Wall clock time and date at job start Wed Apr 1 2020 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47576 * 2 1 4 4 C 1.34224 * 117.00432 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99712 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00140 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.47263 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.46531 * 55.00273 * 7 6 4 9 9 C 1.50697 * 109.47303 * 174.99836 * 7 6 4 10 10 H 1.07991 * 120.00449 * 239.72787 * 9 7 6 11 11 C 1.37885 * 119.99686 * 60.00618 * 9 7 6 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 7 14 14 H 1.48490 * 109.47339 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 120.00108 * 13 11 9 16 16 H 1.48504 * 109.46636 * 239.99667 * 13 11 9 17 17 O 1.42895 * 109.47285 * 295.00481 * 7 6 4 18 18 C 1.35615 * 117.00013 * 149.99512 * 17 7 6 19 19 N 1.30459 * 126.36138 * 359.69243 * 18 17 7 20 20 O 1.21293 * 110.15885 * 179.80206 * 19 18 17 21 21 C 1.33654 * 109.93651 * 0.46371 * 20 19 18 22 22 C 1.50699 * 126.48116 * 179.71256 * 21 20 19 23 23 Br 1.96600 * 109.47311 * 269.99821 * 22 21 20 24 24 N 1.31070 * 107.03392 * 359.71024 * 21 20 19 25 25 H 1.09002 * 109.47247 * 300.00130 * 1 2 3 26 26 H 1.08999 * 109.47392 * 59.99493 * 1 2 3 27 27 H 1.09000 * 109.47331 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47247 * 239.99870 * 2 1 3 29 29 H 1.09001 * 109.47238 * 119.99983 * 2 1 3 30 30 H 1.09008 * 109.47030 * 60.00487 * 6 4 3 31 31 H 1.08997 * 109.47713 * 300.00103 * 6 4 3 32 32 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 33 33 H 1.09006 * 109.47410 * 30.00135 * 22 21 20 34 34 H 1.09002 * 109.46927 * 149.99869 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8572 0.0014 8 1 5.7814 2.2489 -0.8397 9 6 6.0246 4.2442 -0.1230 10 1 6.6637 4.4907 -0.9579 11 6 5.7402 5.1970 0.8323 12 7 4.9619 4.8968 1.8491 13 14 6.4602 6.9141 0.6822 14 1 7.2965 6.9949 -0.5422 15 1 5.3592 7.9068 0.5966 16 1 7.2978 7.2054 1.8734 17 8 5.8936 2.2645 1.2232 18 6 7.0500 1.5575 1.1793 19 7 7.7960 1.3595 0.1276 20 8 8.7634 0.6893 0.4214 21 6 8.7241 0.3774 1.7204 22 6 9.7355 -0.4464 2.4751 23 35 9.2201 -2.3423 2.4051 24 7 7.6395 0.9234 2.2138 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5845 3.4700 0.8896 31 1 3.5853 3.4690 -0.8904 32 1 4.7615 5.5672 2.5209 33 1 10.7185 -0.3200 2.0212 34 1 9.7699 -0.1173 3.5137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223177177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:20 Heat of formation + Delta-G solvation = -46.992547 kcal Electronic energy + Delta-G solvation = -22898.180646 eV Core-core repulsion = 19075.217635 eV Total energy + Delta-G solvation = -3822.963011 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 348.020 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.78244 -39.85329 -37.80798 -35.99607 -35.01032 -33.57212 -32.61505 -31.62000 -30.54767 -30.19032 -27.29323 -26.38051 -23.57520 -23.22123 -22.45581 -21.15177 -19.83389 -17.99721 -17.63547 -17.21271 -16.56722 -16.19340 -15.68987 -15.41525 -14.98351 -14.72166 -13.97102 -13.85598 -13.70221 -13.30100 -13.18734 -12.70500 -12.52329 -12.26211 -11.84783 -11.69958 -11.49030 -11.29856 -11.12305 -10.91591 -10.82448 -10.46690 -10.40346 -10.18342 -10.16862 -10.08259 -9.80676 -9.54783 -9.48288 -8.86246 -8.20854 -6.35054 -4.55345 0.93590 2.08923 2.95316 3.07520 3.10727 3.21838 3.24548 3.25661 3.27828 3.43138 4.17640 4.48234 4.83411 4.93830 5.07631 5.11070 5.13548 5.30880 5.35860 5.45639 5.86441 5.88916 5.98525 6.06317 6.22224 6.38341 6.49616 6.69994 6.93640 7.18216 7.58196 7.77250 8.25724 8.45200 8.63927 8.98151 9.22665 10.67013 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.008779 B = 0.004273 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.674527 B = 6551.127381 C = 9286.873409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.456 3.544 5 O -0.515 6.515 6 C -0.101 4.101 7 C 0.228 3.772 8 H 0.043 0.957 9 C -0.554 4.554 10 H 0.073 0.927 11 C 0.083 3.917 12 N -0.855 5.855 13 Si 0.901 3.099 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.280 1.280 17 O -0.251 6.251 18 C 0.401 3.599 19 N -0.421 5.421 20 O 0.074 5.926 21 C 0.149 3.851 22 C 0.021 3.979 23 Br -0.118 7.118 24 N -0.461 5.461 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.143 0.857 31 H 0.109 0.891 32 H 0.270 0.730 33 H 0.136 0.864 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.580 -11.200 1.111 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.301 3.699 5 O -0.403 6.403 6 C -0.138 4.138 7 C 0.174 3.826 8 H 0.061 0.939 9 C -0.591 4.591 10 H 0.091 0.909 11 C -0.125 4.125 12 N -0.490 5.490 13 Si 0.727 3.273 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.206 1.206 17 O -0.151 6.151 18 C 0.095 3.905 19 N -0.156 5.156 20 O 0.023 5.977 21 C -0.073 4.073 22 C -0.096 4.096 23 Br -0.039 7.039 24 N -0.208 5.208 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.160 0.840 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.725 -11.538 0.980 11.896 hybrid contribution 0.522 1.111 0.019 1.227 sum 3.246 -10.427 1.000 10.966 Atomic orbital electron populations 1.21776 0.93190 1.02373 1.03350 1.22873 0.94912 0.81659 1.02100 1.86561 1.25903 1.31113 1.84678 1.24830 0.79642 0.94197 0.71253 1.90608 1.60268 1.43637 1.45801 1.21843 0.95899 0.88462 1.07640 1.19967 0.88890 0.92850 0.80918 0.93852 1.21452 1.32649 0.94226 1.10791 0.90910 1.25145 0.93698 0.99425 0.94270 1.69862 1.33672 1.34669 1.10818 0.86385 0.79283 0.83015 0.78578 1.19306 1.20299 1.20559 1.86434 1.28566 1.60440 1.39640 1.23482 0.91285 0.92240 0.83493 1.74977 1.00513 1.18124 1.21967 1.85267 1.36043 1.50903 1.25537 1.27592 0.95872 0.99053 0.84766 1.22778 0.96658 0.86411 1.03799 1.97493 1.94162 1.12745 1.99453 1.71679 1.06457 1.14020 1.28627 0.91561 0.91684 0.90789 0.91852 0.91696 0.83984 0.87328 0.91986 0.84566 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.29 37.16 0.38 -1.29 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.36 -6.89 10.22 -39.24 -0.40 -7.29 16 4 C 0.46 10.02 7.84 36.00 0.28 10.31 16 5 O -0.52 -12.55 15.17 -24.04 -0.36 -12.92 16 6 C -0.10 -2.31 5.22 -27.88 -0.15 -2.45 16 7 C 0.23 5.84 1.72 -27.88 -0.05 5.80 16 8 H 0.04 1.14 7.12 -51.93 -0.37 0.77 16 9 C -0.55 -14.70 8.90 -34.44 -0.31 -15.01 16 10 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 11 C 0.08 2.15 5.25 -17.82 -0.09 2.06 16 12 N -0.86 -22.82 10.92 55.43 0.61 -22.22 16 13 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 O -0.25 -6.82 8.48 -32.95 -0.28 -7.10 16 18 C 0.40 10.08 8.90 -90.54 -0.81 9.27 16 19 N -0.42 -9.91 11.12 27.83 0.31 -9.60 16 20 O 0.07 1.44 11.30 18.08 0.20 1.65 16 21 C 0.15 2.57 7.82 -13.00 -0.10 2.47 16 22 C 0.02 0.22 7.23 36.00 0.26 0.48 16 23 Br -0.12 -1.39 33.92 -68.01 -2.31 -3.70 16 24 N -0.46 -10.14 11.57 -13.62 -0.16 -10.30 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 29 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 30 H 0.14 3.48 6.21 -51.92 -0.32 3.16 16 31 H 0.11 2.22 8.14 -51.93 -0.42 1.80 16 32 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -32.38 327.47 -6.44 -38.82 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.62 Total: -0.12 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -0.35 Total: 12.76 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.76 Total: -42.12 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.84 Total: -25.67 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 35 Polarization: -1.39 SS G_CDS: -2.31 Total: -3.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.38 -6.44 -38.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223177177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.170 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds