Wall clock time and date at job start Wed Apr 1 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30529 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48503 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46963 * 300.00587 * 3 2 1 6 6 H 1.48500 * 109.46702 * 60.00195 * 3 2 1 7 7 C 1.40344 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99923 * 180.02562 * 7 2 1 9 9 C 1.41761 * 120.00256 * 359.97438 * 7 2 1 10 10 O 1.21820 * 119.99772 * 0.02562 * 9 7 2 11 11 C 1.47569 * 120.00321 * 180.02562 * 9 7 2 12 12 C 1.39947 * 120.09663 * 180.02562 * 11 9 7 13 13 C 1.37594 * 119.90356 * 180.02562 * 12 11 9 14 14 C 1.39162 * 120.09786 * 0.27474 * 13 12 11 15 15 O 1.35663 * 119.90640 * 179.72599 * 14 13 12 16 16 C 1.42898 * 116.99720 * 174.41575 * 15 14 13 17 17 H 1.08997 * 109.47486 * 338.05047 * 16 15 14 18 18 C 1.53007 * 109.46692 * 98.04571 * 16 15 14 19 19 Cl 1.80300 * 109.47327 * 294.99830 * 18 16 15 20 20 C 1.52999 * 109.46993 * 218.04373 * 16 15 14 21 21 S 1.81393 * 109.47196 * 65.00804 * 20 16 15 22 22 O 1.42104 * 110.53960 * 291.61929 * 21 20 16 23 23 O 1.42099 * 110.54828 * 68.36946 * 21 20 16 24 24 O 1.52195 * 104.45248 * 179.97438 * 21 20 16 25 25 C 1.39167 * 120.18364 * 359.44583 * 14 13 12 26 26 C 1.37588 * 120.09536 * 0.55957 * 25 14 13 27 27 H 0.97001 * 119.99876 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.04529 * 0.02562 * 12 11 9 29 29 H 1.08007 * 119.94958 * 180.02562 * 13 12 11 30 30 H 1.09000 * 109.46614 * 54.99879 * 18 16 15 31 31 H 1.08994 * 109.47022 * 174.99681 * 18 16 15 32 32 H 1.09006 * 109.46935 * 185.00808 * 20 16 15 33 33 H 1.09000 * 109.47111 * 304.99991 * 20 16 15 34 34 H 0.96697 * 114.00408 * 179.97438 * 24 21 20 35 35 H 1.08000 * 119.94946 * 180.25477 * 25 14 13 36 36 H 1.08005 * 120.04805 * 179.74665 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6994 1.3464 -0.0006 5 1 1.8805 2.3965 -1.2124 6 1 1.8806 2.3963 1.2126 7 6 2.0070 -1.2154 -0.0005 8 1 3.0870 -1.2155 -0.0001 9 6 1.2982 -2.4431 -0.0005 10 8 0.0800 -2.4431 -0.0005 11 6 2.0360 -3.7212 -0.0005 12 6 1.3382 -4.9343 -0.0011 13 6 2.0302 -6.1236 -0.0005 14 6 3.4218 -6.1213 0.0063 15 8 4.1000 -7.2962 0.0124 16 6 5.5224 -7.2247 -0.1046 17 1 5.8021 -6.2754 -0.5614 18 6 6.1542 -7.3277 1.2851 19 17 5.6836 -5.8909 2.2673 20 6 6.0208 -8.3777 -0.9782 21 16 5.3897 -8.1736 -2.6665 22 8 3.9819 -8.3647 -2.6991 23 8 5.9908 -7.0476 -3.2910 24 8 5.9486 -9.3671 -3.4278 25 6 4.1195 -4.9173 0.0010 26 6 3.4355 -3.7235 0.0006 27 1 -0.4850 0.8401 0.0004 28 1 0.2582 -4.9369 -0.0019 29 1 1.4924 -7.0603 -0.0014 30 1 5.8036 -8.2349 1.7772 31 1 7.2394 -7.3626 1.1891 32 1 7.1107 -8.3759 -0.9950 33 1 5.6654 -9.3234 -0.5692 34 1 5.6917 -9.3947 -4.3596 35 1 5.1995 -4.9200 0.0022 36 1 3.9778 -2.7894 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:05 Heat of formation + Delta-G solvation = -174.725940 kcal Electronic energy + Delta-G solvation = -26091.138272 eV Core-core repulsion = 21887.524131 eV Total energy + Delta-G solvation = -4203.614141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.20263 -38.70293 -37.81266 -37.46355 -36.28591 -36.22270 -35.74188 -33.51081 -32.65278 -30.48903 -29.36485 -28.12781 -26.61796 -23.68956 -22.53855 -21.84090 -20.80497 -19.46533 -18.71394 -18.49646 -17.82668 -16.79883 -16.62250 -16.07540 -15.67886 -15.52672 -15.06917 -14.68356 -14.27688 -14.05227 -13.85122 -13.63669 -13.38349 -13.15595 -12.98490 -12.89194 -12.65965 -12.58060 -12.41656 -12.29299 -12.13411 -11.83541 -11.56458 -11.38330 -11.26337 -11.21427 -10.88682 -10.68457 -10.45569 -10.31609 -10.18599 -9.84621 -8.95669 -8.33532 -7.47342 -7.44575 -6.27737 -4.87466 -0.22601 1.83955 1.91063 2.07307 2.30072 2.87413 3.05807 3.14926 3.17229 3.19487 3.80446 3.95072 3.98733 4.02962 4.15106 4.28715 4.58484 4.69109 4.72920 4.87146 5.08029 5.40039 5.40923 5.45801 5.85150 5.89979 6.09095 6.18940 6.28888 6.67613 6.84256 7.08501 7.26704 7.27910 7.41998 7.77642 8.07120 8.81965 8.87431 10.33989 10.56317 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.003155 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.838268 B = 8873.653654 C = 9456.139755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.079 3.921 3 Si 0.905 3.095 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.389 3.611 10 O -0.543 6.543 11 C -0.128 4.128 12 C -0.061 4.061 13 C -0.146 4.146 14 C 0.099 3.901 15 O -0.303 6.303 16 C 0.080 3.920 17 H 0.107 0.893 18 C -0.054 4.054 19 Cl -0.149 7.149 20 C -0.623 4.623 21 S 2.632 3.368 22 O -0.940 6.940 23 O -0.961 6.961 24 O -0.903 6.903 25 C -0.209 4.209 26 C -0.058 4.058 27 H 0.273 0.727 28 H 0.133 0.867 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.461 0.539 35 H 0.123 0.877 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.120 -18.572 -2.287 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.092 0.908 9 C 0.285 3.715 10 O -0.433 6.433 11 C -0.130 4.130 12 C -0.079 4.079 13 C -0.165 4.165 14 C 0.055 3.945 15 O -0.218 6.218 16 C 0.021 3.979 17 H 0.125 0.875 18 C -0.118 4.118 19 Cl -0.122 7.122 20 C -0.751 4.751 21 S 2.722 3.278 22 O -0.939 6.939 23 O -0.960 6.960 24 O -0.772 6.772 25 C -0.228 4.228 26 C -0.076 4.076 27 H 0.084 0.916 28 H 0.151 0.849 29 H 0.142 0.858 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.330 0.670 35 H 0.140 0.860 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.156 -18.517 -2.297 24.681 hybrid contribution 1.021 0.689 0.242 1.255 sum 17.176 -17.828 -2.056 24.841 Atomic orbital electron populations 1.69972 1.07538 1.27944 1.30897 1.26009 0.94632 1.01004 0.92743 0.86336 0.80857 0.81356 0.78502 1.18360 1.19835 1.19872 1.20970 0.94957 0.91644 1.47184 0.90752 1.18074 0.88439 0.85853 0.79170 1.90502 1.15041 1.88538 1.49181 1.21852 0.94054 0.97849 0.99199 1.21221 1.00477 0.90638 0.95567 1.20281 0.90237 0.98916 1.07057 1.19025 0.91659 0.83282 1.00487 1.86110 1.16629 1.30039 1.89058 1.22131 0.82404 0.97962 0.95399 0.87530 1.24775 1.02239 0.92456 0.92330 1.98789 1.93764 1.45727 1.73961 1.30466 1.13429 1.08468 1.22690 1.03997 0.74109 0.72348 0.77300 1.93702 1.31138 1.83447 1.85564 1.93676 1.77941 1.52207 1.72156 1.85423 1.84459 1.70192 1.37138 1.21187 0.99420 0.92478 1.09703 1.21308 0.94084 0.96961 0.95280 0.91577 0.84912 0.85757 0.87428 0.87268 0.82709 0.82900 0.66960 0.85967 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -21.37 11.73 55.57 0.65 -20.72 16 2 C 0.08 2.16 5.50 -17.31 -0.10 2.06 16 3 Si 0.91 19.48 29.56 -169.99 -5.03 14.45 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.52 -14.36 8.86 -37.44 -0.33 -14.69 16 8 H 0.07 1.88 6.01 -52.49 -0.32 1.56 16 9 C 0.39 11.20 6.91 -34.43 -0.24 10.96 16 10 O -0.54 -17.51 14.89 5.08 0.08 -17.43 16 11 C -0.13 -3.09 5.89 -104.81 -0.62 -3.71 16 12 C -0.06 -1.33 9.59 -39.18 -0.38 -1.71 16 13 C -0.15 -2.76 9.97 -39.47 -0.39 -3.16 16 14 C 0.10 1.71 6.23 -38.89 -0.24 1.47 16 15 O -0.30 -4.24 9.02 -19.66 -0.18 -4.41 16 16 C 0.08 0.79 2.15 -26.73 -0.06 0.73 16 17 H 0.11 1.09 5.47 -51.93 -0.28 0.81 16 18 C -0.05 -0.43 6.34 37.16 0.24 -0.19 16 19 Cl -0.15 -1.83 25.64 -51.86 -1.33 -3.16 16 20 C -0.62 -3.74 5.86 37.16 0.22 -3.53 16 21 S 2.63 22.56 5.52 -107.50 -0.59 21.97 16 22 O -0.94 -12.21 17.62 -67.83 -1.19 -13.40 16 23 O -0.96 -11.50 18.09 -67.04 -1.21 -12.71 16 24 O -0.90 -4.46 13.27 -67.56 -0.90 -5.36 16 25 C -0.21 -3.67 7.15 -39.47 -0.28 -3.96 16 26 C -0.06 -1.20 9.43 -39.18 -0.37 -1.57 16 27 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 28 H 0.13 2.94 7.65 -52.49 -0.40 2.54 16 29 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.15 0.35 8.14 -51.92 -0.42 -0.08 16 33 H 0.15 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.46 0.38 9.03 67.38 0.61 0.99 16 35 H 0.12 1.78 4.81 -52.49 -0.25 1.53 16 36 H 0.13 2.64 6.19 -52.48 -0.33 2.31 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -40.65 338.61 -9.37 -50.02 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -2.22 Total: 2.95 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.55 Total: -17.29 kcal Atomic # 7 Polarization: -21.37 SS G_CDS: 0.65 Total: -20.72 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -3.41 Total: -53.32 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Atomic # 16 Polarization: 22.56 SS G_CDS: -0.59 Total: 21.97 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.33 Total: -3.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -40.65 -9.37 -50.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.707 kcal (2) G-P(sol) polarization free energy of solvation -40.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds