354 -11.06532 -10.73372 -10.34001 -9.83253 -9.76549 -9.52286 -9.36406 -9.04047 -8.78211 -8.21956 -6.70855 -4.44169 -0.93273 0.03380 0.36470 0.84510 0.91406 1.31692 1.54678 3.03430 3.12166 3.20132 3.38154 3.71193 3.94260 4.18693 4.19654 4.50569 4.57703 4.87297 4.88973 4.97760 5.05822 5.20536 5.25705 5.43881 5.56822 5.75575 5.95676 6.01900 6.09955 6.35944 6.47545 6.64398 7.17587 7.38327 7.59557 8.10588 8.60029 8.78019 9.30236 10.64972 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.004576 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.203204 B = 6117.522560 C = 6378.317480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.151 4.151 3 C -0.086 4.086 4 C -0.599 4.599 5 S 2.695 3.305 6 O -0.949 6.949 7 O -0.924 6.924 8 N -1.008 6.008 9 C 0.164 3.836 10 C 0.206 3.794 11 O -0.562 6.562 12 C -0.613 4.613 13 H 0.072 0.928 14 C 0.036 3.964 15 N -0.887 5.887 16 Si 1.034 2.966 17 H -0.278 1.278 18 H -0.276 1.276 19 H -0.273 1.273 20 C 0.079 3.921 21 C -0.086 4.086 22 N 0.039 4.961 23 O -0.097 6.097 24 O -0.146 6.146 25 S 0.283 5.717 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.177 0.823 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.367 0.633 33 H 0.274 0.726 34 H 0.090 0.910 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.122 -5.565 -11.172 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.272 4.272 3 C -0.113 4.113 4 C -0.697 4.697 5 S 2.778 3.222 6 O -0.939 6.939 7 O -0.914 6.914 8 N -0.850 5.850 9 C 0.040 3.960 10 C 0.162 3.838 11 O -0.370 6.370 12 C -0.652 4.652 13 H 0.090 0.910 14 C -0.172 4.172 15 N -0.519 5.519 16 Si 0.862 3.138 17 H -0.203 1.203 18 H -0.202 1.202 19 H -0.199 1.199 20 C -0.047 4.047 21 C -0.288 4.288 22 N 0.561 4.439 23 O -0.319 6.319 24 O -0.359 6.359 25 S 0.551 5.449 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.194 0.806 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.216 0.784 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.639 -5.543 -11.734 21.899 hybrid contribution 0.452 -0.406 -0.172 0.632 sum -17.186 -5.950 -11.906 21.738 Atomic orbital electron populations 1.20549 0.85426 1.04101 1.04696 1.25379 1.01604 0.95732 1.04463 1.19668 0.88455 1.01709 1.01495 1.31022 1.15497 1.13884 1.09312 1.02588 0.72507 0.73282 0.73799 1.93551 1.73740 1.39956 1.86660 1.93632 1.58839 1.84279 1.54696 1.60333 1.38269 1.61062 1.25374 1.22824 0.83339 0.95260 0.94563 1.20457 0.84786 0.85090 0.93467 1.86375 1.72259 1.28336 1.50063 1.22250 1.47186 1.05654 0.90079 0.91036 1.25805 0.96249 1.02404 0.92717 1.70808 1.28916 1.24394 1.27823 0.84231 0.76917 0.75867 0.76797 1.20329 1.20235 1.19916 1.24408 1.03337 0.97728 0.79225 1.25743 0.88719 0.97712 1.16647 1.42730 1.00720 1.01285 0.99131 1.94764 1.32139 1.54224 1.50790 1.94563 1.90271 0.97367 1.53730 1.84431 0.89826 1.05255 1.65417 0.90427 0.88788 0.88924 0.80618 0.89126 0.90032 0.78355 0.91530 0.89184 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.38 36.00 0.37 -0.06 16 2 C -0.15 -1.37 6.51 -36.00 -0.23 -1.60 16 3 C -0.09 -1.00 9.57 -41.21 -0.39 -1.40 16 4 C -0.60 -9.06 5.83 -41.21 -0.24 -9.30 16 5 S 2.69 49.61 5.49 -107.50 -0.59 49.02 16 6 O -0.95 -18.18 17.32 -57.17 -0.99 -19.17 16 7 O -0.92 -18.97 15.37 -66.94 -1.03 -19.99 16 8 N -1.01 -19.94 3.98 -118.53 -0.47 -20.41 16 9 C 0.16 3.43 5.63 -2.96 -0.02 3.41 16 10 C 0.21 4.71 1.07 -90.85 -0.10 4.61 16 11 O -0.56 -13.03 13.47 -35.23 -0.47 -13.50 16 12 C -0.61 -15.73 9.04 -34.44 -0.31 -16.04 16 13 H 0.07 1.97 8.06 -52.49 -0.42 1.55 16 14 C 0.04 0.95 5.44 -17.82 -0.10 0.85 16 15 N -0.89 -24.94 13.70 55.43 0.76 -24.18 16 16 Si 1.03 22.22 24.55 -169.99 -4.17 18.04 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -5.38 5.81 56.52 0.33 -5.05 16 19 H -0.27 -5.36 6.48 56.52 0.37 -4.99 16 20 C 0.08 1.61 5.75 -2.84 -0.02 1.59 16 21 C -0.09 -1.29 7.48 -11.32 -0.08 -1.37 16 22 N 0.04 0.67 4.46 33.44 0.15 0.82 16 23 O -0.10 -1.85 11.07 -37.04 -0.41 -2.26 16 24 O -0.15 -2.42 19.08 -29.46 -0.56 -2.99 16 25 S 0.28 2.91 23.12 -107.50 -2.49 0.42 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.18 1.76 7.74 -52.49 -0.41 1.36 16 30 H 0.09 1.88 7.73 -51.93 -0.40 1.48 16 31 H 0.08 1.62 7.72 -51.93 -0.40 1.22 16 32 H 0.37 7.84 6.07 45.56 0.28 8.12 16 33 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16 34 H 0.09 1.74 7.97 -51.93 -0.41 1.32 16 35 H 0.07 1.43 6.87 -51.93 -0.36 1.07 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -32.04 322.99 -9.18 -41.22 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -2.65 Total: 7.43 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -1.12 Total: -19.31 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.44 Total: -43.77 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -3.47 Total: -57.92 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.17 Total: 18.04 kcal Atomic # 16 Polarization: 52.51 SS G_CDS: -3.08 Total: 49.44 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.04 -9.18 -41.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211561786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.713 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds