Wall clock time and date at job start Wed Apr 1 2020 05:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33391 * 125.20008 * 2 1 4 4 C 1.38423 * 114.91639 * 180.17504 * 3 2 1 5 5 S 1.76204 * 122.53511 * 179.80626 * 4 3 2 6 6 O 1.42100 * 106.40543 * 1.16817 * 5 4 3 7 7 O 1.42101 * 106.40118 * 228.24677 * 5 4 3 8 8 N 1.65608 * 107.21795 * 114.70784 * 5 4 3 9 9 C 1.47585 * 134.48972 * 89.99922 * 8 5 4 10 10 C 1.53946 * 86.11303 * 155.35854 * 9 8 5 11 11 O 1.42897 * 113.74194 * 269.15036 * 10 9 8 12 12 C 1.50705 * 113.74193 * 137.95267 * 10 9 8 13 13 H 1.08000 * 119.99753 * 17.18899 * 12 10 9 14 14 C 1.37873 * 119.99893 * 197.19270 * 12 10 9 15 15 N 1.31513 * 119.99896 * 194.35422 * 14 12 10 16 16 Si 1.86797 * 120.00211 * 14.35029 * 14 12 10 17 17 H 1.48498 * 109.46923 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47361 * 300.00177 * 16 14 12 19 19 H 1.48501 * 109.47273 * 60.00378 * 16 14 12 20 20 C 1.47807 * 134.45879 * 269.86725 * 8 5 4 21 21 C 1.33387 * 114.92409 * 359.53204 * 4 3 2 22 22 N 1.48037 * 125.20317 * 180.26722 * 21 4 3 23 23 O 1.21806 * 120.00233 * 0.02562 * 22 21 4 24 24 O 1.21801 * 119.99994 * 179.97438 * 22 21 4 25 25 S 1.75881 * 109.59398 * 0.25154 * 21 4 3 26 26 H 1.09002 * 109.46919 * 180.28043 * 1 2 3 27 27 H 1.08997 * 109.47441 * 300.27701 * 1 2 3 28 28 H 1.08997 * 109.47633 * 60.28297 * 1 2 3 29 29 H 1.07994 * 122.54400 * 359.97140 * 3 2 1 30 30 H 1.08992 * 113.77064 * 41.05655 * 9 8 5 31 31 H 1.09002 * 113.86851 * 269.67158 * 9 8 5 32 32 H 0.96694 * 114.00247 * 174.14979 * 11 10 9 33 33 H 0.97009 * 119.99986 * 354.85954 * 15 14 12 34 34 H 1.08994 * 113.77033 * 90.37447 * 20 8 5 35 35 H 1.09004 * 113.83092 * 318.91797 * 20 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6378 0.8429 -0.0038 5 16 4.8355 2.1354 -0.0096 6 8 4.1087 3.3561 0.0186 7 8 5.7709 1.8111 -1.0289 8 7 5.6581 2.0478 1.4251 9 6 6.8720 1.3423 1.8798 10 6 6.9874 2.4465 2.9463 11 8 7.7704 3.5675 2.5314 12 6 7.3713 1.9345 4.3107 13 1 7.8030 0.9502 4.4163 14 6 7.1713 2.7227 5.4241 15 7 7.7511 2.4114 6.5628 16 14 6.0770 4.2326 5.3153 17 1 6.0266 4.9038 6.6390 18 1 6.6279 5.1716 4.3054 19 1 4.7068 3.8232 4.9150 20 6 5.4721 2.6470 2.7633 21 6 3.9750 -0.4477 0.0029 22 7 5.3611 -0.9676 0.0064 23 8 6.3018 -0.1938 0.0034 24 8 5.5608 -2.1691 0.0131 25 16 2.5209 -1.4371 0.0076 26 1 -0.3633 -1.0277 0.0050 27 1 -0.3634 0.5181 0.8874 28 1 -0.3634 0.5094 -0.8925 29 1 1.8668 2.0895 -0.0005 30 1 7.6827 1.3487 1.1513 31 1 6.6784 0.3519 2.2919 32 1 7.7721 4.3009 3.1616 33 1 8.2584 1.5882 6.6397 34 1 4.8644 2.0412 3.4354 35 1 5.1671 3.6933 2.7389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211561786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:33 Heat of formation + Delta-G solvation = -54.775828 kcal Electronic energy + Delta-G solvation = -27553.483692 eV Core-core repulsion = 23389.407436 eV Total energy + Delta-G solvation = -4164.076256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.49893 -40.59345 -39.74077 -38.60604 -37.84982 -37.16578 -35.98601 -34.61871 -33.88855 -30.05374 -29.79541 -27.44912 -26.56594 -25.97063 -25.17025 -21.98079 -21.50768 -20.99740 -20.41664 -19.91901 -19.35465 -19.06147 -18.63841 -18.11753 -17.48028 -17.30358 -16.97762 -16.16765 -15.59454 -15.48019 -15.29530 -15.16059 -14.93109 -14.36676 -14.16895 -13.90993 -13.80185 -13.73122 -13.45830 -13.43936 -13.38533 -13.00315 -12.93252 -12.74654 -12.56993 -12.46584 -12.39961 -12.25122 -12.01988 -11.66954 -11.15922 -10.89685 -10.61896 -10.47863 -10.40078 -10.02357 -8.79879 -6.55469 -2.05477 -1.11608 -0.80275 -0.29311 -0.02232 0.30304 0.57166 1.43948 1.49289 1.57820 1.72422 2.37692 2.42464 2.81212 2.93778 3.23336 3.35528 3.37738 3.82057 3.98488 4.06803 4.11223 4.39428 4.49073 4.50163 4.64046 4.65614 4.71805 4.82580 4.85209 4.95508 5.07942 5.50284 5.69034 5.94424 6.07504 6.44495 7.01351 7.28984 8.54682 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.004576 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.203204 B = 6117.522560 C = 6378.317480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.117 4.117 3 C -0.106 4.106 4 C -0.604 4.604 5 S 2.712 3.288 6 O -0.959 6.959 7 O -0.955 6.955 8 N -1.015 6.015 9 C 0.172 3.828 10 C 0.191 3.809 11 O -0.571 6.571 12 C -0.617 4.617 13 H 0.034 0.966 14 C -0.005 4.005 15 N -0.920 5.920 16 Si 1.061 2.939 17 H -0.285 1.285 18 H -0.245 1.245 19 H -0.237 1.237 20 C 0.084 3.916 21 C -0.134 4.134 22 N 0.040 4.960 23 O -0.162 6.162 24 O -0.133 6.133 25 S 0.358 5.642 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.194 0.806 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.373 0.627 33 H 0.258 0.742 34 H 0.102 0.898 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.898 -5.548 -12.392 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.238 4.238 3 C -0.132 4.132 4 C -0.709 4.709 5 S 2.800 3.200 6 O -0.950 6.950 7 O -0.945 6.945 8 N -0.856 5.856 9 C 0.047 3.953 10 C 0.148 3.852 11 O -0.380 6.380 12 C -0.656 4.656 13 H 0.052 0.948 14 C -0.206 4.206 15 N -0.554 5.554 16 Si 0.880 3.120 17 H -0.211 1.211 18 H -0.170 1.170 19 H -0.161 1.161 20 C -0.041 4.041 21 C -0.337 4.337 22 N 0.557 4.443 23 O -0.370 6.370 24 O -0.353 6.353 25 S 0.627 5.373 26 H 0.118 0.882 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.211 0.789 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.224 0.776 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.292 -5.419 -12.962 26.350 hybrid contribution 1.684 -0.680 0.108 1.820 sum -20.607 -6.099 -12.855 25.042 Atomic orbital electron populations 1.20914 0.81690 1.06241 1.06524 1.26078 1.03621 0.94383 0.99737 1.19903 0.87000 1.03539 1.02748 1.30482 1.16112 1.12642 1.11674 1.01530 0.72442 0.73397 0.72588 1.93532 1.73720 1.41197 1.86511 1.93598 1.60648 1.84893 1.55371 1.60101 1.38747 1.61293 1.25454 1.22598 0.84019 0.94870 0.93799 1.20510 0.86706 0.85661 0.92361 1.86361 1.72825 1.28582 1.50212 1.22322 1.46774 1.04237 0.92241 0.94754 1.27201 0.96419 1.05121 0.91835 1.70949 1.30851 1.24331 1.29294 0.83985 0.77278 0.73249 0.77463 1.21074 1.17020 1.16105 1.24243 1.00996 0.99001 0.79889 1.25961 0.88302 0.99174 1.20281 1.43014 1.01834 1.01095 0.98361 1.94771 1.33769 1.54259 1.54153 1.94504 1.90926 0.97646 1.52245 1.84260 0.86573 1.04356 1.62158 0.88213 0.86888 0.86652 0.78925 0.90109 0.89971 0.77627 0.93265 0.88023 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.30 10.38 71.23 0.74 0.44 16 2 C -0.12 -1.52 6.51 24.59 0.16 -1.36 16 3 C -0.11 -2.09 9.57 21.22 0.20 -1.89 16 4 C -0.60 -17.23 5.83 21.22 0.12 -17.11 16 5 S 2.71 98.90 5.49 -56.49 -0.31 98.59 16 6 O -0.96 -35.39 17.32 -128.00 -2.22 -37.60 16 7 O -0.95 -40.23 15.37 -118.66 -1.82 -42.05 16 8 N -1.02 -40.16 3.98 -532.76 -2.12 -42.29 16 9 C 0.17 7.46 5.63 86.49 0.49 7.95 16 10 C 0.19 8.85 1.07 -10.88 -0.01 8.84 16 11 O -0.57 -26.57 13.47 -148.98 -2.01 -28.58 16 12 C -0.62 -32.85 9.04 25.60 0.23 -32.62 16 13 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 14 C 0.00 -0.24 5.44 84.65 0.46 0.22 16 15 N -0.92 -53.62 13.70 21.45 0.29 -53.32 16 16 Si 1.06 43.32 24.55 68.60 1.68 45.00 16 17 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.25 -8.78 5.81 99.48 0.58 -8.20 16 19 H -0.24 -8.32 6.48 99.48 0.64 -7.67 16 20 C 0.08 3.33 5.75 86.44 0.50 3.83 16 21 C -0.13 -3.83 7.48 80.82 0.60 -3.23 16 22 N 0.04 1.41 4.46 -48.13 -0.21 1.19 16 23 O -0.16 -6.48 11.07 26.13 0.29 -6.19 16 24 O -0.13 -4.40 19.08 18.88 0.36 -4.04 16 25 S 0.36 5.95 23.12 -56.49 -1.31 4.64 16 26 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.19 3.08 7.74 -2.91 -0.02 3.06 16 30 H 0.08 3.59 7.73 -2.39 -0.02 3.57 16 31 H 0.08 3.48 7.72 -2.39 -0.02 3.46 16 32 H 0.37 15.71 6.07 -74.06 -0.45 15.26 16 33 H 0.26 15.36 8.73 -92.70 -0.81 14.55 16 34 H 0.10 3.75 7.97 -2.39 -0.02 3.73 16 35 H 0.09 3.24 6.87 -2.38 -0.02 3.23 16 Total: -1.00 -74.38 322.99 -3.38 -77.76 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.49 Total: 21.81 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 3.49 Total: -34.92 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -2.04 Total: -94.42 kcal Atomic # 8 Polarization: -113.07 SS G_CDS: -5.40 Total: -118.46 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.68 Total: 45.00 kcal Atomic # 16 Polarization: 104.85 SS G_CDS: -1.62 Total: 103.23 kcal Total: -74.38 -3.38 -77.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211561786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.987 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds