Wall clock time and date at job start Wed Apr 1 2020 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47576 * 2 1 4 4 C 1.34224 * 117.00432 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99712 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00140 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.47263 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.46531 * 55.00273 * 7 6 4 9 9 C 1.50697 * 109.47303 * 174.99836 * 7 6 4 10 10 H 1.07991 * 120.00449 * 239.72787 * 9 7 6 11 11 C 1.37885 * 119.99686 * 60.00618 * 9 7 6 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 7 14 14 H 1.48490 * 109.47339 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 120.00108 * 13 11 9 16 16 H 1.48504 * 109.46636 * 239.99667 * 13 11 9 17 17 O 1.42895 * 109.47285 * 295.00481 * 7 6 4 18 18 C 1.35615 * 117.00013 * 149.99512 * 17 7 6 19 19 N 1.30459 * 126.36138 * 359.69243 * 18 17 7 20 20 O 1.21293 * 110.15885 * 179.80206 * 19 18 17 21 21 C 1.33654 * 109.93651 * 0.46371 * 20 19 18 22 22 C 1.50699 * 126.48116 * 179.71256 * 21 20 19 23 23 Br 1.96600 * 109.47311 * 269.99821 * 22 21 20 24 24 N 1.31070 * 107.03392 * 359.71024 * 21 20 19 25 25 H 1.09002 * 109.47247 * 300.00130 * 1 2 3 26 26 H 1.08999 * 109.47392 * 59.99493 * 1 2 3 27 27 H 1.09000 * 109.47331 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47247 * 239.99870 * 2 1 3 29 29 H 1.09001 * 109.47238 * 119.99983 * 2 1 3 30 30 H 1.09008 * 109.47030 * 60.00487 * 6 4 3 31 31 H 1.08997 * 109.47713 * 300.00103 * 6 4 3 32 32 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 33 33 H 1.09006 * 109.47410 * 30.00135 * 22 21 20 34 34 H 1.09002 * 109.46927 * 149.99869 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8572 0.0014 8 1 5.7814 2.2489 -0.8397 9 6 6.0246 4.2442 -0.1230 10 1 6.6637 4.4907 -0.9579 11 6 5.7402 5.1970 0.8323 12 7 4.9619 4.8968 1.8491 13 14 6.4602 6.9141 0.6822 14 1 7.2965 6.9949 -0.5422 15 1 5.3592 7.9068 0.5966 16 1 7.2978 7.2054 1.8734 17 8 5.8936 2.2645 1.2232 18 6 7.0500 1.5575 1.1793 19 7 7.7960 1.3595 0.1276 20 8 8.7634 0.6893 0.4214 21 6 8.7241 0.3774 1.7204 22 6 9.7355 -0.4464 2.4751 23 35 9.2201 -2.3423 2.4051 24 7 7.6395 0.9234 2.2138 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5845 3.4700 0.8896 31 1 3.5853 3.4690 -0.8904 32 1 4.7615 5.5672 2.5209 33 1 10.7185 -0.3200 2.0212 34 1 9.7699 -0.1173 3.5137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223177177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:20 Heat of formation + Delta-G solvation = -71.388525 kcal Electronic energy + Delta-G solvation = -22899.238535 eV Core-core repulsion = 19075.217635 eV Total energy + Delta-G solvation = -3824.020900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 348.020 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.47572 -41.55158 -39.66709 -37.64335 -36.64389 -35.34167 -34.14057 -32.95365 -32.02910 -31.73835 -28.52308 -28.21780 -25.30014 -24.84822 -23.86149 -22.74559 -21.57486 -19.72856 -19.34730 -18.94955 -18.35595 -17.77537 -17.38540 -17.21901 -16.54707 -16.31215 -15.52633 -15.33798 -14.90499 -14.87499 -14.33105 -14.23778 -14.05032 -13.74280 -13.44427 -13.26002 -13.02402 -12.89634 -12.68992 -12.63526 -12.51321 -12.17371 -12.08762 -11.63077 -11.56248 -11.47672 -11.32613 -11.13219 -10.99692 -10.81691 -10.04031 -8.31533 -6.60171 -0.23302 0.79106 1.20056 1.35059 1.40206 1.50233 1.52516 1.66397 1.76762 1.80024 2.31752 2.98119 3.13834 3.49324 3.85432 3.95486 3.97194 4.07891 4.15833 4.29476 4.35752 4.42338 4.52674 4.76355 4.83378 4.89334 4.94584 5.08656 5.22490 5.42914 5.57407 5.79742 6.32616 6.64623 6.77479 7.19947 7.35209 8.70688 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.008779 B = 0.004273 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.674527 B = 6551.127381 C = 9286.873409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.463 3.537 5 O -0.544 6.544 6 C -0.096 4.096 7 C 0.230 3.770 8 H 0.025 0.975 9 C -0.575 4.575 10 H 0.063 0.937 11 C 0.046 3.954 12 N -0.878 5.878 13 Si 0.964 3.036 14 H -0.269 1.269 15 H -0.263 1.263 16 H -0.282 1.282 17 O -0.275 6.275 18 C 0.369 3.631 19 N -0.442 5.442 20 O 0.085 5.915 21 C 0.176 3.824 22 C 0.023 3.977 23 Br -0.121 7.121 24 N -0.494 5.494 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.274 0.726 33 H 0.184 0.816 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 -11.509 1.404 12.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.279 6.279 4 C 0.309 3.691 5 O -0.434 6.434 6 C -0.133 4.133 7 C 0.176 3.824 8 H 0.043 0.957 9 C -0.611 4.611 10 H 0.081 0.919 11 C -0.160 4.160 12 N -0.513 5.513 13 Si 0.788 3.212 14 H -0.193 1.193 15 H -0.187 1.187 16 H -0.208 1.208 17 O -0.177 6.177 18 C 0.062 3.938 19 N -0.176 5.176 20 O 0.031 5.969 21 C -0.045 4.045 22 C -0.093 4.093 23 Br -0.042 7.042 24 N -0.239 5.239 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.201 0.799 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.178 -11.860 1.277 12.344 hybrid contribution 0.434 1.029 -0.044 1.117 sum 3.612 -10.831 1.233 11.484 Atomic orbital electron populations 1.21808 0.89585 1.04532 1.03828 1.23307 0.97669 0.79573 1.01997 1.86536 1.23848 1.33634 1.83902 1.24523 0.80557 0.93386 0.70661 1.90590 1.61220 1.44326 1.47269 1.21687 0.94555 0.89307 1.07755 1.19915 0.90265 0.92103 0.80100 0.95687 1.21552 1.33311 0.95141 1.11104 0.91894 1.25813 0.93820 1.02715 0.93689 1.69964 1.34276 1.35822 1.11255 0.85427 0.78800 0.78847 0.78158 1.19280 1.18726 1.20753 1.86335 1.29869 1.61344 1.40116 1.23821 0.91549 0.93556 0.84843 1.74951 1.01279 1.18926 1.22407 1.85205 1.34694 1.50329 1.26632 1.28755 0.95125 0.96879 0.83726 1.23388 0.96458 0.84647 1.04853 1.97522 1.94437 1.12771 1.99456 1.71660 1.08213 1.15406 1.28610 0.91412 0.90863 0.87735 0.91501 0.92396 0.85471 0.85434 0.91682 0.79889 0.81381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 10.29 71.98 0.74 -2.10 16 2 C 0.05 1.43 6.19 71.98 0.45 1.87 16 3 O -0.36 -13.69 10.22 -51.36 -0.52 -14.21 16 4 C 0.46 20.85 7.84 71.23 0.56 21.41 16 5 O -0.54 -27.33 15.17 27.03 0.41 -26.92 16 6 C -0.10 -4.50 5.22 29.85 0.16 -4.35 16 7 C 0.23 12.26 1.72 29.85 0.05 12.32 16 8 H 0.02 1.38 7.12 -2.38 -0.02 1.36 16 9 C -0.57 -31.28 8.90 25.60 0.23 -31.05 16 10 H 0.06 3.44 7.81 -2.92 -0.02 3.42 16 11 C 0.05 2.39 5.25 84.66 0.44 2.84 16 12 N -0.88 -47.55 10.92 21.45 0.23 -47.31 16 13 Si 0.96 41.32 29.54 68.60 2.03 43.34 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 O -0.28 -15.56 8.48 -75.49 -0.64 -16.20 16 18 C 0.37 19.02 8.90 180.32 1.60 20.63 16 19 N -0.44 -21.25 11.12 -183.22 -2.04 -23.28 16 20 O 0.09 3.26 11.30 74.75 0.84 4.11 16 21 C 0.18 5.86 7.82 88.36 0.69 6.55 16 22 C 0.02 0.42 7.23 71.24 0.52 0.93 16 23 Br -0.12 -2.61 33.92 -20.37 -0.69 -3.30 16 24 N -0.49 -21.79 11.57 -426.09 -4.93 -26.72 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 29 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 30 H 0.13 6.44 6.21 -2.38 -0.01 6.43 16 31 H 0.13 5.34 8.14 -2.39 -0.02 5.32 16 32 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.18 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.17 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -73.09 327.47 1.27 -71.82 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.14 Total: 9.62 kcal Atomic # 6 Polarization: 23.62 SS G_CDS: 5.43 Total: 29.06 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -6.73 Total: -97.31 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: 0.09 Total: -53.23 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 35 Polarization: -2.61 SS G_CDS: -0.69 Total: -3.30 kcal Total: -73.09 1.27 -71.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223177177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.431 kcal (2) G-P(sol) polarization free energy of solvation -73.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds