Wall clock time and date at job start Wed Apr 1 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39487 * 120.20638 * 80.55672 * 3 2 1 5 5 C 1.38075 * 119.94925 * 180.02562 * 4 3 2 6 6 Br 1.89102 * 119.81071 * 179.97438 * 5 4 3 7 7 C 1.38575 * 120.37661 * 0.02562 * 5 4 3 8 8 C 1.38054 * 120.42270 * 359.97438 * 7 5 4 9 9 C 1.39157 * 120.03378 * 359.72396 * 8 7 5 10 10 C 1.48277 * 120.18511 * 180.27300 * 9 8 7 11 11 N 1.30810 * 126.41644 * 179.97438 * 10 9 8 12 12 O 1.21293 * 110.08063 * 179.84726 * 11 10 9 13 13 C 1.33673 * 110.03941 * 0.42433 * 12 11 10 14 14 C 1.50707 * 126.42899 * 179.69649 * 13 12 11 15 15 H 1.09000 * 109.46740 * 195.04559 * 14 13 12 16 16 N 1.46895 * 109.47257 * 315.04875 * 14 13 12 17 17 C 1.50698 * 109.46774 * 75.04980 * 14 13 12 18 18 H 1.08003 * 120.00109 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00119 * 179.97438 * 17 14 13 20 20 N 1.31509 * 119.99568 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00166 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47247 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47262 * 120.00045 * 21 19 17 24 24 H 1.48504 * 109.47169 * 240.00162 * 21 19 17 25 25 N 1.30958 * 107.13814 * 359.74197 * 13 12 11 26 26 H 1.07998 * 120.02517 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.78903 * 179.97438 * 7 5 4 28 28 H 1.08000 * 119.98275 * 180.02562 * 8 7 5 29 29 H 1.00905 * 110.99772 * 296.04145 * 16 14 13 30 30 H 1.00894 * 111.00112 * 59.99932 * 16 14 13 31 31 H 0.97005 * 120.00235 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.1968 -1.1891 5 6 4.6506 -0.1957 -1.1829 6 35 5.5981 -0.4645 -2.7972 7 6 5.3459 0.0002 -0.0004 8 6 4.6668 0.1971 1.1854 9 6 3.2754 0.2056 1.1981 10 6 2.5427 0.4228 2.4688 11 7 1.2438 0.4547 2.6206 12 8 0.9652 0.6487 3.7850 13 6 2.0823 0.7720 4.5088 14 6 2.1641 1.0265 5.9920 15 1 3.1750 1.3409 6.2514 16 7 1.2129 2.0835 6.3606 17 6 1.8241 -0.2379 6.7381 18 1 1.5735 -1.1358 6.1928 19 6 1.8331 -0.2484 8.1168 20 7 2.1378 0.8452 8.7807 21 14 1.4110 -1.8155 9.0417 22 1 1.1054 -2.8965 8.0704 23 1 2.5650 -2.2188 9.8849 24 1 0.2265 -1.5770 9.9050 25 7 3.0921 0.6310 3.6870 26 1 2.7337 -0.3513 -2.1138 27 1 6.4259 -0.0012 -0.0064 28 1 5.2159 0.3495 2.1029 29 1 1.4579 2.9591 5.9231 30 1 0.2678 1.8159 6.1300 31 1 2.1438 0.8380 9.7507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248225392.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:35 Heat of formation + Delta-G solvation = 111.516924 kcal Electronic energy + Delta-G solvation = -20808.575483 eV Core-core repulsion = 17332.087629 eV Total energy + Delta-G solvation = -3476.487854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 347.996 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.57514 -40.86069 -37.67627 -37.25816 -36.71743 -34.27806 -33.54978 -32.76092 -32.30592 -30.47518 -28.46233 -26.09056 -25.75684 -24.87864 -23.46814 -22.23993 -19.89788 -19.35466 -18.72805 -18.31753 -17.46844 -17.03854 -16.58202 -16.35622 -15.88781 -15.50834 -15.46605 -15.03927 -14.69366 -14.44357 -14.22750 -14.06759 -13.84061 -13.26207 -13.22853 -12.96437 -12.90476 -12.75070 -12.68666 -12.20730 -12.11819 -11.97773 -11.56958 -11.37912 -10.98327 -10.64329 -10.32573 -9.81787 -9.42408 -8.12272 -6.35992 -0.95026 -0.29314 0.23976 0.37542 1.21770 1.44415 1.45290 1.48457 1.57504 1.70393 1.87746 2.25671 2.43842 2.54306 2.62882 2.84167 3.15909 3.56759 3.77927 3.91210 4.03335 4.07630 4.15694 4.47382 4.60447 4.72135 4.75418 4.87987 5.04478 5.10260 5.32320 5.60836 5.81806 6.27125 6.36307 6.79132 6.92668 7.05690 7.37438 8.92360 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.002473 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.959150 B =11321.193134 C =11849.515594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.259 3.741 3 C -0.002 4.002 4 C -0.031 4.031 5 C -0.079 4.079 6 Br -0.013 7.013 7 C -0.042 4.042 8 C -0.065 4.065 9 C 0.028 3.972 10 C 0.185 3.815 11 N -0.404 5.404 12 O 0.062 5.938 13 C 0.201 3.799 14 C 0.318 3.682 15 H 0.072 0.928 16 N -0.803 5.803 17 C -0.560 4.560 18 H 0.046 0.954 19 C 0.052 3.948 20 N -0.865 5.865 21 Si 0.955 3.045 22 H -0.277 1.277 23 H -0.274 1.274 24 H -0.277 1.277 25 N -0.495 5.495 26 H 0.171 0.829 27 H 0.183 0.817 28 H 0.161 0.839 29 H 0.323 0.677 30 H 0.335 0.665 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.455 -1.071 -23.258 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.056 4.056 3 C -0.008 4.008 4 C -0.053 4.053 5 C -0.160 4.160 6 Br 0.073 6.927 7 C -0.062 4.062 8 C -0.086 4.086 9 C 0.023 3.977 10 C -0.085 4.085 11 N -0.116 5.116 12 O 0.007 5.993 13 C -0.022 4.022 14 C 0.204 3.796 15 H 0.090 0.910 16 N -0.331 5.331 17 C -0.599 4.599 18 H 0.064 0.936 19 C -0.155 4.155 20 N -0.499 5.499 21 Si 0.780 3.220 22 H -0.202 1.202 23 H -0.199 1.199 24 H -0.203 1.203 25 N -0.228 5.228 26 H 0.189 0.811 27 H 0.201 0.799 28 H 0.178 0.822 29 H 0.136 0.864 30 H 0.148 0.852 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.150 -1.279 -23.640 25.758 hybrid contribution -0.712 -0.556 0.422 0.997 sum 9.437 -1.835 -23.218 25.130 Atomic orbital electron populations 1.81165 1.13035 1.08396 1.07682 1.25606 0.92849 0.93845 0.93326 1.15825 0.83822 1.07142 0.94053 1.21193 0.92601 0.94765 0.96729 1.21940 0.93975 1.05863 0.94215 1.96846 1.73839 1.95464 1.26587 1.21645 1.02653 0.93178 0.88733 1.21355 0.90338 0.96334 1.00540 1.17588 0.93684 1.01036 0.85358 1.24411 0.87340 1.01727 0.94994 1.74890 1.17177 1.21876 0.97680 1.85229 1.36353 1.64544 1.13167 1.31875 0.78669 0.90380 1.01257 1.18028 0.95829 0.92572 0.73143 0.91033 1.58981 1.05311 1.03874 1.64889 1.20834 1.52770 0.94487 0.91836 0.93607 1.25488 0.93513 0.98702 0.97768 1.70153 1.44328 1.27729 1.07652 0.85584 0.78172 0.79735 0.78495 1.20166 1.19913 1.20283 1.72020 1.29977 1.22047 0.98794 0.81135 0.79940 0.82185 0.86438 0.85221 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -15.05 18.43 19.00 0.35 -14.70 16 2 C 0.26 7.86 12.96 88.33 1.14 9.00 16 3 C 0.00 -0.05 5.76 -21.15 -0.12 -0.17 16 4 C -0.03 -0.48 9.48 22.53 0.21 -0.27 16 5 C -0.08 -1.03 6.22 22.31 0.14 -0.90 16 6 Br -0.01 -0.14 33.68 -20.37 -0.69 -0.83 16 7 C -0.04 -0.52 9.76 22.31 0.22 -0.31 16 8 C -0.06 -1.25 9.69 22.45 0.22 -1.03 16 9 C 0.03 0.75 5.91 -19.80 -0.12 0.63 16 10 C 0.19 6.76 7.69 137.23 1.06 7.81 16 11 N -0.40 -16.47 9.92 -59.10 -0.59 -17.05 16 12 O 0.06 2.65 11.27 74.57 0.84 3.49 16 13 C 0.20 8.60 7.22 88.36 0.64 9.24 16 14 C 0.32 14.83 3.16 43.43 0.14 14.96 16 15 H 0.07 3.58 8.14 -2.39 -0.02 3.56 16 16 N -0.80 -34.64 8.53 -174.96 -1.49 -36.13 16 17 C -0.56 -29.14 8.71 25.60 0.22 -28.92 16 18 H 0.05 2.45 7.74 -2.91 -0.02 2.43 16 19 C 0.05 2.69 5.39 84.66 0.46 3.15 16 20 N -0.86 -46.33 12.77 21.45 0.27 -46.05 16 21 Si 0.95 41.46 29.54 68.60 2.03 43.48 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 N -0.49 -19.68 11.26 -302.51 -3.41 -23.08 16 26 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 27 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 28 H 0.16 3.06 7.87 -2.91 -0.02 3.03 16 29 H 0.32 12.13 9.06 -89.69 -0.81 11.31 16 30 H 0.33 14.00 8.96 -89.70 -0.80 13.19 16 31 H 0.26 13.44 8.31 -92.70 -0.77 12.67 16 Total: -1.00 -62.93 314.87 1.15 -61.78 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -0.38 Total: 15.87 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 4.20 Total: 13.21 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -4.86 Total: -137.02 kcal Atomic # 8 Polarization: 2.65 SS G_CDS: 0.84 Total: 3.49 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.69 Total: -0.83 kcal Total: -62.93 1.15 -61.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225392.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.297 kcal (2) G-P(sol) polarization free energy of solvation -62.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds