Wall clock time and date at job start Wed Apr 1 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30529 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48503 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46963 * 300.00587 * 3 2 1 6 6 H 1.48500 * 109.46702 * 60.00195 * 3 2 1 7 7 C 1.40344 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99923 * 180.02562 * 7 2 1 9 9 C 1.41761 * 120.00256 * 359.97438 * 7 2 1 10 10 O 1.21820 * 119.99772 * 0.02562 * 9 7 2 11 11 C 1.47569 * 120.00321 * 180.02562 * 9 7 2 12 12 C 1.39947 * 120.09663 * 180.02562 * 11 9 7 13 13 C 1.37594 * 119.90356 * 180.02562 * 12 11 9 14 14 C 1.39162 * 120.09786 * 0.27474 * 13 12 11 15 15 O 1.35663 * 119.90640 * 179.72599 * 14 13 12 16 16 C 1.42898 * 116.99720 * 174.41575 * 15 14 13 17 17 H 1.08997 * 109.47486 * 338.05047 * 16 15 14 18 18 C 1.53007 * 109.46692 * 98.04571 * 16 15 14 19 19 Cl 1.80300 * 109.47327 * 294.99830 * 18 16 15 20 20 C 1.52999 * 109.46993 * 218.04373 * 16 15 14 21 21 S 1.81393 * 109.47196 * 65.00804 * 20 16 15 22 22 O 1.42104 * 110.53960 * 291.61929 * 21 20 16 23 23 O 1.42099 * 110.54828 * 68.36946 * 21 20 16 24 24 O 1.52195 * 104.45248 * 179.97438 * 21 20 16 25 25 C 1.39167 * 120.18364 * 359.44583 * 14 13 12 26 26 C 1.37588 * 120.09536 * 0.55957 * 25 14 13 27 27 H 0.97001 * 119.99876 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.04529 * 0.02562 * 12 11 9 29 29 H 1.08007 * 119.94958 * 180.02562 * 13 12 11 30 30 H 1.09000 * 109.46614 * 54.99879 * 18 16 15 31 31 H 1.08994 * 109.47022 * 174.99681 * 18 16 15 32 32 H 1.09006 * 109.46935 * 185.00808 * 20 16 15 33 33 H 1.09000 * 109.47111 * 304.99991 * 20 16 15 34 34 H 0.96697 * 114.00408 * 179.97438 * 24 21 20 35 35 H 1.08000 * 119.94946 * 180.25477 * 25 14 13 36 36 H 1.08005 * 120.04805 * 179.74665 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6994 1.3464 -0.0006 5 1 1.8805 2.3965 -1.2124 6 1 1.8806 2.3963 1.2126 7 6 2.0070 -1.2154 -0.0005 8 1 3.0870 -1.2155 -0.0001 9 6 1.2982 -2.4431 -0.0005 10 8 0.0800 -2.4431 -0.0005 11 6 2.0360 -3.7212 -0.0005 12 6 1.3382 -4.9343 -0.0011 13 6 2.0302 -6.1236 -0.0005 14 6 3.4218 -6.1213 0.0063 15 8 4.1000 -7.2962 0.0124 16 6 5.5224 -7.2247 -0.1046 17 1 5.8021 -6.2754 -0.5614 18 6 6.1542 -7.3277 1.2851 19 17 5.6836 -5.8909 2.2673 20 6 6.0208 -8.3777 -0.9782 21 16 5.3897 -8.1736 -2.6665 22 8 3.9819 -8.3647 -2.6991 23 8 5.9908 -7.0476 -3.2910 24 8 5.9486 -9.3671 -3.4278 25 6 4.1195 -4.9173 0.0010 26 6 3.4355 -3.7235 0.0006 27 1 -0.4850 0.8401 0.0004 28 1 0.2582 -4.9369 -0.0019 29 1 1.4924 -7.0603 -0.0014 30 1 5.8036 -8.2349 1.7772 31 1 7.2394 -7.3626 1.1891 32 1 7.1107 -8.3759 -0.9950 33 1 5.6654 -9.3234 -0.5692 34 1 5.6917 -9.3947 -4.3596 35 1 5.1995 -4.9200 0.0022 36 1 3.9778 -2.7894 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:04 Heat of formation + Delta-G solvation = -208.422599 kcal Electronic energy + Delta-G solvation = -26092.599469 eV Core-core repulsion = 21887.524131 eV Total energy + Delta-G solvation = -4205.075337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.036 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.43389 -39.51106 -39.14277 -38.24546 -37.74711 -37.06180 -36.89116 -34.79386 -34.38221 -32.06360 -31.05006 -28.72453 -28.59743 -24.93533 -24.09266 -22.88734 -21.86031 -21.04465 -19.69524 -19.32177 -18.62486 -18.47860 -17.63923 -17.38038 -17.00706 -16.58684 -16.12416 -15.97136 -15.67551 -15.16774 -14.90860 -14.77442 -14.46190 -14.35948 -14.33498 -14.03348 -13.90001 -13.71034 -13.39475 -13.32881 -13.22474 -13.11095 -13.08859 -12.85202 -12.70576 -12.41843 -12.38624 -12.08151 -12.01459 -11.67268 -11.32002 -11.15023 -10.99665 -9.89764 -9.61338 -9.05113 -8.34301 -7.07225 -0.83824 0.20388 0.48781 1.24449 1.37118 1.37875 1.56766 1.70264 1.89252 2.20479 2.21228 2.58943 2.84543 3.22432 3.35651 3.37420 3.53081 3.75119 3.86130 3.97674 4.11939 4.19044 4.27640 4.45683 4.48575 4.54375 4.63439 4.74896 5.08663 5.19344 5.22153 5.29284 5.44862 5.72653 5.75685 5.97599 6.32910 6.70004 6.80270 8.25323 8.49461 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.003155 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.838268 B = 8873.653654 C = 9456.139755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.021 3.979 3 Si 0.996 3.004 4 H -0.243 1.243 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.095 0.905 9 C 0.364 3.636 10 O -0.599 6.599 11 C -0.173 4.173 12 C -0.071 4.071 13 C -0.153 4.153 14 C 0.125 3.875 15 O -0.303 6.303 16 C 0.057 3.943 17 H 0.104 0.896 18 C -0.048 4.048 19 Cl -0.192 7.192 20 C -0.603 4.603 21 S 2.640 3.360 22 O -0.995 6.995 23 O -1.004 7.004 24 O -0.887 6.887 25 C -0.201 4.201 26 C -0.057 4.057 27 H 0.282 0.718 28 H 0.114 0.886 29 H 0.146 0.854 30 H 0.127 0.873 31 H 0.155 0.845 32 H 0.206 0.794 33 H 0.183 0.817 34 H 0.476 0.524 35 H 0.158 0.842 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.652 -20.264 -1.990 29.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.197 4.197 3 Si 0.814 3.186 4 H -0.165 1.165 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.113 0.887 9 C 0.265 3.735 10 O -0.494 6.494 11 C -0.174 4.174 12 C -0.090 4.090 13 C -0.171 4.171 14 C 0.081 3.919 15 O -0.218 6.218 16 C -0.001 4.001 17 H 0.122 0.878 18 C -0.111 4.111 19 Cl -0.165 7.165 20 C -0.733 4.733 21 S 2.735 3.265 22 O -0.994 6.994 23 O -1.002 7.002 24 O -0.759 6.759 25 C -0.219 4.219 26 C -0.075 4.075 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.164 0.836 30 H 0.145 0.855 31 H 0.173 0.827 32 H 0.223 0.777 33 H 0.201 0.799 34 H 0.349 0.651 35 H 0.175 0.825 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 20.706 -20.243 -2.051 29.029 hybrid contribution -0.214 0.903 0.124 0.936 sum 20.492 -19.340 -1.927 28.243 Atomic orbital electron populations 1.70120 1.10031 1.29795 1.31722 1.27316 0.95528 1.05681 0.91220 0.84996 0.79706 0.74902 0.78955 1.16526 1.18873 1.18866 1.21478 0.96158 0.92240 1.47412 0.88685 1.18805 0.88212 0.88427 0.78105 1.90436 1.17182 1.89812 1.52003 1.21478 0.95528 0.96428 1.03989 1.21113 0.99825 0.91474 0.96567 1.20417 0.91490 0.98409 1.06832 1.18996 0.91390 0.84514 0.97047 1.86122 1.19430 1.27944 1.88293 1.22683 0.79896 0.99817 0.97688 0.87792 1.25131 1.04780 0.91077 0.90112 1.98797 1.94182 1.48429 1.75131 1.30368 1.16370 1.08138 1.18421 1.03421 0.72894 0.71805 0.78419 1.93651 1.34650 1.84258 1.86844 1.93633 1.78209 1.54462 1.73921 1.85368 1.83696 1.68288 1.38550 1.21456 1.01073 0.91259 1.08082 1.21321 0.92618 0.98552 0.95047 0.90762 0.86835 0.83647 0.85483 0.82722 0.77661 0.79933 0.65091 0.82467 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.04 11.73 21.89 0.26 -47.78 16 2 C 0.02 1.18 5.50 85.40 0.47 1.65 16 3 Si 1.00 40.30 29.56 68.60 2.03 42.32 16 4 H -0.24 -9.03 7.11 99.48 0.71 -8.32 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 7 C -0.54 -31.38 8.86 23.65 0.21 -31.17 16 8 H 0.10 4.88 6.01 -2.91 -0.02 4.86 16 9 C 0.36 22.43 6.91 25.61 0.18 22.61 16 10 O -0.60 -41.84 14.89 -4.73 -0.07 -41.91 16 11 C -0.17 -8.81 5.89 -19.99 -0.12 -8.93 16 12 C -0.07 -3.32 9.59 22.53 0.22 -3.11 16 13 C -0.15 -5.83 9.97 22.34 0.22 -5.61 16 14 C 0.13 4.17 6.23 22.72 0.14 4.31 16 15 O -0.30 -7.52 9.02 -88.86 -0.80 -8.32 16 16 C 0.06 0.86 2.15 30.60 0.07 0.93 16 17 H 0.10 1.68 5.47 -2.39 -0.01 1.67 16 18 C -0.05 -0.50 6.34 71.98 0.46 -0.05 16 19 Cl -0.19 -4.15 25.64 -2.72 -0.07 -4.22 16 20 C -0.60 -3.83 5.86 71.98 0.42 -3.41 16 21 S 2.64 38.17 5.52 -56.49 -0.31 37.86 16 22 O -1.00 -24.70 17.62 -117.81 -2.08 -26.78 16 23 O -1.00 -22.20 18.09 -118.57 -2.15 -24.34 16 24 O -0.89 -5.92 13.27 -118.07 -1.57 -7.49 16 25 C -0.20 -6.77 7.15 22.34 0.16 -6.61 16 26 C -0.06 -2.40 9.43 22.53 0.21 -2.19 16 27 H 0.28 15.28 8.29 -92.71 -0.77 14.51 16 28 H 0.11 5.56 7.65 -2.91 -0.02 5.54 16 29 H 0.15 4.81 8.06 -2.91 -0.02 4.78 16 30 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.21 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H 0.18 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.48 -0.30 9.03 -87.93 -0.79 -1.10 16 35 H 0.16 4.13 4.81 -2.91 -0.01 4.12 16 36 H 0.14 5.46 6.19 -2.91 -0.02 5.44 16 Total: -1.00 -97.22 338.61 -1.75 -98.97 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.37 Total: 13.25 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 2.63 Total: -31.56 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.26 Total: -47.78 kcal Atomic # 8 Polarization: -102.18 SS G_CDS: -6.66 Total: -108.84 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 38.17 SS G_CDS: -0.31 Total: 37.86 kcal Atomic # 17 Polarization: -4.15 SS G_CDS: -0.07 Total: -4.22 kcal Total: -97.22 -1.75 -98.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.455 kcal (2) G-P(sol) polarization free energy of solvation -97.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds